Wall clock time and date at job start Wed Apr 1 2020 03:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54070 * 112.58249 * 2 1 4 4 N 1.48331 * 104.51178 * 97.43690 * 3 2 1 5 5 C 1.36932 * 128.19850 * 221.79178 * 4 3 2 6 6 H 1.08001 * 119.99772 * 15.73957 * 5 4 3 7 7 C 1.38806 * 120.00195 * 195.74114 * 5 4 3 8 8 N 1.31612 * 120.00225 * 9.19084 * 7 5 4 9 9 Si 1.86806 * 119.99895 * 189.19098 * 7 5 4 10 10 H 1.48501 * 109.47329 * 265.15974 * 9 7 5 11 11 H 1.48507 * 109.47053 * 145.16255 * 9 7 5 12 12 H 1.48498 * 109.46989 * 25.16402 * 9 7 5 13 13 C 1.48331 * 103.60541 * 41.53973 * 4 3 2 14 14 C 1.54455 * 104.32127 * 318.42628 * 13 4 3 15 15 H 1.09002 * 112.30217 * 263.01157 * 14 13 4 16 16 C 1.53750 * 109.01039 * 137.92819 * 14 13 4 17 17 N 1.47194 * 106.42761 * 229.45943 * 16 14 13 18 18 C 1.34780 * 126.70222 * 211.41072 * 17 16 14 19 19 O 1.21287 * 119.99689 * 179.97438 * 18 17 16 20 20 C 1.50694 * 120.00222 * 359.96591 * 18 17 16 21 21 H 1.09011 * 109.47040 * 60.00674 * 20 18 17 22 22 C 1.53113 * 109.47958 * 180.02562 * 20 18 17 23 23 C 1.53352 * 109.53526 * 190.01157 * 22 20 18 24 24 C 1.50870 * 108.41303 * 310.02793 * 23 22 20 25 25 N 1.33572 * 128.03487 * 196.64892 * 24 23 22 26 26 C 1.30746 * 109.14929 * 179.97438 * 25 24 23 27 27 N 1.35314 * 108.76767 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.50149 * 180.02562 * 27 26 25 29 29 C 1.35033 * 123.98374 * 16.64168 * 24 23 22 30 30 C 1.50648 * 124.45736 * 0.19234 * 29 24 23 31 31 C 1.47195 * 106.59494 * 31.36852 * 17 16 14 32 32 H 1.09001 * 109.47083 * 302.11170 * 1 2 3 33 33 H 1.09007 * 109.47160 * 62.10746 * 1 2 3 34 34 H 1.08993 * 109.47439 * 182.10619 * 1 2 3 35 35 H 1.08995 * 110.39563 * 338.65322 * 3 2 1 36 36 H 1.08998 * 110.34036 * 216.19612 * 3 2 1 37 37 H 0.97002 * 120.00352 * 179.97438 * 8 7 5 38 38 H 1.08996 * 110.46642 * 77.13827 * 13 4 3 39 39 H 1.09000 * 110.46445 * 199.59214 * 13 4 3 40 40 H 1.08998 * 110.06495 * 348.69626 * 16 14 13 41 41 H 1.08996 * 110.06505 * 110.22022 * 16 14 13 42 42 H 1.09004 * 109.46265 * 310.02929 * 22 20 18 43 43 H 1.08997 * 109.46180 * 69.99217 * 22 20 18 44 44 H 1.09000 * 109.67642 * 69.74883 * 23 22 20 45 45 H 1.08993 * 109.67859 * 190.25551 * 23 22 20 46 46 H 1.08005 * 125.62330 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.68158 * 256.66999 * 30 29 24 48 48 H 1.09001 * 109.68542 * 136.11864 * 30 29 24 49 49 H 1.08993 * 110.06293 * 87.87357 * 31 17 16 50 50 H 1.09004 * 110.06619 * 209.33677 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1216 1.4226 0.0000 4 7 2.4359 1.6944 1.4239 5 6 2.2330 2.8498 2.1302 6 1 1.5743 3.6120 1.7410 7 6 2.8740 3.0414 3.3465 8 7 3.8108 2.2031 3.7359 9 14 2.4069 4.4893 4.4305 10 1 3.3280 5.6235 4.1656 11 1 2.5085 4.0921 5.8578 12 1 1.0128 4.9031 4.1299 13 6 3.0163 0.4163 1.9032 14 6 2.1221 -0.6713 1.2683 15 1 1.3493 -1.0225 1.9521 16 6 3.0122 -1.8160 0.7571 17 7 2.5898 -2.0855 -0.6269 18 6 2.6180 -3.2746 -1.2607 19 8 2.2378 -3.3587 -2.4094 20 6 3.1220 -4.4996 -0.5422 21 1 2.5050 -4.6846 0.3372 22 6 3.0495 -5.7077 -1.4802 23 6 3.3209 -6.9908 -0.6856 24 6 4.5810 -6.7946 0.1205 25 7 5.3397 -7.7276 0.7021 26 6 6.3446 -7.1483 1.3055 27 7 6.2505 -5.8110 1.1218 28 1 6.8619 -5.1378 1.4592 29 6 5.1357 -5.5896 0.3727 30 6 4.5763 -4.2762 -0.1086 31 6 2.1295 -0.8028 -1.1833 32 1 -0.3633 0.5463 0.8705 33 1 -0.3634 0.4808 -0.9083 34 1 -0.3634 -1.0269 0.0378 35 1 1.3889 2.1387 -0.3719 36 1 3.0286 1.4557 -0.6036 37 1 4.2590 2.3372 4.5857 38 1 4.0453 0.3122 1.5592 39 1 2.9718 0.3617 2.9910 40 1 4.0590 -1.5128 0.7762 41 1 2.8684 -2.7046 1.3717 42 1 2.0570 -5.7609 -1.9278 43 1 3.7970 -5.6024 -2.2664 44 1 2.4846 -7.1917 -0.0160 45 1 3.4504 -7.8273 -1.3722 46 1 7.1218 -7.6538 1.8595 47 1 5.1607 -3.9166 -0.9555 48 1 4.6105 -3.5446 0.6987 49 1 2.9691 -0.2618 -1.6197 50 1 1.3634 -0.9763 -1.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092180518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:03 Heat of formation + Delta-G solvation = 46.085322 kcal Electronic energy + Delta-G solvation = -31140.981079 eV Core-core repulsion = 27169.162849 eV Total energy + Delta-G solvation = -3971.818230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.47992 -40.44349 -38.70800 -36.24630 -35.08867 -33.40886 -32.72835 -30.99643 -30.20624 -29.83893 -29.38484 -26.66576 -25.79808 -25.20657 -24.15427 -22.97079 -22.10898 -21.65748 -20.57749 -19.54351 -18.90018 -18.48472 -17.89851 -17.05573 -16.66725 -15.81048 -15.65947 -15.29213 -14.94626 -14.60015 -14.39121 -14.29258 -14.02378 -13.73498 -13.67351 -13.46268 -13.31852 -12.96960 -12.77470 -12.47608 -12.20992 -12.10714 -11.75474 -11.69806 -11.60217 -11.41401 -11.20783 -11.07930 -11.02031 -10.89020 -10.69282 -10.26744 -10.14486 -10.06993 -10.05326 -10.01614 -9.85960 -9.76043 -9.56726 -8.75944 -8.52549 -8.34203 -6.93806 -5.87717 -3.21765 1.81950 2.59074 2.91162 2.93331 3.08788 3.32246 3.38886 3.40179 4.17629 4.38597 4.39615 4.55792 4.57681 4.78644 4.83935 4.94439 5.00373 5.07318 5.13406 5.19738 5.32089 5.36426 5.41200 5.42887 5.52875 5.55219 5.60913 5.64657 5.69053 5.85131 5.88603 5.92706 5.98403 6.03151 6.09146 6.09764 6.13863 6.24276 6.32253 6.37610 6.49664 6.56805 6.63124 6.68949 6.83507 7.16906 7.19247 7.42156 7.62426 7.67233 7.88362 8.11559 8.21535 9.02323 9.65769 10.43491 11.26329 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002859 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.772215 B = 9791.172846 C =11316.348431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C 0.137 3.863 4 N -0.592 5.592 5 C -0.223 4.223 6 H 0.076 0.924 7 C -0.005 4.005 8 N -0.916 5.916 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.163 3.837 14 C -0.119 4.119 15 H 0.082 0.918 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.535 3.465 19 O -0.545 6.545 20 C -0.095 4.095 21 H 0.102 0.898 22 C -0.097 4.097 23 C -0.033 4.033 24 C 0.004 3.996 25 N -0.487 5.487 26 C 0.176 3.824 27 N -0.559 5.559 28 H 0.421 0.579 29 C -0.021 4.021 30 C -0.039 4.039 31 C 0.116 3.884 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.208 0.792 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -15.447 -5.674 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.010 3.990 4 N -0.315 5.315 5 C -0.352 4.352 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.563 5.563 9 Si 0.741 3.259 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.036 3.964 14 C -0.140 4.140 15 H 0.101 0.899 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.323 3.677 19 O -0.423 6.423 20 C -0.116 4.116 21 H 0.120 0.880 22 C -0.136 4.136 23 C -0.072 4.072 24 C -0.126 4.126 25 N -0.206 5.206 26 C -0.107 4.107 27 N -0.162 5.162 28 H 0.259 0.741 29 C -0.138 4.138 30 C -0.077 4.077 31 C -0.007 4.007 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.943 -16.299 -6.135 17.523 hybrid contribution 0.611 1.923 1.078 2.288 sum 2.554 -14.376 -5.057 15.452 Atomic orbital electron populations 1.21563 0.93416 1.00793 1.01894 1.22528 0.95601 0.97186 0.93407 1.21774 0.96657 0.92088 0.88522 1.45025 1.72453 1.09856 1.04191 1.18986 1.21119 0.94146 1.00907 0.90615 1.24865 0.97196 0.98779 0.99374 1.69867 1.25894 1.38199 1.22299 0.86131 0.78068 0.81767 0.79964 1.21544 1.21589 1.20506 1.21737 0.91948 0.82341 1.00350 1.23282 0.98472 0.95487 0.96766 0.89936 1.22408 0.99146 0.98688 0.81499 1.48649 1.63166 1.07863 1.14717 1.20101 0.78226 0.83002 0.86356 1.90689 1.48977 1.85115 1.17479 1.21248 0.96384 0.93762 1.00255 0.88022 1.21433 1.03751 0.91347 0.97026 1.19967 0.92268 0.97996 0.96942 1.20553 0.99674 0.88237 1.04096 1.69968 1.04688 1.33275 1.12678 1.25030 1.01059 0.79979 1.04591 1.42953 1.22114 1.09761 1.41333 0.74060 1.20834 0.91960 0.97993 1.02994 1.20130 0.94139 0.92008 1.01470 1.22403 0.98929 0.83031 0.96329 0.91700 0.93023 0.93472 0.93166 0.95547 0.93638 0.95908 0.89267 0.90877 0.91141 0.89849 0.90989 0.90514 0.90077 0.77560 0.89906 0.89448 0.91304 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.64 37.15 0.32 -1.45 16 2 C -0.08 -1.36 1.10 -151.68 -0.17 -1.52 16 3 C 0.14 2.61 6.40 -2.48 -0.02 2.60 16 4 N -0.59 -13.94 3.38 -168.72 -0.57 -14.51 16 5 C -0.22 -5.86 10.37 -15.06 -0.16 -6.02 16 6 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 7 C -0.01 -0.14 5.40 -17.44 -0.09 -0.23 16 8 N -0.92 -25.31 10.88 55.49 0.60 -24.70 16 9 Si 0.91 21.06 29.56 -169.99 -5.03 16.04 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.16 3.46 5.50 -2.27 -0.01 3.45 16 14 C -0.12 -1.96 3.71 -88.28 -0.33 -2.29 16 15 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 16 C 0.11 1.41 4.80 -3.27 -0.02 1.40 16 17 N -0.61 -8.50 3.31 -170.84 -0.57 -9.07 16 18 C 0.53 7.43 7.22 -10.99 -0.08 7.35 16 19 O -0.54 -9.26 16.04 5.55 0.09 -9.17 16 20 C -0.09 -1.03 1.82 -91.51 -0.17 -1.20 16 21 H 0.10 1.03 7.83 -51.92 -0.41 0.63 16 22 C -0.10 -1.02 4.64 -26.49 -0.12 -1.14 16 23 C -0.03 -0.34 6.30 -27.62 -0.17 -0.51 16 24 C 0.00 0.05 6.98 -82.89 -0.58 -0.53 16 25 N -0.49 -6.00 11.25 -10.74 -0.12 -6.12 16 26 C 0.18 1.58 13.05 -89.92 -1.17 0.41 16 27 N -0.56 -4.62 6.15 -10.28 -0.06 -4.69 16 28 H 0.42 2.22 8.96 -40.82 -0.37 1.85 16 29 C -0.02 -0.22 7.08 -81.85 -0.58 -0.80 16 30 C -0.04 -0.38 5.20 -27.70 -0.14 -0.53 16 31 C 0.12 1.72 6.26 -2.58 -0.02 1.70 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 36 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 37 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.02 0.51 7.18 -51.93 -0.37 0.13 16 39 H 0.09 2.17 6.45 -51.93 -0.34 1.83 16 40 H 0.07 0.98 6.72 -51.93 -0.35 0.63 16 41 H 0.07 0.81 6.78 -51.93 -0.35 0.45 16 42 H 0.08 0.90 7.77 -51.93 -0.40 0.49 16 43 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.21 1.01 8.06 -52.48 -0.42 0.58 16 47 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 48 H 0.09 0.81 5.59 -51.93 -0.29 0.52 16 49 H 0.07 1.03 7.15 -51.93 -0.37 0.66 16 50 H 0.07 1.11 7.64 -51.93 -0.40 0.71 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -32.50 382.61 -11.15 -43.65 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.76 Total: 2.13 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.50 Total: 0.68 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.72 Total: -59.09 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.50 -11.15 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092180518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.736 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds