Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53754 * 112.06495 * 2 1 4 4 N 1.47343 * 106.42273 * 141.00438 * 3 2 1 5 5 C 1.36936 * 126.77535 * 148.65045 * 4 3 2 6 6 H 1.08004 * 119.99607 * 326.54339 * 5 4 3 7 7 C 1.38804 * 120.00239 * 146.53722 * 5 4 3 8 8 N 1.31621 * 120.00092 * 168.58275 * 7 5 4 9 9 Si 1.86805 * 119.99982 * 348.58855 * 7 5 4 10 10 H 1.48501 * 109.47315 * 84.95639 * 9 7 5 11 11 H 1.48505 * 109.47145 * 204.95865 * 9 7 5 12 12 H 1.48503 * 109.46960 * 324.95711 * 9 7 5 13 13 C 1.47205 * 106.52047 * 328.67068 * 4 3 2 14 14 C 1.53758 * 106.45553 * 31.33461 * 13 4 3 15 15 H 1.08993 * 112.06935 * 218.96487 * 14 13 4 16 16 C 1.54316 * 109.07371 * 93.17159 * 14 13 4 17 17 N 1.48115 * 104.71302 * 223.73621 * 16 14 13 18 18 C 1.34775 * 127.84487 * 219.76597 * 17 16 14 19 19 O 1.21285 * 120.00194 * 174.97925 * 18 17 16 20 20 C 1.50700 * 119.99935 * 354.97917 * 18 17 16 21 21 H 1.08994 * 109.47663 * 334.30300 * 20 18 17 22 22 C 1.53126 * 109.47546 * 214.29225 * 20 18 17 23 23 C 1.53349 * 109.53121 * 169.99350 * 22 20 18 24 24 C 1.50867 * 108.41324 * 49.97757 * 23 22 20 25 25 N 1.33576 * 128.03278 * 163.32138 * 24 23 22 26 26 C 1.30749 * 109.14618 * 180.02562 * 25 24 23 27 27 N 1.35314 * 108.76759 * 359.97438 * 26 25 24 28 28 H 0.97004 * 126.49225 * 179.97438 * 27 26 25 29 29 C 1.35029 * 123.98845 * 343.34560 * 24 23 22 30 30 C 1.50650 * 124.45232 * 359.82572 * 29 24 23 31 31 C 1.48113 * 104.31069 * 39.78340 * 17 16 14 32 32 H 1.09001 * 109.47195 * 301.82895 * 1 2 3 33 33 H 1.08998 * 109.47218 * 61.82664 * 1 2 3 34 34 H 1.08994 * 109.47300 * 181.82987 * 1 2 3 35 35 H 1.09004 * 110.06897 * 260.23580 * 3 2 1 36 36 H 1.09001 * 110.07316 * 21.70824 * 3 2 1 37 37 H 0.97002 * 119.99881 * 180.02562 * 8 7 5 38 38 H 1.09004 * 110.06605 * 272.07170 * 13 4 3 39 39 H 1.08996 * 110.06742 * 150.60003 * 13 4 3 40 40 H 1.08992 * 110.39203 * 342.54831 * 16 14 13 41 41 H 1.09004 * 110.38923 * 104.92985 * 16 14 13 42 42 H 1.08997 * 109.46330 * 290.01952 * 22 20 18 43 43 H 1.09006 * 109.45823 * 49.99185 * 22 20 18 44 44 H 1.08997 * 109.67360 * 169.70488 * 23 22 20 45 45 H 1.08999 * 109.67590 * 290.24484 * 23 22 20 46 46 H 1.08004 * 125.61993 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.68497 * 223.86325 * 30 29 24 48 48 H 1.09008 * 109.68341 * 103.31257 * 30 29 24 49 49 H 1.08993 * 110.38779 * 201.41281 * 31 17 16 50 50 H 1.09002 * 110.48036 * 79.07882 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4249 0.0000 4 7 3.2821 1.3984 0.8893 5 6 4.4151 2.1587 0.7740 6 1 4.7827 2.4352 -0.2032 7 6 5.0911 2.5741 1.9129 8 7 6.2902 3.1068 1.8090 9 14 4.2990 2.3771 3.5932 10 1 4.5627 1.0091 4.1075 11 1 4.8710 3.3770 4.5304 12 1 2.8337 2.5885 3.4776 13 6 2.9989 0.3931 1.9268 14 6 2.1156 -0.6779 1.2659 15 1 1.3365 -1.0379 1.9378 16 6 3.0145 -1.8103 0.7265 17 7 2.4713 -2.1138 -0.6177 18 6 2.3212 -3.3222 -1.1953 19 8 1.7738 -3.4152 -2.2736 20 6 2.8336 -4.5580 -0.5014 21 1 3.6512 -4.2871 0.1665 22 6 3.3375 -5.5581 -1.5457 23 6 4.0829 -6.7000 -0.8443 24 6 3.2136 -7.2207 0.2735 25 7 3.3238 -8.3784 0.9306 26 6 2.3756 -8.4543 1.8277 27 7 1.6259 -7.3296 1.7648 28 1 0.8555 -7.1183 2.3151 29 6 2.1566 -6.5518 0.7820 30 6 1.6993 -5.1959 0.3109 31 6 2.1309 -0.7878 -1.1830 32 1 -0.3634 0.5420 0.8731 33 1 -0.3633 0.4852 -0.9059 34 1 -0.3633 -1.0271 0.0328 35 1 2.4091 1.7064 -1.0090 36 1 1.3666 2.1290 0.3787 37 1 6.7627 3.3968 2.6050 38 1 2.4677 0.8544 2.7594 39 1 3.9288 -0.0537 2.2783 40 1 4.0477 -1.4717 0.6510 41 1 2.9475 -2.6876 1.3701 42 1 2.4903 -5.9632 -2.0991 43 1 4.0137 -5.0530 -2.2356 44 1 4.2828 -7.5001 -1.5569 45 1 5.0226 -6.3284 -0.4357 46 1 2.2169 -9.2787 2.5070 47 1 1.4655 -4.5681 1.1706 48 1 0.8146 -5.3043 -0.3166 49 1 1.3966 -0.8927 -1.9816 50 1 3.0268 -0.2903 -1.5546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092180521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 46.193242 kcal Electronic energy + Delta-G solvation = -31295.134922 eV Core-core repulsion = 27323.321372 eV Total energy + Delta-G solvation = -3971.813550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54012 -40.51951 -38.91896 -36.27193 -35.11421 -33.43880 -32.84612 -31.49452 -30.31614 -30.12337 -29.49449 -26.78664 -26.00670 -25.59359 -24.10984 -22.98040 -22.19403 -21.77329 -20.71143 -19.61703 -19.02100 -18.56439 -18.07331 -17.12334 -16.72303 -16.01735 -15.67055 -15.55005 -15.13221 -14.59989 -14.53645 -14.34400 -14.08693 -13.81213 -13.65208 -13.52908 -13.44241 -12.95783 -12.77757 -12.72463 -12.54009 -12.20642 -12.10423 -12.01392 -11.75492 -11.72851 -11.28190 -11.21107 -11.11645 -11.00360 -10.77266 -10.51422 -10.34595 -10.17958 -10.13258 -10.09406 -10.03699 -9.67216 -9.58840 -8.76405 -8.57486 -8.40332 -6.97762 -6.03449 -3.49379 1.74672 2.52681 2.83136 2.88000 3.05457 3.25714 3.39463 3.41997 4.13945 4.32200 4.44510 4.47896 4.54787 4.63564 4.73393 4.85484 4.89132 4.95032 5.01028 5.12029 5.16215 5.25452 5.30110 5.33193 5.38704 5.40777 5.47657 5.51099 5.62839 5.68262 5.77325 5.80621 5.85744 5.88794 5.97733 6.02109 6.03720 6.08845 6.12725 6.17950 6.23678 6.42391 6.44230 6.50822 6.58334 6.64852 6.68369 7.09235 7.66505 7.77305 7.82487 8.19586 8.26206 8.74467 9.58130 10.15398 11.12581 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003047 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.378470 B = 9187.141696 C = 9864.833963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C 0.141 3.859 4 N -0.601 5.601 5 C -0.244 4.244 6 H 0.088 0.912 7 C 0.030 3.970 8 N -0.910 5.910 9 Si 0.891 3.109 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.271 1.271 13 C 0.115 3.885 14 C -0.109 4.109 15 H 0.085 0.915 16 C 0.109 3.891 17 N -0.617 5.617 18 C 0.539 3.461 19 O -0.545 6.545 20 C -0.096 4.096 21 H 0.096 0.904 22 C -0.099 4.099 23 C -0.034 4.034 24 C 0.008 3.992 25 N -0.486 5.486 26 C 0.176 3.824 27 N -0.561 5.561 28 H 0.420 0.580 29 C -0.023 4.023 30 C -0.028 4.028 31 C 0.121 3.879 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.208 0.792 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -18.993 0.233 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.090 4.090 3 C 0.015 3.985 4 N -0.327 5.327 5 C -0.371 4.371 6 H 0.105 0.895 7 C -0.170 4.170 8 N -0.553 5.553 9 Si 0.721 3.279 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.196 1.196 13 C -0.011 4.011 14 C -0.129 4.129 15 H 0.103 0.897 16 C -0.014 4.014 17 N -0.349 5.349 18 C 0.328 3.672 19 O -0.423 6.423 20 C -0.118 4.118 21 H 0.114 0.886 22 C -0.137 4.137 23 C -0.072 4.072 24 C -0.122 4.122 25 N -0.204 5.204 26 C -0.106 4.106 27 N -0.163 5.163 28 H 0.257 0.743 29 C -0.140 4.140 30 C -0.067 4.067 31 C -0.001 4.001 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.225 0.775 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.209 -19.604 -0.501 22.588 hybrid contribution -1.309 0.611 1.848 2.346 sum -12.518 -18.993 1.347 22.787 Atomic orbital electron populations 1.21616 0.93370 1.01191 1.01918 1.22281 0.95138 0.97281 0.94285 1.21466 0.89649 0.91721 0.95693 1.44708 1.15698 1.42040 1.30217 1.18569 0.98528 1.25810 0.94224 0.89498 1.25379 0.96538 0.97002 0.98057 1.69747 1.11993 1.44189 1.29359 0.86795 0.79623 0.76845 0.84630 1.21175 1.22911 1.19615 1.21828 0.97090 0.89487 0.92692 1.22959 0.97511 0.95645 0.96799 0.89680 1.22604 0.98724 0.97539 0.82523 1.49094 1.62156 1.05660 1.18009 1.20028 0.78881 0.82979 0.85326 1.90689 1.43659 1.85959 1.21984 1.21268 0.98785 0.93310 0.98423 0.88551 1.21455 1.00998 0.94652 0.96584 1.19972 0.96539 0.97121 0.93601 1.20556 0.98064 0.92330 1.01241 1.69982 1.22267 1.20214 1.07979 1.25040 0.91579 0.91847 1.02171 1.42926 1.26993 1.16832 1.29568 0.74257 1.20808 1.00071 0.96911 0.96179 1.19903 0.97933 0.89553 0.99303 1.22461 1.00368 0.81415 0.95823 0.92292 0.92385 0.93044 0.92782 0.95435 0.92522 0.95498 0.92080 0.89601 0.91044 0.90467 0.90389 0.89947 0.90309 0.77538 0.90321 0.89640 0.90470 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.60 37.16 0.32 -1.20 16 2 C -0.09 -1.29 1.08 -152.33 -0.16 -1.46 16 3 C 0.14 2.57 6.18 -3.19 -0.02 2.55 16 4 N -0.60 -13.35 3.02 -171.06 -0.52 -13.87 16 5 C -0.24 -6.53 10.65 -15.06 -0.16 -6.69 16 6 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 7 C 0.03 0.84 5.49 -17.43 -0.10 0.74 16 8 N -0.91 -27.15 13.97 55.49 0.78 -26.37 16 9 Si 0.89 21.62 24.52 -169.99 -4.17 17.45 16 10 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.44 6.43 56.52 0.36 -6.08 16 13 C 0.11 2.22 4.12 -3.26 -0.01 2.21 16 14 C -0.11 -1.60 3.73 -88.44 -0.33 -1.93 16 15 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 16 C 0.11 1.48 6.03 -2.46 -0.01 1.46 16 17 N -0.62 -8.66 3.31 -169.46 -0.56 -9.22 16 18 C 0.54 7.49 6.88 -10.99 -0.08 7.41 16 19 O -0.55 -9.25 16.69 5.55 0.09 -9.16 16 20 C -0.10 -1.04 1.95 -91.50 -0.18 -1.22 16 21 H 0.10 1.01 7.01 -51.93 -0.36 0.64 16 22 C -0.10 -1.04 4.71 -26.49 -0.12 -1.17 16 23 C -0.03 -0.35 6.30 -27.62 -0.17 -0.52 16 24 C 0.01 0.09 6.98 -82.89 -0.58 -0.49 16 25 N -0.49 -5.86 11.25 -10.74 -0.12 -5.98 16 26 C 0.18 1.48 13.05 -89.92 -1.17 0.31 16 27 N -0.56 -4.19 6.14 -10.28 -0.06 -4.25 16 28 H 0.42 1.71 8.96 -40.82 -0.37 1.34 16 29 C -0.02 -0.23 7.08 -81.86 -0.58 -0.81 16 30 C -0.03 -0.26 5.59 -27.70 -0.15 -0.42 16 31 C 0.12 1.82 6.15 -2.47 -0.02 1.80 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.98 7.59 -51.93 -0.39 0.59 16 36 H 0.03 0.51 7.88 -51.93 -0.41 0.10 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.03 0.55 5.66 -51.93 -0.29 0.26 16 39 H 0.06 1.24 6.57 -51.93 -0.34 0.90 16 40 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16 41 H 0.07 0.78 7.15 -51.93 -0.37 0.41 16 42 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 43 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.84 8.11 -51.92 -0.42 0.41 16 49 H 0.08 1.14 7.63 -51.93 -0.40 0.75 16 50 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -33.92 382.92 -10.29 -44.21 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.96 Total: 0.83 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.53 Total: 0.58 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.49 Total: -59.69 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.17 Total: 17.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.92 -10.29 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092180521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.402 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds