Wall clock time and date at job start Wed Apr 1 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99903 * 2 1 4 4 C 1.39063 * 119.99877 * 179.97438 * 2 1 3 5 5 C 1.39457 * 120.40299 * 354.73289 * 4 2 1 6 6 C 1.38221 * 118.43128 * 180.02562 * 5 4 2 7 7 C 1.39539 * 119.15578 * 0.02562 * 6 5 4 8 8 C 1.47836 * 119.63575 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00044 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00120 * 179.97438 * 8 7 6 11 11 C 1.47197 * 126.70214 * 359.97438 * 10 8 7 12 12 C 1.53735 * 106.42753 * 211.36853 * 11 10 8 13 13 H 1.09004 * 112.72399 * 104.04711 * 12 11 10 14 14 C 1.54879 * 108.86606 * 229.56798 * 12 11 10 15 15 N 1.48338 * 104.11740 * 137.56700 * 14 12 11 16 16 C 1.36929 * 128.20012 * 138.15815 * 15 14 12 17 17 H 1.07994 * 120.00050 * 197.60819 * 16 15 14 18 18 C 1.38813 * 119.99599 * 17.33226 * 16 15 14 19 19 N 1.31613 * 120.00236 * 8.57663 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 188.57515 * 18 16 15 21 21 H 1.48500 * 109.47339 * 94.97906 * 20 18 16 22 22 H 1.48505 * 109.47092 * 214.98016 * 20 18 16 23 23 H 1.48507 * 109.47314 * 334.97688 * 20 18 16 24 24 C 1.48339 * 103.59801 * 317.90130 * 15 14 12 25 25 C 1.54443 * 104.32772 * 42.06844 * 24 15 14 26 26 C 1.52998 * 112.30163 * 96.98609 * 25 24 15 27 27 C 1.48243 * 126.41587 * 180.28773 * 10 8 7 28 28 N 1.32840 * 120.72759 * 0.25440 * 7 6 5 29 29 C 1.31324 * 121.71158 * 359.47597 * 28 7 6 30 30 H 1.09004 * 109.47452 * 181.83540 * 1 2 3 31 31 H 1.08996 * 109.47442 * 301.84551 * 1 2 3 32 32 H 1.09006 * 109.47012 * 61.84424 * 1 2 3 33 33 H 1.08994 * 109.47072 * 269.99534 * 3 2 1 34 34 H 1.08998 * 109.47224 * 29.99884 * 3 2 1 35 35 H 1.09003 * 109.47122 * 149.99687 * 3 2 1 36 36 H 1.07993 * 120.78351 * 0.04313 * 5 4 2 37 37 H 1.07999 * 120.42582 * 180.02562 * 6 5 4 38 38 H 1.09004 * 110.05765 * 92.12896 * 11 10 8 39 39 H 1.08996 * 110.06363 * 330.61584 * 11 10 8 40 40 H 1.09002 * 110.58651 * 18.91528 * 14 12 11 41 41 H 1.08997 * 110.53578 * 256.19869 * 14 12 11 42 42 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.45766 * 160.78127 * 24 15 14 44 44 H 1.08997 * 110.46102 * 283.22238 * 24 15 14 45 45 H 1.08998 * 109.46842 * 61.01062 * 26 25 24 46 46 H 1.08996 * 109.47466 * 181.01589 * 26 25 24 47 47 H 1.09003 * 109.47131 * 301.01419 * 26 25 24 48 48 H 1.08996 * 110.56984 * 29.70824 * 27 10 8 49 49 H 1.09005 * 110.07762 * 267.85638 * 27 10 8 50 50 H 1.07997 * 119.60927 * 180.27280 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2043 0.0005 5 6 1.4759 -2.4143 0.1115 6 6 2.2076 -3.5870 0.1082 7 6 3.5968 -3.5211 -0.0047 8 6 4.3899 -4.7687 -0.0088 9 8 3.8314 -5.8443 0.0854 10 7 5.7322 -4.7136 -0.1180 11 6 6.5557 -3.4998 -0.2413 12 6 7.7771 -3.8875 -1.0906 13 1 7.7120 -3.5191 -2.1145 14 6 9.0612 -3.4082 -0.3695 15 7 10.0067 -4.5408 -0.5232 16 6 11.3427 -4.4943 -0.8197 17 1 11.8473 -5.3792 -1.1782 18 6 12.0470 -3.3082 -0.6648 19 7 11.4785 -2.2771 -0.0768 20 14 13.8020 -3.1756 -1.2910 21 1 13.7983 -2.5828 -2.6526 22 1 14.5898 -2.3104 -0.3766 23 1 14.4131 -4.5281 -1.3417 24 6 9.1635 -5.7354 -0.2733 25 6 7.8463 -5.4370 -1.0224 26 6 7.8068 -6.0845 -2.4080 27 6 6.6612 -5.8686 -0.1433 28 7 4.2150 -2.3494 -0.1030 29 6 3.5506 -1.2166 -0.1082 30 1 -0.3634 -1.0271 0.0329 31 1 -0.3634 0.5422 0.8729 32 1 -0.3633 0.4850 -0.9061 33 1 2.3792 1.5833 -1.0276 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3996 -2.4347 0.1977 37 1 1.7105 -4.5421 0.1919 38 1 6.8772 -3.1645 0.7448 39 1 5.9892 -2.7124 -0.7383 40 1 8.8607 -3.2197 0.6853 41 1 9.4575 -2.5132 -0.8489 42 1 11.9708 -1.4484 0.0317 43 1 9.6386 -6.6286 -0.6788 44 1 8.9785 -5.8547 0.7943 45 1 7.8818 -7.1671 -2.3053 46 1 6.8687 -5.8304 -2.9013 47 1 8.6420 -5.7174 -3.0045 48 1 6.1739 -6.7426 -0.5754 49 1 7.0065 -6.0932 0.8659 50 1 4.0875 -0.2835 -0.1942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092309831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:47 Heat of formation + Delta-G solvation = 44.773023 kcal Electronic energy + Delta-G solvation = -30632.893210 eV Core-core repulsion = 26661.018074 eV Total energy + Delta-G solvation = -3971.875135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87605 -40.98991 -39.51514 -37.69922 -36.51540 -34.42790 -33.32535 -32.56088 -31.65334 -31.28500 -29.31709 -28.14482 -27.66481 -26.59343 -26.16782 -24.38211 -23.94970 -22.66316 -22.16877 -20.93607 -19.99142 -18.69667 -18.39413 -18.23041 -17.33838 -17.06591 -16.70067 -16.63032 -16.12794 -15.85713 -15.71992 -15.44787 -15.21734 -15.14268 -14.96738 -14.45279 -14.31539 -14.15806 -13.97648 -13.54981 -13.46156 -13.35647 -13.19119 -13.09232 -12.99757 -12.97035 -12.70281 -12.54164 -12.49275 -12.21576 -11.88469 -11.76672 -11.57784 -11.49615 -11.44272 -11.33866 -11.11935 -10.68701 -10.62136 -10.23296 -9.66035 -8.82024 -8.42566 -7.85970 -5.22924 -0.15753 0.31180 1.48948 1.49998 1.59154 1.76064 1.94991 2.07267 2.51866 2.93046 3.20723 3.33595 3.53295 3.55442 3.71930 3.75693 3.92229 3.98638 4.02308 4.13423 4.23590 4.31302 4.33488 4.43813 4.48287 4.54684 4.60118 4.67081 4.70183 4.78027 4.79140 4.84117 4.90880 4.94799 4.97381 5.02138 5.05061 5.06727 5.15131 5.19720 5.25903 5.33877 5.43417 5.49431 5.54557 5.62081 5.74006 6.09295 6.21883 6.23345 6.54263 6.80036 7.05612 7.16891 7.72327 8.54328 9.27341 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002735 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.459805 B =10236.671148 C =11859.119666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.079 3.921 4 C 0.198 3.802 5 C -0.171 4.171 6 C -0.055 4.055 7 C -0.020 4.020 8 C 0.585 3.415 9 O -0.582 6.582 10 N -0.599 5.599 11 C 0.121 3.879 12 C -0.108 4.108 13 H 0.083 0.917 14 C 0.175 3.825 15 N -0.616 5.616 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.061 4.061 19 N -0.944 5.944 20 Si 0.976 3.024 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.135 3.865 25 C -0.078 4.078 26 C -0.112 4.112 27 C 0.121 3.879 28 N -0.426 5.426 29 C 0.016 3.984 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.172 0.828 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.117 0.883 40 H 0.004 0.996 41 H 0.053 0.947 42 H 0.249 0.751 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.300 6.403 -1.180 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.326 5.326 3 C -0.064 4.064 4 C 0.088 3.912 5 C -0.201 4.201 6 C -0.077 4.077 7 C -0.157 4.157 8 C 0.375 3.625 9 O -0.464 6.464 10 N -0.329 5.329 11 C -0.002 4.002 12 C -0.129 4.129 13 H 0.101 0.899 14 C 0.049 3.951 15 N -0.340 5.340 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.255 4.255 19 N -0.592 5.592 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.193 1.193 24 C 0.010 3.990 25 C -0.080 4.080 26 C -0.169 4.169 27 C -0.002 4.002 28 N -0.136 5.136 29 C -0.152 4.152 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -24.656 6.141 -1.170 25.436 hybrid contribution 0.513 0.278 0.143 0.600 sum -24.143 6.419 -1.027 25.003 Atomic orbital electron populations 1.22039 0.77325 1.04273 1.02914 1.46595 1.06665 1.02856 1.76485 1.21956 0.97727 0.84014 1.02656 1.19207 0.92669 0.87810 0.91490 1.21360 1.01858 0.89493 1.07345 1.21886 0.92374 1.00365 0.93063 1.20485 0.92378 0.90959 1.11919 1.17850 0.80376 0.88232 0.76008 1.90707 1.70807 1.30721 1.54121 1.48707 1.04847 1.09488 1.69884 1.22444 0.90385 0.87839 0.99549 1.23187 0.95240 0.95054 0.99392 0.89904 1.21570 0.86643 0.91947 0.94946 1.45337 1.04969 1.02155 1.81524 1.19329 0.84047 0.97123 1.35812 0.90410 1.25707 1.01928 0.96989 1.00845 1.70079 1.38013 1.03573 1.47542 0.85099 0.79601 0.77666 0.77173 1.21367 1.22204 1.19321 1.21997 0.90235 0.90897 0.95919 1.22255 0.94162 0.95189 0.96409 1.21519 1.01177 1.00409 0.93807 1.22327 0.88842 0.89421 0.99589 1.67460 1.40068 0.98226 1.07848 1.22826 0.90227 0.96696 1.05435 0.89627 0.90679 0.91068 0.91962 0.88971 0.90909 0.81076 0.83472 0.92805 0.86498 0.97831 0.92808 0.94203 0.92486 0.95918 0.91191 0.92520 0.93170 0.89837 0.91518 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 10.63 127.77 1.36 1.76 16 2 N -0.62 -6.70 3.39 -746.79 -2.53 -9.24 16 3 C 0.08 0.57 10.11 127.77 1.29 1.86 16 4 C 0.20 3.34 6.56 38.58 0.25 3.60 16 5 C -0.17 -2.86 9.38 22.56 0.21 -2.65 16 6 C -0.06 -1.29 9.62 22.58 0.22 -1.07 16 7 C -0.02 -0.58 6.72 41.85 0.28 -0.30 16 8 C 0.58 20.65 7.86 86.78 0.68 21.33 16 9 O -0.58 -22.74 16.55 -3.92 -0.06 -22.80 16 10 N -0.60 -21.10 3.34 -816.08 -2.73 -23.82 16 11 C 0.12 4.27 5.83 86.49 0.50 4.78 16 12 C -0.11 -4.20 3.76 -9.13 -0.03 -4.23 16 13 H 0.08 3.19 7.93 -2.38 -0.02 3.17 16 14 C 0.18 8.57 5.48 86.67 0.47 9.05 16 15 N -0.62 -31.85 3.36 -686.09 -2.31 -34.16 16 16 C -0.23 -13.11 10.37 84.04 0.87 -12.24 16 17 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 18 C -0.06 -3.44 5.40 84.86 0.46 -2.99 16 19 N -0.94 -56.45 10.93 21.65 0.24 -56.22 16 20 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C 0.14 5.71 6.36 86.52 0.55 6.26 16 25 C -0.08 -2.81 1.07 -50.67 -0.05 -2.86 16 26 C -0.11 -3.55 8.57 71.98 0.62 -2.94 16 27 C 0.12 4.13 6.28 86.29 0.54 4.67 16 28 N -0.43 -11.92 6.55 -184.38 -1.21 -13.13 16 29 C 0.02 0.33 10.33 85.06 0.88 1.21 16 30 H 0.09 0.36 5.35 -2.39 -0.01 0.34 16 31 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.09 0.32 8.07 -2.39 -0.02 0.30 16 35 H 0.07 0.59 6.44 -2.39 -0.02 0.58 16 36 H 0.17 1.65 5.85 -2.91 -0.02 1.64 16 37 H 0.15 3.27 7.63 -2.91 -0.02 3.25 16 38 H 0.05 2.05 7.10 -2.38 -0.02 2.03 16 39 H 0.12 3.93 5.44 -2.39 -0.01 3.92 16 40 H 0.00 0.20 7.18 -2.39 -0.02 0.18 16 41 H 0.05 2.96 6.53 -2.39 -0.02 2.95 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 43 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 44 H 0.02 0.98 7.18 -2.39 -0.02 0.97 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 2.73 7.64 -2.39 -0.02 2.71 16 49 H 0.07 2.31 7.11 -2.38 -0.02 2.29 16 50 H 0.18 2.94 6.29 -2.91 -0.02 2.92 16 Total: -1.00 -73.38 388.02 3.48 -69.89 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.62 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 9.10 Total: 25.25 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -8.54 Total: -136.56 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.38 3.48 -69.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092309831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.668 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds