Wall clock time and date at job start Wed Apr 1 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54451 * 112.29837 * 2 1 4 4 N 1.48328 * 104.32755 * 96.98716 * 3 2 1 5 5 C 1.36930 * 128.20273 * 221.77492 * 4 3 2 6 6 H 1.08000 * 120.00543 * 156.46446 * 5 4 3 7 7 C 1.38815 * 119.99671 * 336.18613 * 5 4 3 8 8 N 1.31612 * 120.00197 * 354.66719 * 7 5 4 9 9 Si 1.86799 * 119.99949 * 174.66839 * 7 5 4 10 10 H 1.48509 * 109.47302 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47390 * 119.99926 * 9 7 5 12 12 H 1.48500 * 109.47337 * 240.00015 * 9 7 5 13 13 C 1.48340 * 103.60196 * 42.03333 * 4 3 2 14 14 C 1.54823 * 104.13762 * 317.93709 * 13 4 3 15 15 H 1.09002 * 112.44936 * 263.19817 * 14 13 4 16 16 C 1.53750 * 109.36341 * 137.74184 * 14 13 4 17 17 N 1.47189 * 106.43059 * 229.34391 * 16 14 13 18 18 C 1.34776 * 126.70733 * 211.37098 * 17 16 14 19 19 O 1.21602 * 120.00726 * 183.92739 * 18 17 16 20 20 C 1.47430 * 119.99445 * 3.93154 * 18 17 16 21 21 C 1.41471 * 126.48918 * 326.19984 * 20 18 17 22 22 N 1.30600 * 108.07188 * 180.02562 * 21 20 18 23 23 N 1.39617 * 108.87304 * 359.97438 * 22 21 20 24 24 C 1.34599 * 108.34428 * 359.77493 * 23 22 21 25 25 C 1.50802 * 124.57456 * 179.54353 * 24 23 22 26 26 C 1.53449 * 108.26378 * 344.89843 * 25 24 23 27 27 C 1.53171 * 109.11806 * 48.09792 * 26 25 24 28 28 C 1.46690 * 127.22128 * 180.02562 * 23 22 21 29 29 C 1.48680 * 106.65624 * 31.58838 * 17 16 14 30 30 H 1.09000 * 109.47317 * 61.01747 * 1 2 3 31 31 H 1.09005 * 109.47042 * 181.01189 * 1 2 3 32 32 H 1.08997 * 109.47159 * 301.01862 * 1 2 3 33 33 H 1.09003 * 110.46317 * 338.27380 * 3 2 1 34 34 H 1.09007 * 110.57121 * 215.75315 * 3 2 1 35 35 H 0.97006 * 120.00464 * 179.97438 * 8 7 5 36 36 H 1.08989 * 110.46132 * 76.67496 * 13 4 3 37 37 H 1.09000 * 110.46256 * 199.25969 * 13 4 3 38 38 H 1.09001 * 110.06366 * 348.58500 * 16 14 13 39 39 H 1.09000 * 110.06012 * 110.10187 * 16 14 13 40 40 H 1.08005 * 125.95824 * 0.02562 * 21 20 18 41 41 H 1.09007 * 109.87718 * 225.09504 * 25 24 23 42 42 H 1.09001 * 109.53590 * 104.50703 * 25 24 23 43 43 H 1.09006 * 109.52801 * 288.20852 * 26 25 24 44 44 H 1.09003 * 109.53136 * 167.99156 * 26 25 24 45 45 H 1.08996 * 109.45726 * 170.73507 * 27 26 25 46 46 H 1.08993 * 109.45513 * 50.77860 * 27 26 25 47 47 H 1.09001 * 109.57626 * 282.37033 * 28 23 22 48 48 H 1.09001 * 109.57950 * 42.63211 * 28 23 22 49 49 H 1.09000 * 109.98340 * 209.60071 * 29 17 16 50 50 H 1.09005 * 110.85792 * 87.61578 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4290 0.0000 4 7 2.4170 1.7023 1.4265 5 6 2.2032 2.8568 2.1310 6 1 2.1054 2.8233 3.2060 7 6 2.1180 4.0712 1.4639 8 7 2.3466 4.1282 0.1690 9 14 1.6789 5.6245 2.4041 10 1 1.4724 5.2941 3.8371 11 1 2.7838 6.6086 2.2778 12 1 0.4320 6.2058 1.8450 13 6 3.0105 0.4308 1.9076 14 6 2.1221 -0.6659 1.2711 15 1 1.3492 -1.0226 1.9520 16 6 3.0132 -1.8062 0.7520 17 7 2.5822 -2.0753 -0.6294 18 6 2.6115 -3.2632 -1.2655 19 8 2.2907 -3.3342 -2.4363 20 6 3.0324 -4.4767 -0.5416 21 6 4.0046 -4.5500 0.4835 22 7 4.0932 -5.7946 0.8695 23 7 3.1978 -6.5635 0.1237 24 6 2.5508 -5.7500 -0.7314 25 6 1.5053 -6.2036 -1.7190 26 6 1.5917 -7.7306 -1.8433 27 6 1.6319 -8.3466 -0.4415 28 6 2.9682 -8.0086 0.2283 29 6 2.1130 -0.7804 -1.1894 30 1 -0.3634 0.4979 -0.8990 31 1 -0.3633 -1.0276 0.0181 32 1 -0.3633 0.5296 0.8807 33 1 1.3828 2.1416 -0.3780 34 1 3.0276 1.4691 -0.5963 35 1 2.2867 4.9768 -0.2972 36 1 4.0404 0.3368 1.5636 37 1 2.9645 0.3763 2.9953 38 1 4.0589 -1.4988 0.7643 39 1 2.8772 -2.6963 1.3663 40 1 4.5740 -3.7214 0.8780 41 1 1.6892 -5.7446 -2.6904 42 1 0.5164 -5.9193 -1.3593 43 1 2.4972 -8.0013 -2.3864 44 1 0.7188 -8.1025 -2.3798 45 1 1.5274 -9.4289 -0.5173 46 1 0.8138 -7.9440 0.1556 47 1 3.7743 -8.5437 -0.2736 48 1 2.9359 -8.2983 1.2786 49 1 1.3392 -0.9563 -1.9367 50 1 2.9409 -0.2257 -1.6311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092174577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:28 Heat of formation + Delta-G solvation = 48.473387 kcal Electronic energy + Delta-G solvation = -31053.604954 eV Core-core repulsion = 27081.890279 eV Total energy + Delta-G solvation = -3971.714676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.74338 -41.27856 -39.39394 -37.50275 -36.45189 -34.28094 -33.53524 -32.86952 -31.44696 -31.14234 -29.79640 -28.00285 -27.18262 -26.62522 -25.25886 -24.44681 -23.28789 -22.76109 -22.11910 -20.68742 -19.96896 -19.49013 -18.79100 -18.03985 -17.23969 -16.87635 -16.73331 -16.35210 -16.24232 -15.86431 -15.61770 -15.32215 -15.19330 -15.12486 -14.98719 -14.82694 -14.47918 -14.15444 -13.79897 -13.64768 -13.45646 -13.25771 -13.12267 -13.02471 -12.84809 -12.73960 -12.50958 -12.41018 -12.28139 -11.97014 -11.95276 -11.83512 -11.74958 -11.63012 -11.51120 -11.47178 -11.28930 -10.86652 -10.68332 -10.34282 -9.81110 -9.52656 -8.74793 -7.89268 -5.28509 0.53360 1.14647 1.36027 1.47976 1.48659 1.59049 1.97296 2.27584 2.50723 3.31605 3.32749 3.45759 3.52052 3.54451 3.73327 3.78295 3.86754 3.98080 4.00160 4.10113 4.22024 4.27876 4.30427 4.33572 4.39666 4.42597 4.53655 4.61289 4.65637 4.70684 4.76477 4.81987 4.87618 4.94345 4.95478 4.99964 5.01259 5.05614 5.09845 5.22061 5.23818 5.25440 5.29838 5.39572 5.49749 5.52009 5.59015 5.72138 5.89114 6.24698 6.52896 6.61398 7.04902 7.18049 7.71620 8.55670 9.25296 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.002463 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.053577 B =11363.386146 C =11812.430815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C 0.181 3.819 4 N -0.616 5.616 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.057 4.057 8 N -0.943 5.943 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.129 3.871 14 C -0.095 4.095 15 H 0.097 0.903 16 C 0.113 3.887 17 N -0.609 5.609 18 C 0.612 3.388 19 O -0.585 6.585 20 C -0.311 4.311 21 C 0.081 3.919 22 N -0.316 5.316 23 N -0.357 5.357 24 C 0.152 3.848 25 C -0.068 4.068 26 C -0.122 4.122 27 C -0.130 4.130 28 C 0.117 3.883 29 C 0.128 3.872 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.003 0.997 35 H 0.248 0.752 36 H 0.031 0.969 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.205 0.795 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.127 0.873 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.073 0.927 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -28.101 -0.185 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C 0.055 3.945 4 N -0.340 5.340 5 C -0.364 4.364 6 H 0.095 0.905 7 C -0.252 4.252 8 N -0.590 5.590 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.220 1.220 13 C 0.003 3.997 14 C -0.116 4.116 15 H 0.115 0.885 16 C -0.010 4.010 17 N -0.340 5.340 18 C 0.403 3.597 19 O -0.467 6.467 20 C -0.326 4.326 21 C -0.106 4.106 22 N -0.136 5.136 23 N -0.137 5.137 24 C 0.019 3.981 25 C -0.106 4.106 26 C -0.159 4.159 27 C -0.169 4.169 28 C -0.001 4.001 29 C 0.005 3.995 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.222 0.778 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.145 0.855 46 H 0.094 0.906 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.091 0.909 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.640 -28.974 0.026 29.020 hybrid contribution -0.167 2.360 -0.366 2.394 sum -1.807 -26.614 -0.340 26.677 Atomic orbital electron populations 1.21475 0.92675 1.01108 1.01429 1.22340 0.96400 0.96105 0.94058 1.21434 0.95758 0.91415 0.85921 1.45265 1.70289 1.10304 1.08114 1.19304 1.41918 0.83829 0.91336 0.90483 1.25831 1.01852 1.00448 0.97027 1.70080 1.55109 1.25033 1.08806 0.85103 0.76750 0.79496 0.78517 1.18791 1.22066 1.21984 1.22099 0.94239 0.85498 0.97847 1.23015 0.97827 0.94423 0.96292 0.88505 1.22367 0.98433 0.98564 0.81627 1.48760 1.63118 1.07222 1.14915 1.17126 0.76286 0.81395 0.84913 1.90706 1.52625 1.86240 1.17129 1.19713 1.10490 0.93353 1.08996 1.24455 0.96881 0.95372 0.93913 1.77054 1.13757 1.03716 1.19029 1.48926 1.28551 1.09103 1.27091 1.21646 0.94851 0.89152 0.92492 1.20703 0.95223 0.98135 0.96572 1.21734 1.04639 0.91853 0.97710 1.22025 0.94752 1.04374 0.95705 1.22376 1.00325 0.72830 1.04601 1.22252 0.98575 0.82764 0.95906 0.93007 0.91845 0.93320 0.93850 0.97901 0.94249 0.95163 0.92263 0.90218 0.88470 0.77832 0.89196 0.88546 0.91038 0.87776 0.85515 0.90597 0.88192 0.87444 0.90883 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.68 8.57 71.98 0.62 -3.06 16 2 C -0.09 -3.12 1.07 -50.67 -0.05 -3.17 16 3 C 0.18 8.54 4.97 86.52 0.43 8.97 16 4 N -0.62 -30.44 3.34 -686.20 -2.29 -32.74 16 5 C -0.23 -12.77 10.35 84.04 0.87 -11.90 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.06 -3.19 5.42 84.86 0.46 -2.73 16 8 N -0.94 -56.16 11.19 21.65 0.24 -55.92 16 9 Si 0.97 44.99 29.56 68.60 2.03 47.02 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 C 0.13 4.92 6.78 86.65 0.59 5.51 16 14 C -0.09 -3.01 3.73 -9.15 -0.03 -3.04 16 15 H 0.10 2.86 7.93 -2.39 -0.02 2.84 16 16 C 0.11 2.99 5.13 86.50 0.44 3.44 16 17 N -0.61 -18.76 3.35 -815.39 -2.73 -21.49 16 18 C 0.61 19.61 7.72 86.66 0.67 20.28 16 19 O -0.59 -22.09 16.21 -4.04 -0.07 -22.15 16 20 C -0.31 -8.38 5.66 -20.24 -0.11 -8.49 16 21 C 0.08 1.93 10.02 85.67 0.86 2.79 16 22 N -0.32 -7.62 12.54 -56.07 -0.70 -8.33 16 23 N -0.36 -7.12 4.01 -332.31 -1.33 -8.45 16 24 C 0.15 3.44 6.65 41.98 0.28 3.72 16 25 C -0.07 -1.17 5.84 30.03 0.18 -0.99 16 26 C -0.12 -1.09 5.98 30.80 0.18 -0.90 16 27 C -0.13 -0.76 5.93 30.73 0.18 -0.58 16 28 C 0.12 1.21 7.27 86.43 0.63 1.84 16 29 C 0.13 4.38 6.30 86.21 0.54 4.92 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 2.33 6.69 -2.39 -0.02 2.32 16 34 H 0.00 0.16 7.18 -2.38 -0.02 0.14 16 35 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 36 H 0.03 1.15 7.22 -2.39 -0.02 1.14 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.01 7.06 -2.39 -0.02 2.00 16 39 H 0.10 2.17 6.08 -2.39 -0.01 2.16 16 40 H 0.21 4.02 6.71 -2.91 -0.02 4.00 16 41 H 0.09 1.93 7.35 -2.38 -0.02 1.91 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 0.67 8.12 -2.38 -0.02 0.65 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.08 0.52 8.12 -2.39 -0.02 0.51 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 2.52 7.67 -2.39 -0.02 2.51 16 50 H 0.06 2.25 7.11 -2.38 -0.02 2.23 16 Total: -1.00 -73.75 385.56 2.81 -70.95 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.94 Total: 14.52 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.72 Total: 16.59 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.82 Total: -126.93 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.15 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.75 2.81 -70.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092174577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.420 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds