Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99903 * 2 1 4 4 C 1.39063 * 119.99877 * 179.97438 * 2 1 3 5 5 C 1.39457 * 120.40299 * 354.73289 * 4 2 1 6 6 C 1.38221 * 118.43128 * 180.02562 * 5 4 2 7 7 C 1.39539 * 119.15578 * 0.02562 * 6 5 4 8 8 C 1.47836 * 119.63575 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00044 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00120 * 179.97438 * 8 7 6 11 11 C 1.47197 * 126.70214 * 359.97438 * 10 8 7 12 12 C 1.53735 * 106.42753 * 211.36853 * 11 10 8 13 13 H 1.09004 * 112.72399 * 104.04711 * 12 11 10 14 14 C 1.54879 * 108.86606 * 229.56798 * 12 11 10 15 15 N 1.48338 * 104.11740 * 137.56700 * 14 12 11 16 16 C 1.36929 * 128.20012 * 138.15815 * 15 14 12 17 17 H 1.07994 * 120.00050 * 197.60819 * 16 15 14 18 18 C 1.38813 * 119.99599 * 17.33226 * 16 15 14 19 19 N 1.31613 * 120.00236 * 8.57663 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 188.57515 * 18 16 15 21 21 H 1.48500 * 109.47339 * 94.97906 * 20 18 16 22 22 H 1.48505 * 109.47092 * 214.98016 * 20 18 16 23 23 H 1.48507 * 109.47314 * 334.97688 * 20 18 16 24 24 C 1.48339 * 103.59801 * 317.90130 * 15 14 12 25 25 C 1.54443 * 104.32772 * 42.06844 * 24 15 14 26 26 C 1.52998 * 112.30163 * 96.98609 * 25 24 15 27 27 C 1.48243 * 126.41587 * 180.28773 * 10 8 7 28 28 N 1.32840 * 120.72759 * 0.25440 * 7 6 5 29 29 C 1.31324 * 121.71158 * 359.47597 * 28 7 6 30 30 H 1.09004 * 109.47452 * 181.83540 * 1 2 3 31 31 H 1.08996 * 109.47442 * 301.84551 * 1 2 3 32 32 H 1.09006 * 109.47012 * 61.84424 * 1 2 3 33 33 H 1.08994 * 109.47072 * 269.99534 * 3 2 1 34 34 H 1.08998 * 109.47224 * 29.99884 * 3 2 1 35 35 H 1.09003 * 109.47122 * 149.99687 * 3 2 1 36 36 H 1.07993 * 120.78351 * 0.04313 * 5 4 2 37 37 H 1.07999 * 120.42582 * 180.02562 * 6 5 4 38 38 H 1.09004 * 110.05765 * 92.12896 * 11 10 8 39 39 H 1.08996 * 110.06363 * 330.61584 * 11 10 8 40 40 H 1.09002 * 110.58651 * 18.91528 * 14 12 11 41 41 H 1.08997 * 110.53578 * 256.19869 * 14 12 11 42 42 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.45766 * 160.78127 * 24 15 14 44 44 H 1.08997 * 110.46102 * 283.22238 * 24 15 14 45 45 H 1.08998 * 109.46842 * 61.01062 * 26 25 24 46 46 H 1.08996 * 109.47466 * 181.01589 * 26 25 24 47 47 H 1.09003 * 109.47131 * 301.01419 * 26 25 24 48 48 H 1.08996 * 110.56984 * 29.70824 * 27 10 8 49 49 H 1.09005 * 110.07762 * 267.85638 * 27 10 8 50 50 H 1.07997 * 119.60927 * 180.27280 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2043 0.0005 5 6 1.4759 -2.4143 0.1115 6 6 2.2076 -3.5870 0.1082 7 6 3.5968 -3.5211 -0.0047 8 6 4.3899 -4.7687 -0.0088 9 8 3.8314 -5.8443 0.0854 10 7 5.7322 -4.7136 -0.1180 11 6 6.5557 -3.4998 -0.2413 12 6 7.7771 -3.8875 -1.0906 13 1 7.7120 -3.5191 -2.1145 14 6 9.0612 -3.4082 -0.3695 15 7 10.0067 -4.5408 -0.5232 16 6 11.3427 -4.4943 -0.8197 17 1 11.8473 -5.3792 -1.1782 18 6 12.0470 -3.3082 -0.6648 19 7 11.4785 -2.2771 -0.0768 20 14 13.8020 -3.1756 -1.2910 21 1 13.7983 -2.5828 -2.6526 22 1 14.5898 -2.3104 -0.3766 23 1 14.4131 -4.5281 -1.3417 24 6 9.1635 -5.7354 -0.2733 25 6 7.8463 -5.4370 -1.0224 26 6 7.8068 -6.0845 -2.4080 27 6 6.6612 -5.8686 -0.1433 28 7 4.2150 -2.3494 -0.1030 29 6 3.5506 -1.2166 -0.1082 30 1 -0.3634 -1.0271 0.0329 31 1 -0.3634 0.5422 0.8729 32 1 -0.3633 0.4850 -0.9061 33 1 2.3792 1.5833 -1.0276 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3996 -2.4347 0.1977 37 1 1.7105 -4.5421 0.1919 38 1 6.8772 -3.1645 0.7448 39 1 5.9892 -2.7124 -0.7383 40 1 8.8607 -3.2197 0.6853 41 1 9.4575 -2.5132 -0.8489 42 1 11.9708 -1.4484 0.0317 43 1 9.6386 -6.6286 -0.6788 44 1 8.9785 -5.8547 0.7943 45 1 7.8818 -7.1671 -2.3053 46 1 6.8687 -5.8304 -2.9013 47 1 8.6420 -5.7174 -3.0045 48 1 6.1739 -6.7426 -0.5754 49 1 7.0065 -6.0932 0.8659 50 1 4.0875 -0.2835 -0.1942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092309831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = 64.637869 kcal Electronic energy + Delta-G solvation = -30632.031805 eV Core-core repulsion = 26661.018074 eV Total energy + Delta-G solvation = -3971.013731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.81674 -39.71725 -38.17276 -36.92845 -34.83471 -32.82005 -32.33098 -30.97142 -30.56896 -29.65533 -28.86434 -26.90329 -26.01422 -25.09907 -24.90496 -23.47376 -22.61891 -21.64099 -20.39021 -19.74455 -18.46145 -17.65179 -17.27549 -16.58307 -16.35743 -15.76199 -15.63569 -15.32289 -14.86412 -14.69277 -14.53825 -14.13384 -14.00963 -13.87928 -13.61854 -13.29583 -13.09055 -13.02492 -12.95459 -12.64129 -12.51058 -12.23241 -12.00900 -11.92429 -11.52493 -11.45750 -11.23746 -10.88658 -10.80238 -10.72528 -10.54317 -10.28409 -10.04666 -9.89824 -9.77634 -9.76050 -9.64870 -9.59037 -9.10636 -8.61755 -8.27229 -7.73794 -6.78006 -5.74918 -3.09691 0.78581 1.13108 2.59538 2.91204 3.26789 3.40528 3.46286 3.47886 3.92592 4.24121 4.35795 4.50119 4.50639 4.64826 4.78667 4.85901 4.89755 5.03003 5.11605 5.12390 5.18360 5.23930 5.28876 5.35473 5.52108 5.56180 5.67599 5.73733 5.82785 5.85517 5.89144 5.96610 6.06635 6.17594 6.21353 6.26833 6.44369 6.54206 6.59221 6.63264 6.64920 6.65697 6.82452 6.87072 6.94063 7.03583 7.40284 7.60235 7.73906 7.76669 7.92536 8.26099 8.43222 9.15263 9.78319 10.58684 11.39019 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002735 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.459805 B =10236.671148 C =11859.119666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.625 5.625 3 C 0.087 3.913 4 C 0.185 3.815 5 C -0.173 4.173 6 C -0.058 4.058 7 C 0.020 3.980 8 C 0.587 3.413 9 O -0.556 6.556 10 N -0.594 5.594 11 C 0.104 3.896 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.165 3.835 15 N -0.594 5.594 16 C -0.222 4.222 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.136 3.864 25 C -0.088 4.088 26 C -0.119 4.119 27 C 0.117 3.883 28 N -0.404 5.404 29 C 0.027 3.973 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.025 0.975 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.054 5.672 -0.469 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C -0.055 4.055 4 C 0.078 3.922 5 C -0.203 4.203 6 C -0.079 4.079 7 C -0.119 4.119 8 C 0.375 3.625 9 O -0.436 6.436 10 N -0.324 5.324 11 C -0.018 4.018 12 C -0.139 4.139 13 H 0.098 0.902 14 C 0.039 3.961 15 N -0.316 5.316 16 C -0.351 4.351 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.560 5.560 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.091 4.091 26 C -0.176 4.176 27 C -0.005 4.005 28 N -0.114 5.114 29 C -0.140 4.140 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.365 5.410 -0.455 23.015 hybrid contribution -0.034 0.341 -0.128 0.366 sum -22.399 5.751 -0.582 23.133 Atomic orbital electron populations 1.21784 0.79148 1.03334 1.01498 1.46234 1.05377 1.03188 1.78703 1.21750 0.97449 0.84457 1.01880 1.19134 0.93045 0.86621 0.93354 1.21086 1.00459 0.90568 1.08202 1.21823 0.93353 0.99213 0.93532 1.20796 0.91651 0.91778 1.07694 1.17377 0.80621 0.87382 0.77080 1.90746 1.70490 1.29475 1.52844 1.48697 1.04542 1.09838 1.69372 1.22679 0.91103 0.87454 1.00598 1.23371 0.96732 0.94210 0.99636 0.90199 1.21801 0.85083 0.93141 0.96079 1.45064 1.04952 1.00334 1.81294 1.18981 0.82794 0.96947 1.36340 0.90758 1.24905 0.98027 0.97184 1.00162 1.69893 1.36692 1.03296 1.46151 0.86135 0.84234 0.77488 0.78100 1.21629 1.21766 1.20555 1.21867 0.89542 0.91978 0.95662 1.22360 0.95280 0.95994 0.95448 1.21578 1.01239 0.99375 0.95435 1.22404 0.89163 0.89008 0.99930 1.67676 1.38944 0.97676 1.07081 1.22528 0.89108 0.97045 1.05271 0.90267 0.92266 0.92383 0.92665 0.91081 0.90695 0.84283 0.83647 0.91472 0.87590 0.95743 0.89586 0.93689 0.93329 0.95606 0.93168 0.93578 0.91804 0.90721 0.91228 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.63 59.85 0.64 1.03 16 2 N -0.63 -4.42 3.39 -187.39 -0.64 -5.06 16 3 C 0.09 0.45 10.11 59.85 0.61 1.05 16 4 C 0.18 1.78 6.56 -83.67 -0.55 1.23 16 5 C -0.17 -1.66 9.38 -39.13 -0.37 -2.03 16 6 C -0.06 -0.70 9.62 -39.10 -0.38 -1.08 16 7 C 0.02 0.30 6.72 -83.02 -0.56 -0.26 16 8 C 0.59 10.27 7.86 -12.33 -0.10 10.18 16 9 O -0.56 -10.79 16.55 5.31 0.09 -10.70 16 10 N -0.59 -10.37 3.34 -171.91 -0.57 -10.95 16 11 C 0.10 1.81 5.83 -3.28 -0.02 1.79 16 12 C -0.12 -2.26 3.76 -88.06 -0.33 -2.59 16 13 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 14 C 0.17 3.88 5.48 -2.04 -0.01 3.86 16 15 N -0.59 -14.96 3.36 -168.21 -0.57 -15.53 16 16 C -0.22 -6.12 10.37 -15.06 -0.16 -6.28 16 17 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 19 N -0.91 -26.47 10.93 55.49 0.61 -25.86 16 20 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.14 2.85 6.36 -2.27 -0.01 2.84 16 25 C -0.09 -1.60 1.07 -152.18 -0.16 -1.76 16 26 C -0.12 -1.96 8.57 37.16 0.32 -1.64 16 27 C 0.12 2.02 6.28 -2.70 -0.02 2.00 16 28 N -0.40 -5.69 6.55 -9.63 -0.06 -5.76 16 29 C 0.03 0.30 10.33 -17.31 -0.18 0.12 16 30 H 0.08 0.33 5.35 -51.93 -0.28 0.05 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 36 H 0.14 0.93 5.85 -52.49 -0.31 0.62 16 37 H 0.15 1.66 7.63 -52.49 -0.40 1.26 16 38 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 39 H 0.11 1.75 5.44 -51.93 -0.28 1.47 16 40 H 0.02 0.61 7.18 -51.93 -0.37 0.23 16 41 H 0.09 2.26 6.53 -51.93 -0.34 1.92 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 44 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 1.25 7.64 -51.93 -0.40 0.86 16 49 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 50 H 0.16 1.44 6.29 -52.49 -0.33 1.11 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -33.10 388.02 -9.17 -42.27 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.48 Total: 0.68 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.37 Total: 8.21 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -1.23 Total: -63.15 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.10 -9.17 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092309831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.912 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds