Wall clock time and date at job start Wed Apr 1 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54070 * 112.58249 * 2 1 4 4 N 1.48331 * 104.51178 * 97.43690 * 3 2 1 5 5 C 1.36932 * 128.19850 * 221.79178 * 4 3 2 6 6 H 1.08001 * 119.99772 * 15.73957 * 5 4 3 7 7 C 1.38806 * 120.00195 * 195.74114 * 5 4 3 8 8 N 1.31612 * 120.00225 * 9.19084 * 7 5 4 9 9 Si 1.86806 * 119.99895 * 189.19098 * 7 5 4 10 10 H 1.48501 * 109.47329 * 265.15974 * 9 7 5 11 11 H 1.48507 * 109.47053 * 145.16255 * 9 7 5 12 12 H 1.48498 * 109.46989 * 25.16402 * 9 7 5 13 13 C 1.48331 * 103.60541 * 41.53973 * 4 3 2 14 14 C 1.54455 * 104.32127 * 318.42628 * 13 4 3 15 15 H 1.09002 * 112.30217 * 263.01157 * 14 13 4 16 16 C 1.53750 * 109.01039 * 137.92819 * 14 13 4 17 17 N 1.47194 * 106.42761 * 229.45943 * 16 14 13 18 18 C 1.34780 * 126.70222 * 211.41072 * 17 16 14 19 19 O 1.21287 * 119.99689 * 179.97438 * 18 17 16 20 20 C 1.50694 * 120.00222 * 359.96591 * 18 17 16 21 21 H 1.09011 * 109.47040 * 60.00674 * 20 18 17 22 22 C 1.53113 * 109.47958 * 180.02562 * 20 18 17 23 23 C 1.53352 * 109.53526 * 190.01157 * 22 20 18 24 24 C 1.50870 * 108.41303 * 310.02793 * 23 22 20 25 25 N 1.33572 * 128.03487 * 196.64892 * 24 23 22 26 26 C 1.30746 * 109.14929 * 179.97438 * 25 24 23 27 27 N 1.35314 * 108.76767 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.50149 * 180.02562 * 27 26 25 29 29 C 1.35033 * 123.98374 * 16.64168 * 24 23 22 30 30 C 1.50648 * 124.45736 * 0.19234 * 29 24 23 31 31 C 1.47195 * 106.59494 * 31.36852 * 17 16 14 32 32 H 1.09001 * 109.47083 * 302.11170 * 1 2 3 33 33 H 1.09007 * 109.47160 * 62.10746 * 1 2 3 34 34 H 1.08993 * 109.47439 * 182.10619 * 1 2 3 35 35 H 1.08995 * 110.39563 * 338.65322 * 3 2 1 36 36 H 1.08998 * 110.34036 * 216.19612 * 3 2 1 37 37 H 0.97002 * 120.00352 * 179.97438 * 8 7 5 38 38 H 1.08996 * 110.46642 * 77.13827 * 13 4 3 39 39 H 1.09000 * 110.46445 * 199.59214 * 13 4 3 40 40 H 1.08998 * 110.06495 * 348.69626 * 16 14 13 41 41 H 1.08996 * 110.06505 * 110.22022 * 16 14 13 42 42 H 1.09004 * 109.46265 * 310.02929 * 22 20 18 43 43 H 1.08997 * 109.46180 * 69.99217 * 22 20 18 44 44 H 1.09000 * 109.67642 * 69.74883 * 23 22 20 45 45 H 1.08993 * 109.67859 * 190.25551 * 23 22 20 46 46 H 1.08005 * 125.62330 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.68158 * 256.66999 * 30 29 24 48 48 H 1.09001 * 109.68542 * 136.11864 * 30 29 24 49 49 H 1.08993 * 110.06293 * 87.87357 * 31 17 16 50 50 H 1.09004 * 110.06619 * 209.33677 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1216 1.4226 0.0000 4 7 2.4359 1.6944 1.4239 5 6 2.2330 2.8498 2.1302 6 1 1.5743 3.6120 1.7410 7 6 2.8740 3.0414 3.3465 8 7 3.8108 2.2031 3.7359 9 14 2.4069 4.4893 4.4305 10 1 3.3280 5.6235 4.1656 11 1 2.5085 4.0921 5.8578 12 1 1.0128 4.9031 4.1299 13 6 3.0163 0.4163 1.9032 14 6 2.1221 -0.6713 1.2683 15 1 1.3493 -1.0225 1.9521 16 6 3.0122 -1.8160 0.7571 17 7 2.5898 -2.0855 -0.6269 18 6 2.6180 -3.2746 -1.2607 19 8 2.2378 -3.3587 -2.4094 20 6 3.1220 -4.4996 -0.5422 21 1 2.5050 -4.6846 0.3372 22 6 3.0495 -5.7077 -1.4802 23 6 3.3209 -6.9908 -0.6856 24 6 4.5810 -6.7946 0.1205 25 7 5.3397 -7.7276 0.7021 26 6 6.3446 -7.1483 1.3055 27 7 6.2505 -5.8110 1.1218 28 1 6.8619 -5.1378 1.4592 29 6 5.1357 -5.5896 0.3727 30 6 4.5763 -4.2762 -0.1086 31 6 2.1295 -0.8028 -1.1833 32 1 -0.3633 0.5463 0.8705 33 1 -0.3634 0.4808 -0.9083 34 1 -0.3634 -1.0269 0.0378 35 1 1.3889 2.1387 -0.3719 36 1 3.0286 1.4557 -0.6036 37 1 4.2590 2.3372 4.5857 38 1 4.0453 0.3122 1.5592 39 1 2.9718 0.3617 2.9910 40 1 4.0590 -1.5128 0.7762 41 1 2.8684 -2.7046 1.3717 42 1 2.0570 -5.7609 -1.9278 43 1 3.7970 -5.6024 -2.2664 44 1 2.4846 -7.1917 -0.0160 45 1 3.4504 -7.8273 -1.3722 46 1 7.1218 -7.6538 1.8595 47 1 5.1607 -3.9166 -0.9555 48 1 4.6105 -3.5446 0.6987 49 1 2.9691 -0.2618 -1.6197 50 1 1.3634 -0.9763 -1.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092180518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:02 Heat of formation + Delta-G solvation = 27.500515 kcal Electronic energy + Delta-G solvation = -31141.786977 eV Core-core repulsion = 27169.162849 eV Total energy + Delta-G solvation = -3972.624128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.21617 -41.64943 -39.97173 -37.17122 -36.58002 -34.51874 -34.00815 -32.52435 -31.52250 -30.89034 -30.22533 -28.01140 -27.33354 -26.65000 -25.08897 -24.11579 -23.19642 -22.44489 -22.17517 -20.53827 -20.05062 -19.56919 -18.66946 -18.60938 -18.04143 -16.93120 -16.81011 -16.55863 -16.20876 -15.87329 -15.68280 -15.24730 -15.20920 -14.90774 -14.83485 -14.62133 -14.31000 -14.06389 -13.94166 -13.62936 -13.53539 -13.22859 -13.13623 -13.01108 -12.91637 -12.68662 -12.57670 -12.53677 -12.24269 -12.03093 -11.91745 -11.86829 -11.76238 -11.54037 -11.39837 -11.34779 -10.90780 -10.78652 -10.73885 -10.67980 -9.71041 -9.09672 -8.83466 -7.88221 -5.22646 1.09825 1.47943 1.49130 1.53787 1.58006 1.93434 2.16389 2.28462 2.50497 3.25999 3.32901 3.48347 3.51950 3.65697 3.77135 3.81034 3.93881 3.98124 4.12576 4.20151 4.22027 4.26741 4.29587 4.35834 4.43992 4.55916 4.58004 4.60463 4.71554 4.75304 4.76492 4.82134 4.89204 4.94952 4.98998 5.04568 5.08951 5.13919 5.16094 5.25178 5.29145 5.32784 5.35419 5.43671 5.48873 5.60468 5.73906 5.81241 6.22860 6.54603 6.59427 7.05629 7.10023 7.15956 7.72112 8.51880 9.24776 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002859 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.772215 B = 9791.172846 C =11316.348431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C 0.135 3.865 4 N -0.617 5.617 5 C -0.233 4.233 6 H 0.076 0.924 7 C -0.058 4.058 8 N -0.942 5.942 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.271 1.271 13 C 0.170 3.830 14 C -0.109 4.109 15 H 0.086 0.914 16 C 0.115 3.885 17 N -0.609 5.609 18 C 0.538 3.462 19 O -0.576 6.576 20 C -0.087 4.087 21 H 0.116 0.884 22 C -0.089 4.089 23 C -0.029 4.029 24 C -0.019 4.019 25 N -0.529 5.529 26 C 0.185 3.815 27 N -0.551 5.551 28 H 0.436 0.564 29 C -0.029 4.029 30 C -0.031 4.031 31 C 0.121 3.879 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.249 0.751 38 H 0.010 0.990 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.244 0.756 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -16.401 -5.614 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C 0.009 3.991 4 N -0.341 5.341 5 C -0.362 4.362 6 H 0.093 0.907 7 C -0.252 4.252 8 N -0.590 5.590 9 Si 0.800 3.200 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.196 1.196 13 C 0.044 3.956 14 C -0.130 4.130 15 H 0.104 0.896 16 C -0.008 4.008 17 N -0.341 5.341 18 C 0.328 3.672 19 O -0.456 6.456 20 C -0.109 4.109 21 H 0.133 0.867 22 C -0.128 4.128 23 C -0.067 4.067 24 C -0.148 4.148 25 N -0.249 5.249 26 C -0.098 4.098 27 N -0.154 5.154 28 H 0.276 0.724 29 C -0.146 4.146 30 C -0.070 4.070 31 C -0.002 4.002 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.260 0.740 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.861 -17.245 -6.091 18.384 hybrid contribution 0.679 2.220 1.012 2.532 sum 2.540 -15.026 -5.079 16.063 Atomic orbital electron populations 1.21508 0.92160 1.01549 1.01845 1.22399 0.96445 0.95189 0.93724 1.21909 0.96801 0.94119 0.86284 1.45298 1.72666 1.09969 1.06154 1.19288 1.20573 0.95039 1.01276 0.90659 1.25574 0.97626 1.01288 1.00681 1.70032 1.26976 1.39688 1.22352 0.85185 0.77987 0.78928 0.77934 1.21641 1.21974 1.19591 1.21570 0.92258 0.83276 0.98512 1.23096 0.98082 0.95118 0.96720 0.89611 1.22313 0.98405 0.98604 0.81476 1.48628 1.63042 1.07670 1.14752 1.20562 0.77338 0.83361 0.85962 1.90680 1.50382 1.85533 1.18988 1.21229 0.97165 0.92165 1.00339 0.86660 1.21339 1.03193 0.91505 0.96730 1.19930 0.92245 0.97635 0.96891 1.20828 1.00394 0.88813 1.04809 1.69951 1.06195 1.34396 1.14348 1.25771 1.00656 0.80158 1.03199 1.42953 1.21715 1.10111 1.40640 0.72356 1.20831 0.92688 0.97625 1.03501 1.20046 0.93285 0.92071 1.01586 1.22272 0.98924 0.83379 0.95671 0.93388 0.91595 0.92128 0.93007 0.95585 0.94221 0.97224 0.92663 0.90621 0.88332 0.90185 0.91968 0.89872 0.90040 0.73971 0.90210 0.88591 0.91470 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.64 71.98 0.62 -2.52 16 2 C -0.08 -2.30 1.10 -50.35 -0.06 -2.36 16 3 C 0.13 5.10 6.40 86.39 0.55 5.65 16 4 N -0.62 -29.30 3.38 -687.70 -2.32 -31.62 16 5 C -0.23 -12.34 10.37 84.03 0.87 -11.47 16 6 H 0.08 3.88 7.85 -2.91 -0.02 3.86 16 7 C -0.06 -3.11 5.40 84.86 0.46 -2.65 16 8 N -0.94 -53.12 10.88 21.65 0.24 -52.89 16 9 Si 0.97 43.69 29.56 68.60 2.03 45.72 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.17 7.29 5.50 86.52 0.48 7.77 16 14 C -0.11 -3.47 3.71 -9.28 -0.03 -3.51 16 15 H 0.09 2.70 7.93 -2.39 -0.02 2.69 16 16 C 0.11 2.82 4.80 86.50 0.42 3.24 16 17 N -0.61 -15.63 3.31 -812.79 -2.69 -18.33 16 18 C 0.54 13.89 7.22 87.65 0.63 14.52 16 19 O -0.58 -18.79 16.04 -3.05 -0.05 -18.84 16 20 C -0.09 -1.72 1.82 -11.37 -0.02 -1.74 16 21 H 0.12 2.01 7.83 -2.38 -0.02 1.99 16 22 C -0.09 -1.77 4.64 30.75 0.14 -1.63 16 23 C -0.03 -0.55 6.30 30.02 0.19 -0.36 16 24 C -0.02 -0.42 6.98 41.61 0.29 -0.13 16 25 N -0.53 -12.24 11.25 -187.89 -2.11 -14.35 16 26 C 0.19 2.88 13.05 180.10 2.35 5.23 16 27 N -0.55 -7.79 6.15 -186.45 -1.15 -8.93 16 28 H 0.44 3.45 8.96 -92.71 -0.83 2.62 16 29 C -0.03 -0.55 7.08 41.14 0.29 -0.26 16 30 C -0.03 -0.55 5.20 29.96 0.16 -0.40 16 31 C 0.12 3.37 6.26 86.95 0.54 3.91 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 36 H 0.03 1.00 7.18 -2.39 -0.02 0.98 16 37 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.01 0.44 7.18 -2.39 -0.02 0.42 16 39 H 0.05 2.75 6.45 -2.39 -0.02 2.73 16 40 H 0.08 1.89 6.72 -2.39 -0.02 1.87 16 41 H 0.10 1.93 6.78 -2.39 -0.02 1.91 16 42 H 0.08 1.64 7.77 -2.38 -0.02 1.62 16 43 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.24 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 48 H 0.10 1.52 5.59 -2.39 -0.01 1.51 16 49 H 0.07 1.92 7.15 -2.39 -0.02 1.90 16 50 H 0.08 2.15 7.64 -2.39 -0.02 2.13 16 Total: -1.00 -70.79 382.61 1.95 -68.84 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.13 Total: 17.10 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 7.88 Total: 13.29 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -8.04 Total: -126.12 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.79 1.95 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092180518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.339 kcal (2) G-P(sol) polarization free energy of solvation -70.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds