Wall clock time and date at job start Wed Apr 1 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53754 * 112.06495 * 2 1 4 4 N 1.47343 * 106.42273 * 141.00438 * 3 2 1 5 5 C 1.36936 * 126.77535 * 148.65045 * 4 3 2 6 6 H 1.08004 * 119.99607 * 326.54339 * 5 4 3 7 7 C 1.38804 * 120.00239 * 146.53722 * 5 4 3 8 8 N 1.31621 * 120.00092 * 168.58275 * 7 5 4 9 9 Si 1.86805 * 119.99982 * 348.58855 * 7 5 4 10 10 H 1.48501 * 109.47315 * 84.95639 * 9 7 5 11 11 H 1.48505 * 109.47145 * 204.95865 * 9 7 5 12 12 H 1.48503 * 109.46960 * 324.95711 * 9 7 5 13 13 C 1.47205 * 106.52047 * 328.67068 * 4 3 2 14 14 C 1.53758 * 106.45553 * 31.33461 * 13 4 3 15 15 H 1.08993 * 112.06935 * 218.96487 * 14 13 4 16 16 C 1.54316 * 109.07371 * 93.17159 * 14 13 4 17 17 N 1.48115 * 104.71302 * 223.73621 * 16 14 13 18 18 C 1.34775 * 127.84487 * 219.76597 * 17 16 14 19 19 O 1.21285 * 120.00194 * 174.97925 * 18 17 16 20 20 C 1.50700 * 119.99935 * 354.97917 * 18 17 16 21 21 H 1.08994 * 109.47663 * 334.30300 * 20 18 17 22 22 C 1.53126 * 109.47546 * 214.29225 * 20 18 17 23 23 C 1.53349 * 109.53121 * 169.99350 * 22 20 18 24 24 C 1.50867 * 108.41324 * 49.97757 * 23 22 20 25 25 N 1.33576 * 128.03278 * 163.32138 * 24 23 22 26 26 C 1.30749 * 109.14618 * 180.02562 * 25 24 23 27 27 N 1.35314 * 108.76759 * 359.97438 * 26 25 24 28 28 H 0.97004 * 126.49225 * 179.97438 * 27 26 25 29 29 C 1.35029 * 123.98845 * 343.34560 * 24 23 22 30 30 C 1.50650 * 124.45232 * 359.82572 * 29 24 23 31 31 C 1.48113 * 104.31069 * 39.78340 * 17 16 14 32 32 H 1.09001 * 109.47195 * 301.82895 * 1 2 3 33 33 H 1.08998 * 109.47218 * 61.82664 * 1 2 3 34 34 H 1.08994 * 109.47300 * 181.82987 * 1 2 3 35 35 H 1.09004 * 110.06897 * 260.23580 * 3 2 1 36 36 H 1.09001 * 110.07316 * 21.70824 * 3 2 1 37 37 H 0.97002 * 119.99881 * 180.02562 * 8 7 5 38 38 H 1.09004 * 110.06605 * 272.07170 * 13 4 3 39 39 H 1.08996 * 110.06742 * 150.60003 * 13 4 3 40 40 H 1.08992 * 110.39203 * 342.54831 * 16 14 13 41 41 H 1.09004 * 110.38923 * 104.92985 * 16 14 13 42 42 H 1.08997 * 109.46330 * 290.01952 * 22 20 18 43 43 H 1.09006 * 109.45823 * 49.99185 * 22 20 18 44 44 H 1.08997 * 109.67360 * 169.70488 * 23 22 20 45 45 H 1.08999 * 109.67590 * 290.24484 * 23 22 20 46 46 H 1.08004 * 125.61993 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.68497 * 223.86325 * 30 29 24 48 48 H 1.09008 * 109.68341 * 103.31257 * 30 29 24 49 49 H 1.08993 * 110.38779 * 201.41281 * 31 17 16 50 50 H 1.09002 * 110.48036 * 79.07882 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4249 0.0000 4 7 3.2821 1.3984 0.8893 5 6 4.4151 2.1587 0.7740 6 1 4.7827 2.4352 -0.2032 7 6 5.0911 2.5741 1.9129 8 7 6.2902 3.1068 1.8090 9 14 4.2990 2.3771 3.5932 10 1 4.5627 1.0091 4.1075 11 1 4.8710 3.3770 4.5304 12 1 2.8337 2.5885 3.4776 13 6 2.9989 0.3931 1.9268 14 6 2.1156 -0.6779 1.2659 15 1 1.3365 -1.0379 1.9378 16 6 3.0145 -1.8103 0.7265 17 7 2.4713 -2.1138 -0.6177 18 6 2.3212 -3.3222 -1.1953 19 8 1.7738 -3.4152 -2.2736 20 6 2.8336 -4.5580 -0.5014 21 1 3.6512 -4.2871 0.1665 22 6 3.3375 -5.5581 -1.5457 23 6 4.0829 -6.7000 -0.8443 24 6 3.2136 -7.2207 0.2735 25 7 3.3238 -8.3784 0.9306 26 6 2.3756 -8.4543 1.8277 27 7 1.6259 -7.3296 1.7648 28 1 0.8555 -7.1183 2.3151 29 6 2.1566 -6.5518 0.7820 30 6 1.6993 -5.1959 0.3109 31 6 2.1309 -0.7878 -1.1830 32 1 -0.3634 0.5420 0.8731 33 1 -0.3633 0.4852 -0.9059 34 1 -0.3633 -1.0271 0.0328 35 1 2.4091 1.7064 -1.0090 36 1 1.3666 2.1290 0.3787 37 1 6.7627 3.3968 2.6050 38 1 2.4677 0.8544 2.7594 39 1 3.9288 -0.0537 2.2783 40 1 4.0477 -1.4717 0.6510 41 1 2.9475 -2.6876 1.3701 42 1 2.4903 -5.9632 -2.0991 43 1 4.0137 -5.0530 -2.2356 44 1 4.2828 -7.5001 -1.5569 45 1 5.0226 -6.3284 -0.4357 46 1 2.2169 -9.2787 2.5070 47 1 1.4655 -4.5681 1.1706 48 1 0.8146 -5.3043 -0.3166 49 1 1.3966 -0.8927 -1.9816 50 1 3.0268 -0.2903 -1.5546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092180521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:05 Heat of formation + Delta-G solvation = 24.608552 kcal Electronic energy + Delta-G solvation = -31296.070904 eV Core-core repulsion = 27323.321372 eV Total energy + Delta-G solvation = -3972.749533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.22471 -41.71847 -40.11756 -37.19747 -36.59715 -34.53415 -34.09566 -33.09125 -31.69772 -30.98140 -30.29426 -27.99779 -27.51203 -26.96978 -24.94621 -24.13750 -23.32446 -22.47386 -22.28854 -20.60327 -20.20294 -19.55101 -18.79145 -18.71223 -18.03851 -17.43578 -16.76405 -16.58203 -16.27192 -16.01800 -15.55245 -15.47349 -15.13377 -14.94419 -14.78445 -14.65158 -14.33475 -14.21967 -14.18812 -13.88918 -13.67411 -13.49850 -13.30562 -13.10365 -12.96988 -12.81404 -12.66702 -12.56770 -12.31574 -12.08244 -12.02971 -11.94904 -11.90311 -11.59250 -11.41184 -11.30714 -10.94704 -10.83765 -10.79511 -10.72544 -9.77654 -9.11300 -8.85389 -8.17802 -5.60062 1.08098 1.32526 1.41704 1.49421 1.51265 1.85742 2.15391 2.29808 2.42104 3.08618 3.25137 3.34309 3.46874 3.53711 3.64493 3.74329 3.78156 3.86990 4.09570 4.16430 4.18913 4.23698 4.28082 4.32199 4.41006 4.43133 4.54616 4.56741 4.68583 4.70412 4.73100 4.75354 4.84047 4.86252 4.88867 4.91600 4.95851 5.02109 5.09474 5.10479 5.17900 5.23167 5.24823 5.30900 5.34979 5.47359 5.78433 5.82071 6.14352 6.54833 6.60344 6.78423 7.07759 7.15633 7.51404 8.17972 9.02641 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003047 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.378470 B = 9187.141696 C = 9864.833963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C 0.137 3.863 4 N -0.621 5.621 5 C -0.232 4.232 6 H 0.046 0.954 7 C -0.030 4.030 8 N -0.962 5.962 9 Si 0.955 3.045 10 H -0.264 1.264 11 H -0.311 1.311 12 H -0.259 1.259 13 C 0.110 3.890 14 C -0.097 4.097 15 H 0.124 0.876 16 C 0.112 3.888 17 N -0.614 5.614 18 C 0.542 3.458 19 O -0.577 6.577 20 C -0.089 4.089 21 H 0.104 0.896 22 C -0.093 4.093 23 C -0.030 4.030 24 C -0.022 4.022 25 N -0.532 5.532 26 C 0.187 3.813 27 N -0.548 5.548 28 H 0.437 0.563 29 C -0.026 4.026 30 C -0.020 4.020 31 C 0.123 3.877 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.246 0.754 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -21.350 2.577 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C 0.012 3.988 4 N -0.346 5.346 5 C -0.361 4.361 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.608 5.608 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.240 1.240 12 H -0.183 1.183 13 C -0.015 4.015 14 C -0.117 4.117 15 H 0.142 0.858 16 C -0.010 4.010 17 N -0.346 5.346 18 C 0.332 3.668 19 O -0.457 6.457 20 C -0.111 4.111 21 H 0.122 0.878 22 C -0.131 4.131 23 C -0.068 4.068 24 C -0.151 4.151 25 N -0.251 5.251 26 C -0.097 4.097 27 N -0.152 5.152 28 H 0.279 0.721 29 C -0.144 4.144 30 C -0.058 4.058 31 C 0.000 4.000 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.262 0.738 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.337 -21.985 1.850 26.312 hybrid contribution -0.335 1.316 0.975 1.671 sum -14.672 -20.670 2.824 25.505 Atomic orbital electron populations 1.21582 0.90607 1.02418 1.02786 1.22199 0.96987 0.94448 0.94126 1.21621 0.88416 0.94507 0.94301 1.44758 1.15607 1.42588 1.31667 1.18398 0.99680 1.25427 0.92623 0.93629 1.26064 0.96886 0.97532 1.02030 1.69903 1.13800 1.46787 1.30268 0.85757 0.78961 0.77411 0.79562 1.18985 1.23995 1.18329 1.21917 0.97488 0.89918 0.92190 1.22974 0.97561 0.94408 0.96779 0.85828 1.22563 0.97040 0.98718 0.82711 1.49104 1.61996 1.05353 1.18177 1.20522 0.77951 0.83433 0.84849 1.90679 1.45157 1.86402 1.23486 1.21247 0.99599 0.91810 0.98432 0.87755 1.21372 1.00537 0.94713 0.96475 1.19899 0.96484 0.96807 0.93587 1.20760 0.99266 0.92994 1.02066 1.69947 1.24450 1.20993 1.09734 1.25784 0.90188 0.92475 1.01209 1.42882 1.27226 1.16092 1.28954 0.72145 1.20786 0.99815 0.97130 0.96632 1.19839 0.96817 0.89539 0.99646 1.22311 0.99302 0.82117 0.96273 0.91332 0.91761 0.91547 0.93951 0.94817 0.92779 0.95320 0.93359 0.92205 0.87290 0.91363 0.91042 0.90099 0.90253 0.73839 0.88170 0.89863 0.90206 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.60 71.98 0.62 -1.78 16 2 C -0.08 -2.04 1.08 -50.77 -0.05 -2.10 16 3 C 0.14 4.90 6.18 86.47 0.53 5.43 16 4 N -0.62 -27.51 3.02 -695.12 -2.10 -29.62 16 5 C -0.23 -12.90 10.65 84.03 0.90 -12.00 16 6 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 7 C -0.03 -1.72 5.49 84.86 0.47 -1.25 16 8 N -0.96 -59.63 13.97 21.65 0.30 -59.33 16 9 Si 0.96 44.62 24.52 68.60 1.68 46.30 16 10 H -0.26 -11.35 6.87 99.48 0.68 -10.67 16 11 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 12 H -0.26 -11.43 6.43 99.48 0.64 -10.79 16 13 C 0.11 4.01 4.12 86.50 0.36 4.36 16 14 C -0.10 -2.52 3.73 -9.38 -0.03 -2.55 16 15 H 0.12 2.40 7.90 -2.39 -0.02 2.38 16 16 C 0.11 2.73 6.03 86.52 0.52 3.26 16 17 N -0.61 -16.04 3.31 -808.42 -2.68 -18.72 16 18 C 0.54 14.11 6.88 87.66 0.60 14.71 16 19 O -0.58 -19.02 16.69 -3.05 -0.05 -19.07 16 20 C -0.09 -1.75 1.95 -11.36 -0.02 -1.78 16 21 H 0.10 1.91 7.01 -2.39 -0.02 1.90 16 22 C -0.09 -1.90 4.71 30.75 0.14 -1.75 16 23 C -0.03 -0.59 6.30 30.02 0.19 -0.40 16 24 C -0.02 -0.47 6.98 41.61 0.29 -0.18 16 25 N -0.53 -11.90 11.25 -187.89 -2.11 -14.02 16 26 C 0.19 2.56 13.05 180.10 2.35 4.91 16 27 N -0.55 -6.21 6.14 -186.45 -1.15 -7.36 16 28 H 0.44 1.69 8.96 -92.71 -0.83 0.86 16 29 C -0.03 -0.45 7.08 41.14 0.29 -0.16 16 30 C -0.02 -0.30 5.59 29.97 0.17 -0.14 16 31 C 0.12 3.56 6.15 86.51 0.53 4.09 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 1.58 7.59 -2.39 -0.02 1.57 16 36 H 0.03 1.19 7.88 -2.39 -0.02 1.17 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.03 1.07 5.66 -2.38 -0.01 1.05 16 39 H 0.05 1.88 6.57 -2.39 -0.02 1.86 16 40 H 0.06 1.81 7.53 -2.39 -0.02 1.79 16 41 H 0.11 1.88 7.15 -2.39 -0.02 1.86 16 42 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 43 H 0.07 1.52 8.11 -2.38 -0.02 1.51 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.25 1.08 8.06 -2.91 -0.02 1.06 16 47 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 1.37 8.11 -2.38 -0.02 1.35 16 49 H 0.08 2.28 7.63 -2.39 -0.02 2.26 16 50 H 0.05 1.82 7.53 -2.39 -0.02 1.81 16 Total: -1.00 -77.24 382.92 1.78 -75.46 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.03 Total: 13.67 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.85 Total: 12.68 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -7.74 Total: -129.04 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.68 Total: 46.30 kcal Total: -77.24 1.78 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092180521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.073 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds