Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00284 * 2 1 4 4 C 1.39195 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.39414 * 120.83282 * 359.97438 * 4 2 1 6 6 C 1.38234 * 119.26454 * 180.02562 * 5 4 2 7 7 N 1.31648 * 120.99478 * 0.02562 * 6 5 4 8 8 C 1.32825 * 121.82429 * 0.02562 * 7 6 5 9 9 C 1.48190 * 119.68731 * 179.97438 * 8 7 6 10 10 O 1.21517 * 119.99853 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00072 * 359.97438 * 9 8 7 12 12 C 1.47198 * 126.70170 * 359.97438 * 11 9 8 13 13 C 1.53750 * 106.42649 * 211.37213 * 12 11 9 14 14 H 1.08999 * 112.72116 * 104.04672 * 13 12 11 15 15 C 1.54873 * 108.86153 * 229.56717 * 13 12 11 16 16 N 1.48335 * 104.11785 * 137.56379 * 15 13 12 17 17 C 1.36930 * 128.20021 * 138.15730 * 16 15 13 18 18 H 1.08009 * 119.99740 * 343.87829 * 17 16 15 19 19 C 1.38808 * 120.00282 * 163.61314 * 17 16 15 20 20 N 1.31618 * 119.99877 * 351.16848 * 19 17 16 21 21 Si 1.86800 * 120.00231 * 171.17413 * 19 17 16 22 22 H 1.48509 * 109.46959 * 89.99621 * 21 19 17 23 23 H 1.48500 * 109.46971 * 209.99300 * 21 19 17 24 24 H 1.48492 * 109.47156 * 329.99828 * 21 19 17 25 25 C 1.48340 * 103.60009 * 317.89708 * 16 15 13 26 26 C 1.54453 * 104.32393 * 42.06545 * 25 16 15 27 27 C 1.52994 * 112.29782 * 96.98956 * 26 25 16 28 28 C 1.48245 * 126.41897 * 180.28327 * 11 9 8 29 29 C 1.39030 * 120.62529 * 0.25229 * 8 7 6 30 30 H 1.09008 * 109.47137 * 239.99942 * 1 2 3 31 31 H 1.08991 * 109.47012 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47382 * 120.00155 * 1 2 3 33 33 H 1.08998 * 109.47148 * 270.00214 * 3 2 1 34 34 H 1.09003 * 109.46853 * 29.99955 * 3 2 1 35 35 H 1.08996 * 109.47361 * 149.99745 * 3 2 1 36 36 H 1.08005 * 120.36890 * 359.97438 * 5 4 2 37 37 H 1.08005 * 119.50302 * 179.97438 * 6 5 4 38 38 H 1.08996 * 110.06885 * 92.12978 * 12 11 9 39 39 H 1.09002 * 110.06429 * 330.61001 * 12 11 9 40 40 H 1.09000 * 110.59285 * 18.90729 * 15 13 12 41 41 H 1.09003 * 110.53248 * 256.19067 * 15 13 12 42 42 H 0.96996 * 120.00435 * 180.02562 * 20 19 17 43 43 H 1.08990 * 110.45800 * 160.77904 * 25 16 15 44 44 H 1.09000 * 110.45654 * 283.22909 * 25 16 15 45 45 H 1.08997 * 109.47500 * 61.00927 * 27 26 25 46 46 H 1.09002 * 109.47104 * 181.01728 * 27 26 25 47 47 H 1.09002 * 109.47089 * 301.01228 * 27 26 25 48 48 H 1.09003 * 110.56467 * 29.70669 * 28 11 9 49 49 H 1.08996 * 110.07917 * 267.85608 * 28 11 9 50 50 H 1.07999 * 120.52625 * 179.74851 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1610 -1.2055 -0.0005 5 6 1.4815 -2.4228 -0.0005 6 6 2.2051 -3.6006 -0.0006 7 7 3.5215 -3.5875 0.0000 8 6 4.2107 -2.4520 0.0010 9 6 5.6920 -2.4925 0.0021 10 8 6.3281 -1.4571 0.0026 11 7 6.3337 -3.6776 0.0026 12 6 5.7149 -5.0131 0.0026 13 6 6.6742 -5.9369 0.7709 14 1 6.3241 -6.1638 1.7779 15 6 6.9224 -7.2128 -0.0711 16 7 8.3797 -7.4560 0.0614 17 6 9.0255 -8.6487 0.2493 18 1 8.4720 -9.5170 0.5755 19 6 10.3904 -8.7434 0.0152 20 7 11.0320 -7.7431 -0.5504 21 14 11.3166 -10.2906 0.5029 22 1 11.3074 -11.2508 -0.6300 23 1 12.7190 -9.9411 0.8441 24 1 10.6598 -10.9098 1.6820 25 6 8.9721 -6.1019 -0.0642 26 6 8.0394 -5.1976 0.7712 27 6 8.5742 -4.9603 2.1848 28 6 7.8018 -3.8835 0.0096 29 6 3.5553 -1.2258 0.0069 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 2.3792 1.5833 -1.0276 34 1 1.6085 2.0283 0.5138 35 1 3.1499 1.1383 0.5138 36 1 0.4017 -2.4455 0.0003 37 1 1.6827 -4.5459 -0.0001 38 1 5.5925 -5.3687 -1.0204 39 1 4.7480 -4.9773 0.5047 40 1 6.6581 -7.0409 -1.1145 41 1 6.3576 -8.0531 0.3326 42 1 11.9857 -7.8093 -0.7144 43 1 9.9823 -6.0886 0.3448 44 1 8.9799 -5.7847 -1.1070 45 1 9.5418 -4.4616 2.1283 46 1 7.8742 -4.3339 2.7377 47 1 8.6877 -5.9165 2.6956 48 1 8.3015 -3.0600 0.5198 49 1 8.1723 -3.9710 -1.0117 50 1 4.1172 -0.3035 0.0118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092314362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = 61.302025 kcal Electronic energy + Delta-G solvation = -30596.774472 eV Core-core repulsion = 26625.616088 eV Total energy + Delta-G solvation = -3971.158384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81952 -39.69265 -38.13573 -37.15349 -34.85020 -32.55401 -31.67739 -31.47606 -31.07017 -29.40154 -28.77766 -26.60120 -25.92897 -25.66243 -24.91299 -23.59710 -22.50662 -21.78543 -20.42150 -19.52165 -18.36090 -17.52804 -17.21396 -16.62373 -16.09475 -15.71913 -15.63761 -15.34429 -15.22546 -14.63715 -14.55462 -14.28556 -14.15754 -13.91292 -13.52697 -13.38203 -13.12653 -13.03602 -12.79498 -12.67328 -12.57975 -12.26230 -12.02989 -11.70093 -11.52965 -11.44494 -11.27172 -10.89346 -10.82195 -10.69273 -10.66849 -10.27341 -10.01246 -9.87517 -9.86428 -9.68719 -9.49014 -9.34123 -9.12489 -8.62239 -8.27839 -8.03659 -6.79367 -5.74193 -3.08518 0.64972 1.26092 2.56172 2.88192 3.19156 3.40904 3.46625 3.48379 3.89352 4.16646 4.43701 4.47054 4.50949 4.73170 4.79584 4.85620 5.00477 5.03597 5.12239 5.14808 5.18738 5.23478 5.30165 5.38708 5.45151 5.60814 5.63584 5.72545 5.75342 5.78823 5.82662 6.04747 6.10683 6.14468 6.26707 6.34978 6.43276 6.49864 6.58788 6.65733 6.68778 6.77588 6.80570 6.89214 6.92237 7.08897 7.35895 7.59766 7.74326 7.77265 7.86741 8.26389 8.34724 9.15329 9.78866 10.58302 11.39578 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.002322 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.266059 B =12057.655122 C =12689.559270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.628 5.628 3 C 0.087 3.913 4 C 0.242 3.758 5 C -0.235 4.235 6 C 0.137 3.863 7 N -0.491 5.491 8 C 0.130 3.870 9 C 0.579 3.421 10 O -0.547 6.547 11 N -0.590 5.590 12 C 0.103 3.897 13 C -0.110 4.110 14 H 0.082 0.918 15 C 0.132 3.868 16 N -0.594 5.594 17 C -0.222 4.222 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.168 3.832 26 C -0.097 4.097 27 C -0.116 4.116 28 C 0.116 3.884 29 C -0.189 4.189 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.253 0.747 43 H 0.091 0.909 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 15.644 2.113 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.339 5.339 3 C -0.056 4.056 4 C 0.131 3.869 5 C -0.260 4.260 6 C -0.022 4.022 7 N -0.206 5.206 8 C -0.007 4.007 9 C 0.366 3.634 10 O -0.426 6.426 11 N -0.320 5.320 12 C -0.020 4.020 13 C -0.131 4.131 14 H 0.100 0.900 15 C 0.005 3.995 16 N -0.317 5.317 17 C -0.350 4.350 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.041 3.959 26 C -0.099 4.099 27 C -0.174 4.174 28 C -0.006 4.006 29 C -0.215 4.215 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.355 15.532 2.083 26.488 hybrid contribution -0.081 0.039 0.070 0.114 sum -21.435 15.570 2.153 26.581 Atomic orbital electron populations 1.21673 0.78862 1.02841 1.01534 1.46282 1.05364 1.03132 1.79134 1.21786 0.97641 0.84364 1.01792 1.17934 0.90920 0.86390 0.91654 1.21757 1.01156 0.91829 1.11271 1.22609 0.89390 0.97662 0.92499 1.67880 1.08712 1.28457 1.15564 1.20869 0.93956 0.88954 0.96949 1.17521 0.85549 0.82708 0.77648 1.90752 1.67111 1.32500 1.52217 1.48723 1.08214 1.05834 1.69207 1.22693 0.98277 0.80077 1.00966 1.23204 0.94049 0.96412 0.99452 0.89975 1.21950 0.87926 0.93897 0.95709 1.45075 0.99773 1.02855 1.84004 1.18965 0.91026 0.87213 1.37842 0.90697 1.24886 0.97354 0.97939 1.00177 1.69878 1.08646 1.31302 1.46305 0.86160 0.79237 0.82417 0.78168 1.21575 1.21646 1.20631 1.21761 0.96784 0.82589 0.94725 1.22537 0.97120 0.93748 0.96521 1.21545 0.99607 1.01347 0.94861 1.22494 0.79293 0.97918 1.00845 1.21556 0.92333 0.99725 1.07911 0.92439 0.90529 0.92416 0.92818 0.91109 0.90756 0.84837 0.82166 0.91577 0.87182 0.95514 0.93394 0.93641 0.89113 0.95917 0.92934 0.94094 0.91897 0.90651 0.90881 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 9.43 59.85 0.56 0.99 16 2 N -0.63 -4.77 3.40 -187.37 -0.64 -5.41 16 3 C 0.09 0.53 10.19 59.84 0.61 1.14 16 4 C 0.24 2.43 6.57 -83.63 -0.55 1.88 16 5 C -0.23 -2.07 9.39 -39.14 -0.37 -2.44 16 6 C 0.14 1.35 11.17 -17.63 -0.20 1.16 16 7 N -0.49 -6.46 6.57 -9.89 -0.07 -6.52 16 8 C 0.13 1.89 6.72 -83.06 -0.56 1.33 16 9 C 0.58 10.02 7.87 -12.17 -0.10 9.92 16 10 O -0.55 -10.64 16.56 5.35 0.09 -10.55 16 11 N -0.59 -10.17 3.34 -171.78 -0.57 -10.74 16 12 C 0.10 1.64 5.84 -3.27 -0.02 1.63 16 13 C -0.11 -1.96 3.76 -88.05 -0.33 -2.30 16 14 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 15 C 0.13 2.70 6.77 -2.04 -0.01 2.69 16 16 N -0.59 -14.93 3.37 -168.21 -0.57 -15.50 16 17 C -0.22 -6.10 10.37 -15.06 -0.16 -6.26 16 18 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 19 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 20 N -0.91 -26.67 10.87 55.49 0.60 -26.07 16 21 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.17 3.96 5.10 -2.27 -0.01 3.95 16 26 C -0.10 -1.84 1.07 -152.18 -0.16 -2.01 16 27 C -0.12 -2.09 8.57 37.15 0.32 -1.77 16 28 C 0.12 2.11 6.28 -2.70 -0.02 2.09 16 29 C -0.19 -2.36 8.79 -38.84 -0.34 -2.70 16 30 H 0.06 0.24 7.99 -51.92 -0.41 -0.18 16 31 H 0.08 0.22 7.79 -51.93 -0.40 -0.19 16 32 H 0.06 0.24 7.99 -51.93 -0.41 -0.17 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 35 H 0.07 0.51 6.25 -51.93 -0.32 0.19 16 36 H 0.13 0.81 6.88 -52.48 -0.36 0.45 16 37 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.07 1.08 7.10 -51.93 -0.37 0.71 16 39 H 0.11 1.64 5.44 -51.93 -0.28 1.36 16 40 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 2.40 6.23 -51.93 -0.32 2.08 16 44 H 0.02 0.57 7.18 -51.93 -0.37 0.20 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 49 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 50 H 0.14 1.78 5.85 -52.49 -0.31 1.47 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -33.09 389.70 -9.34 -42.43 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.62 Total: 0.57 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.42 Total: 9.03 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.24 Total: -64.23 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.09 -9.34 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092314362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.734 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds