Wall clock time and date at job start Wed Apr 1 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00284 * 2 1 4 4 C 1.39195 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.39414 * 120.83282 * 359.97438 * 4 2 1 6 6 C 1.38234 * 119.26454 * 180.02562 * 5 4 2 7 7 N 1.31648 * 120.99478 * 0.02562 * 6 5 4 8 8 C 1.32825 * 121.82429 * 0.02562 * 7 6 5 9 9 C 1.48190 * 119.68731 * 179.97438 * 8 7 6 10 10 O 1.21517 * 119.99853 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00072 * 359.97438 * 9 8 7 12 12 C 1.47198 * 126.70170 * 359.97438 * 11 9 8 13 13 C 1.53750 * 106.42649 * 211.37213 * 12 11 9 14 14 H 1.08999 * 112.72116 * 104.04672 * 13 12 11 15 15 C 1.54873 * 108.86153 * 229.56717 * 13 12 11 16 16 N 1.48335 * 104.11785 * 137.56379 * 15 13 12 17 17 C 1.36930 * 128.20021 * 138.15730 * 16 15 13 18 18 H 1.08009 * 119.99740 * 343.87829 * 17 16 15 19 19 C 1.38808 * 120.00282 * 163.61314 * 17 16 15 20 20 N 1.31618 * 119.99877 * 351.16848 * 19 17 16 21 21 Si 1.86800 * 120.00231 * 171.17413 * 19 17 16 22 22 H 1.48509 * 109.46959 * 89.99621 * 21 19 17 23 23 H 1.48500 * 109.46971 * 209.99300 * 21 19 17 24 24 H 1.48492 * 109.47156 * 329.99828 * 21 19 17 25 25 C 1.48340 * 103.60009 * 317.89708 * 16 15 13 26 26 C 1.54453 * 104.32393 * 42.06545 * 25 16 15 27 27 C 1.52994 * 112.29782 * 96.98956 * 26 25 16 28 28 C 1.48245 * 126.41897 * 180.28327 * 11 9 8 29 29 C 1.39030 * 120.62529 * 0.25229 * 8 7 6 30 30 H 1.09008 * 109.47137 * 239.99942 * 1 2 3 31 31 H 1.08991 * 109.47012 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47382 * 120.00155 * 1 2 3 33 33 H 1.08998 * 109.47148 * 270.00214 * 3 2 1 34 34 H 1.09003 * 109.46853 * 29.99955 * 3 2 1 35 35 H 1.08996 * 109.47361 * 149.99745 * 3 2 1 36 36 H 1.08005 * 120.36890 * 359.97438 * 5 4 2 37 37 H 1.08005 * 119.50302 * 179.97438 * 6 5 4 38 38 H 1.08996 * 110.06885 * 92.12978 * 12 11 9 39 39 H 1.09002 * 110.06429 * 330.61001 * 12 11 9 40 40 H 1.09000 * 110.59285 * 18.90729 * 15 13 12 41 41 H 1.09003 * 110.53248 * 256.19067 * 15 13 12 42 42 H 0.96996 * 120.00435 * 180.02562 * 20 19 17 43 43 H 1.08990 * 110.45800 * 160.77904 * 25 16 15 44 44 H 1.09000 * 110.45654 * 283.22909 * 25 16 15 45 45 H 1.08997 * 109.47500 * 61.00927 * 27 26 25 46 46 H 1.09002 * 109.47104 * 181.01728 * 27 26 25 47 47 H 1.09002 * 109.47089 * 301.01228 * 27 26 25 48 48 H 1.09003 * 110.56467 * 29.70669 * 28 11 9 49 49 H 1.08996 * 110.07917 * 267.85608 * 28 11 9 50 50 H 1.07999 * 120.52625 * 179.74851 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1610 -1.2055 -0.0005 5 6 1.4815 -2.4228 -0.0005 6 6 2.2051 -3.6006 -0.0006 7 7 3.5215 -3.5875 0.0000 8 6 4.2107 -2.4520 0.0010 9 6 5.6920 -2.4925 0.0021 10 8 6.3281 -1.4571 0.0026 11 7 6.3337 -3.6776 0.0026 12 6 5.7149 -5.0131 0.0026 13 6 6.6742 -5.9369 0.7709 14 1 6.3241 -6.1638 1.7779 15 6 6.9224 -7.2128 -0.0711 16 7 8.3797 -7.4560 0.0614 17 6 9.0255 -8.6487 0.2493 18 1 8.4720 -9.5170 0.5755 19 6 10.3904 -8.7434 0.0152 20 7 11.0320 -7.7431 -0.5504 21 14 11.3166 -10.2906 0.5029 22 1 11.3074 -11.2508 -0.6300 23 1 12.7190 -9.9411 0.8441 24 1 10.6598 -10.9098 1.6820 25 6 8.9721 -6.1019 -0.0642 26 6 8.0394 -5.1976 0.7712 27 6 8.5742 -4.9603 2.1848 28 6 7.8018 -3.8835 0.0096 29 6 3.5553 -1.2258 0.0069 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 2.3792 1.5833 -1.0276 34 1 1.6085 2.0283 0.5138 35 1 3.1499 1.1383 0.5138 36 1 0.4017 -2.4455 0.0003 37 1 1.6827 -4.5459 -0.0001 38 1 5.5925 -5.3687 -1.0204 39 1 4.7480 -4.9773 0.5047 40 1 6.6581 -7.0409 -1.1145 41 1 6.3576 -8.0531 0.3326 42 1 11.9857 -7.8093 -0.7144 43 1 9.9823 -6.0886 0.3448 44 1 8.9799 -5.7847 -1.1070 45 1 9.5418 -4.4616 2.1283 46 1 7.8742 -4.3339 2.7377 47 1 8.6877 -5.9165 2.6956 48 1 8.3015 -3.0600 0.5198 49 1 8.1723 -3.9710 -1.0117 50 1 4.1172 -0.3035 0.0118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092314362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:51 Heat of formation + Delta-G solvation = 41.348827 kcal Electronic energy + Delta-G solvation = -30597.639708 eV Core-core repulsion = 26625.616088 eV Total energy + Delta-G solvation = -3972.023620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88740 -40.93843 -39.50546 -37.86388 -36.52924 -34.27994 -33.05118 -32.40726 -32.13502 -31.10018 -29.31204 -28.09289 -27.54851 -26.60705 -26.38973 -24.79415 -23.66056 -22.84779 -22.14456 -20.64856 -19.88097 -18.87467 -18.27006 -18.11372 -17.06537 -16.89926 -16.73589 -16.58454 -16.14777 -16.08897 -15.79062 -15.43029 -15.26232 -15.13462 -14.98503 -14.86614 -14.30206 -14.06200 -13.89723 -13.57379 -13.49059 -13.26425 -13.20409 -13.16183 -13.07689 -12.93880 -12.69214 -12.44626 -12.35566 -12.32752 -11.90757 -11.70989 -11.57764 -11.56682 -11.50633 -11.35213 -11.12770 -10.69886 -10.24792 -10.16643 -9.64543 -8.82942 -8.65740 -7.85322 -5.21450 -0.27650 0.47773 1.48798 1.50054 1.59323 1.73494 1.80246 2.12565 2.52298 2.96046 3.11572 3.34059 3.53881 3.58905 3.73213 3.91256 3.95597 4.00616 4.13169 4.14691 4.26645 4.33410 4.39133 4.44919 4.48218 4.49820 4.55409 4.67725 4.69177 4.74126 4.79365 4.84260 4.89192 4.91725 4.96196 4.99053 5.01504 5.06698 5.14660 5.21958 5.22922 5.31976 5.47443 5.50961 5.57601 5.68820 5.75979 6.13515 6.23802 6.26595 6.49512 6.81463 7.05529 7.13049 7.73678 8.54607 9.27892 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.002322 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.266059 B =12057.655122 C =12689.559270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.627 5.627 3 C 0.081 3.919 4 C 0.238 3.762 5 C -0.221 4.221 6 C 0.134 3.866 7 N -0.512 5.512 8 C 0.106 3.894 9 C 0.575 3.425 10 O -0.579 6.579 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.098 4.098 14 H 0.097 0.903 15 C 0.131 3.869 16 N -0.618 5.618 17 C -0.231 4.231 18 H 0.082 0.918 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.976 3.024 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.176 3.824 26 C -0.088 4.088 27 C -0.109 4.109 28 C 0.122 3.878 29 C -0.198 4.198 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.168 0.832 37 H 0.194 0.806 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.247 0.753 43 H 0.057 0.943 44 H -0.002 1.002 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.178 15.788 3.083 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.337 5.337 3 C -0.061 4.061 4 C 0.126 3.874 5 C -0.246 4.246 6 C -0.024 4.024 7 N -0.228 5.228 8 C -0.030 4.030 9 C 0.364 3.636 10 O -0.459 6.459 11 N -0.323 5.323 12 C -0.007 4.007 13 C -0.119 4.119 14 H 0.115 0.885 15 C 0.005 3.995 16 N -0.341 5.341 17 C -0.359 4.359 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.192 1.192 25 C 0.050 3.950 26 C -0.090 4.090 27 C -0.166 4.166 28 C -0.001 4.001 29 C -0.225 4.225 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.185 0.815 37 H 0.211 0.789 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.309 15.692 3.059 29.936 hybrid contribution 0.960 0.092 -0.284 1.005 sum -24.349 15.784 2.775 29.150 Atomic orbital electron populations 1.21924 0.76745 1.04558 1.02291 1.46585 1.06710 1.02619 1.77802 1.21902 0.97577 0.84522 1.02102 1.18072 0.90136 0.88042 0.91190 1.22101 1.02719 0.90741 1.09034 1.23179 0.88303 0.99556 0.91343 1.67712 1.10408 1.27884 1.16766 1.20446 0.92212 0.90332 1.00034 1.18068 0.87036 0.81965 0.76500 1.90716 1.68260 1.33407 1.53543 1.48738 1.07502 1.06478 1.69532 1.22642 0.98344 0.78942 1.00737 1.23124 0.93555 0.95224 0.99957 0.88473 1.22100 0.85459 0.95637 0.96263 1.45362 1.01892 1.02695 1.84159 1.19353 0.91494 0.88233 1.36865 0.90021 1.25699 0.98330 1.00925 1.00837 1.70080 1.08350 1.33241 1.47910 0.85124 0.77434 0.78938 0.78080 1.21361 1.22289 1.19244 1.21527 0.96197 0.83386 0.93878 1.22359 0.96832 0.93407 0.96433 1.21466 1.00165 1.00984 0.93995 1.22277 0.80555 0.97307 0.99957 1.21525 0.93712 0.98694 1.08584 0.91503 0.88569 0.91640 0.92655 0.88567 0.92151 0.81487 0.78895 0.91848 0.85217 0.95549 0.92086 0.94341 0.92488 0.98381 0.92996 0.92011 0.93183 0.90703 0.92140 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 9.43 127.77 1.21 1.66 16 2 N -0.63 -7.80 3.40 -746.73 -2.54 -10.33 16 3 C 0.08 0.85 10.19 127.77 1.30 2.15 16 4 C 0.24 4.24 6.57 38.55 0.25 4.50 16 5 C -0.22 -3.08 9.39 22.55 0.21 -2.86 16 6 C 0.13 2.21 11.17 84.72 0.95 3.15 16 7 N -0.51 -12.49 6.57 -185.20 -1.22 -13.71 16 8 C 0.11 3.02 6.72 41.83 0.28 3.30 16 9 C 0.58 20.15 7.87 86.89 0.68 20.83 16 10 O -0.58 -23.20 16.56 -3.77 -0.06 -23.26 16 11 N -0.59 -20.47 3.34 -815.68 -2.72 -23.20 16 12 C 0.12 3.59 5.84 86.50 0.51 4.09 16 13 C -0.10 -3.40 3.76 -9.13 -0.03 -3.43 16 14 H 0.10 3.14 7.93 -2.39 -0.02 3.12 16 15 C 0.13 5.31 6.77 86.67 0.59 5.89 16 16 N -0.62 -31.59 3.37 -686.08 -2.31 -33.90 16 17 C -0.23 -12.80 10.37 84.03 0.87 -11.93 16 18 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 19 C -0.06 -3.66 5.41 84.86 0.46 -3.20 16 20 N -0.95 -57.33 10.87 21.65 0.24 -57.10 16 21 Si 0.98 45.73 29.56 68.60 2.03 47.76 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.18 8.69 5.10 86.52 0.44 9.13 16 26 C -0.09 -3.40 1.07 -50.67 -0.05 -3.45 16 27 C -0.11 -3.91 8.57 71.98 0.62 -3.30 16 28 C 0.12 4.53 6.28 86.29 0.54 5.07 16 29 C -0.20 -4.84 8.79 22.75 0.20 -4.64 16 30 H 0.07 0.26 7.99 -2.38 -0.02 0.24 16 31 H 0.10 0.15 7.79 -2.39 -0.02 0.13 16 32 H 0.07 0.28 7.99 -2.39 -0.02 0.26 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.50 7.92 -2.39 -0.02 0.48 16 35 H 0.06 0.81 6.25 -2.39 -0.01 0.79 16 36 H 0.17 1.17 6.88 -2.91 -0.02 1.15 16 37 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.06 2.02 7.10 -2.39 -0.02 2.00 16 39 H 0.13 3.60 5.44 -2.39 -0.01 3.59 16 40 H 0.03 1.09 7.18 -2.39 -0.02 1.07 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.06 3.18 6.23 -2.39 -0.01 3.17 16 44 H 0.00 -0.09 7.18 -2.39 -0.02 -0.11 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.07 2.78 7.64 -2.39 -0.02 2.76 16 49 H 0.06 2.39 7.11 -2.39 -0.02 2.37 16 50 H 0.14 3.43 5.85 -2.91 -0.02 3.41 16 Total: -1.00 -74.35 389.70 3.38 -70.98 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.95 Total: 15.79 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 9.02 Total: 26.96 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -8.55 Total: -138.23 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.35 3.38 -70.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092314362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.326 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds