Wall clock time and date at job start Wed Apr 1 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47117 * 269.99730 * 3 2 1 5 5 H 1.48494 * 109.47289 * 29.99631 * 3 2 1 6 6 H 1.48501 * 109.47035 * 149.99909 * 3 2 1 7 7 C 1.38810 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00137 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.83847 * 0.02562 * 9 7 2 11 11 H 1.08989 * 115.85906 * 359.62416 * 10 9 7 12 12 C 1.55850 * 101.04904 * 233.95061 * 10 9 7 13 13 C 1.54855 * 103.44655 * 327.06133 * 12 10 9 14 14 C 1.50241 * 130.83713 * 179.97438 * 9 7 2 15 15 H 1.08992 * 115.86492 * 359.66131 * 14 9 7 16 16 C 1.55848 * 101.04813 * 233.98372 * 14 9 7 17 17 H 1.09008 * 110.62527 * 208.41482 * 16 14 9 18 18 N 1.46498 * 110.62901 * 85.55365 * 16 14 9 19 19 C 1.34774 * 120.00541 * 154.99561 * 18 16 14 20 20 O 1.21283 * 119.99619 * 0.02562 * 19 18 16 21 21 C 1.50690 * 120.00124 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47022 * 180.02562 * 21 19 18 23 23 C 1.35316 * 126.50226 * 264.97670 * 22 21 19 24 24 N 1.30744 * 108.77221 * 179.97438 * 23 22 21 25 25 C 1.33583 * 109.14530 * 359.97438 * 24 23 22 26 26 C 1.35026 * 107.97682 * 0.06032 * 25 24 23 27 27 C 1.50652 * 124.44692 * 179.97438 * 26 25 24 28 28 C 1.53395 * 108.38781 * 343.59347 * 27 26 25 29 29 C 1.53126 * 109.44192 * 49.64810 * 28 27 26 30 30 C 1.50868 * 128.02648 * 180.16695 * 25 24 23 31 31 C 1.54852 * 103.44848 * 327.06045 * 16 14 9 32 32 H 0.96998 * 119.99800 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.62821 * 85.54945 * 12 10 9 34 34 H 1.09002 * 110.62237 * 208.41284 * 12 10 9 35 35 H 1.08997 * 110.62747 * 241.50957 * 13 12 10 36 36 H 1.08995 * 110.62349 * 118.48854 * 13 12 10 37 37 H 0.97006 * 119.99292 * 335.00183 * 18 16 14 38 38 H 1.09000 * 109.47091 * 60.00513 * 21 19 18 39 39 H 1.09000 * 109.47646 * 300.00020 * 21 19 18 40 40 H 1.08003 * 125.60948 * 359.94873 * 23 22 21 41 41 H 1.09003 * 109.67868 * 223.87620 * 27 26 25 42 42 H 1.09000 * 109.71285 * 103.34039 * 27 26 25 43 43 H 1.08996 * 109.47763 * 289.65425 * 28 27 26 44 44 H 1.08998 * 109.47798 * 169.63819 * 28 27 26 45 45 H 1.08996 * 109.46356 * 50.00217 * 29 28 27 46 46 H 1.09000 * 109.45915 * 169.96536 * 29 28 27 47 47 H 1.09000 * 109.67882 * 43.50350 * 30 25 24 48 48 H 1.08998 * 109.67833 * 282.95384 * 30 25 24 49 49 H 1.09003 * 110.62489 * 118.48756 * 31 16 14 50 50 H 1.08990 * 110.62862 * 241.51441 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1500 -2.6705 -0.0005 11 1 -0.8013 -1.7966 0.0051 12 6 -0.2751 -3.6102 1.2365 13 6 1.0660 -4.3845 1.2376 14 6 1.8188 -3.8072 0.0005 15 1 2.9012 -3.9344 -0.0053 16 6 1.0672 -4.3845 -1.2367 17 1 0.8957 -5.4543 -1.1170 18 7 1.8171 -4.1182 -2.4667 19 6 1.6533 -4.9143 -3.5417 20 8 0.8846 -5.8511 -3.4909 21 6 2.4243 -4.6400 -4.8070 22 7 2.0718 -5.6381 -5.8198 23 6 2.7401 -6.7839 -6.0875 24 7 2.1246 -7.4139 -7.0537 25 6 1.0579 -6.7035 -7.4304 26 6 1.0098 -5.5889 -6.6698 27 6 -0.0488 -4.5232 -6.7855 28 6 -0.7713 -4.7026 -8.1267 29 6 -1.1930 -6.1659 -8.2868 30 6 0.0511 -7.0365 -8.5035 31 6 -0.2739 -3.6103 -1.2370 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3830 -3.0280 2.1517 34 1 -1.1157 -4.2935 1.1162 35 1 0.8922 -5.4537 1.1166 36 1 1.6231 -4.1862 2.1532 37 1 2.4317 -3.3687 -2.5073 38 1 3.4931 -4.6937 -4.6001 39 1 2.1751 -3.6450 -5.1759 40 1 3.6348 -7.1219 -5.5859 41 1 0.4164 -3.5382 -6.7480 42 1 -0.7624 -4.6236 -5.9677 43 1 -0.1008 -4.4265 -8.9405 44 1 -1.6550 -4.0649 -8.1516 45 1 -1.7147 -6.4940 -7.3877 46 1 -1.8565 -6.2606 -9.1464 47 1 -0.2229 -8.0894 -8.4357 48 1 0.4787 -6.8304 -9.4847 49 1 -0.3809 -3.0281 -2.1522 50 1 -1.1128 -4.2955 -1.1161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097555962.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:40 Heat of formation + Delta-G solvation = 60.791509 kcal Electronic energy + Delta-G solvation = -30997.529123 eV Core-core repulsion = 27026.348601 eV Total energy + Delta-G solvation = -3971.180522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33068 -39.90674 -38.51564 -36.68708 -34.18408 -33.97407 -32.63606 -30.58382 -29.23194 -29.14685 -28.93692 -28.37104 -26.89705 -24.30837 -23.58965 -22.23031 -21.83744 -20.83263 -20.08480 -19.84448 -18.93379 -18.74796 -17.33778 -17.12932 -17.02053 -15.70201 -15.51654 -15.20624 -14.89418 -14.71666 -14.51918 -14.05798 -13.96839 -13.87046 -13.61913 -13.39323 -13.28798 -12.93038 -12.57496 -12.46171 -12.13804 -11.96148 -11.91644 -11.36279 -11.22948 -11.03778 -11.02159 -10.99332 -10.98669 -10.96478 -10.63771 -10.46328 -10.20272 -10.16153 -10.00321 -9.78512 -9.55550 -9.31915 -9.17979 -9.06837 -8.64837 -8.03315 -7.06139 -5.84988 -3.24735 1.98777 2.61057 2.63818 3.16532 3.27613 3.33556 3.35980 3.46527 4.30764 4.39102 4.51037 4.62109 4.73619 4.77079 4.80466 4.85880 5.01576 5.06796 5.22907 5.24897 5.38822 5.47685 5.52890 5.57378 5.58351 5.64380 5.77902 5.78813 5.86556 5.94948 5.95707 5.98024 6.04415 6.12361 6.18061 6.22018 6.31381 6.38191 6.42716 6.49935 6.62986 6.71999 6.81425 6.84641 6.96827 7.16799 7.22022 7.36319 7.68377 7.74964 8.06424 8.14084 8.34529 8.96413 9.59871 10.40438 11.23827 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.002864 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.126311 B = 9774.107970 C =10361.043549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.129 3.871 17 H 0.080 0.920 18 N -0.700 5.700 19 C 0.492 3.508 20 O -0.531 6.531 21 C 0.083 3.917 22 N -0.432 5.432 23 C 0.181 3.819 24 N -0.486 5.486 25 C -0.005 4.005 26 C -0.007 4.007 27 C -0.045 4.045 28 C -0.111 4.111 29 C -0.119 4.119 30 C -0.029 4.029 31 C -0.141 4.141 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.404 0.596 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.202 0.798 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -8.429 -11.468 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.106 0.894 16 C 0.023 3.977 17 H 0.098 0.902 18 N -0.350 5.350 19 C 0.275 3.725 20 O -0.408 6.408 21 C -0.044 4.044 22 N -0.113 5.113 23 C -0.100 4.100 24 N -0.204 5.204 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.084 4.084 28 C -0.149 4.149 29 C -0.157 4.157 30 C -0.068 4.068 31 C -0.182 4.182 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.239 0.761 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.218 0.782 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.690 -9.404 -11.636 15.056 hybrid contribution 0.754 1.955 0.679 2.202 sum 2.444 -7.449 -10.958 13.473 Atomic orbital electron populations 1.69458 1.05027 1.25098 1.56995 1.24710 0.95590 0.97523 1.02640 0.86071 0.78533 0.83317 0.77516 1.21691 1.21645 1.20775 1.18991 0.90187 0.81871 1.43481 0.90387 1.46544 1.01622 0.98557 1.84416 1.23756 0.87404 0.95302 0.88814 0.82968 1.23073 0.95235 0.98297 1.01302 1.22878 0.97708 0.97633 0.98520 1.23177 0.96011 0.86990 0.92141 0.89391 1.22692 0.92877 0.98678 0.83455 0.90206 1.45972 1.45185 1.31166 1.12669 1.20555 0.83568 0.83423 0.84975 1.90757 1.37048 1.30046 1.82946 1.21720 1.01899 0.93340 0.87447 1.44528 1.21651 1.18573 1.26596 1.24866 1.01071 0.84971 0.99103 1.69926 1.07979 1.29581 1.12886 1.20362 0.97843 0.93179 1.02018 1.20837 0.93400 1.01358 0.96644 1.20104 0.94359 0.94869 0.99023 1.21527 1.00061 0.97033 0.96280 1.21615 0.97116 0.94729 1.02248 1.19883 0.91895 0.99970 0.95020 1.23425 0.94874 0.98338 1.01539 0.93458 0.92574 0.93308 0.93007 0.92354 0.76097 0.85946 0.86380 0.78161 0.91152 0.90217 0.91540 0.91014 0.91487 0.91231 0.90771 0.91058 0.92286 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.68 10.47 55.49 0.58 -24.09 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.22 -5.36 10.59 -15.06 -0.16 -5.52 16 8 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.59 -13.12 2.99 -145.81 -0.44 -13.56 16 10 C 0.15 3.33 4.72 -62.82 -0.30 3.03 16 11 H 0.15 3.82 5.52 -51.94 -0.29 3.53 16 12 C -0.14 -2.65 6.44 -24.23 -0.16 -2.81 16 13 C -0.13 -2.21 6.44 -24.21 -0.16 -2.36 16 14 C 0.13 2.27 5.06 -62.77 -0.32 1.96 16 15 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.13 2.23 2.80 -65.43 -0.18 2.05 16 17 H 0.08 1.43 7.23 -51.92 -0.38 1.05 16 18 N -0.70 -10.49 5.07 -51.40 -0.26 -10.75 16 19 C 0.49 7.23 7.90 -10.99 -0.09 7.14 16 20 O -0.53 -10.04 16.07 5.55 0.09 -9.95 16 21 C 0.08 0.89 6.48 -5.20 -0.03 0.86 16 22 N -0.43 -5.66 2.23 -115.26 -0.26 -5.92 16 23 C 0.18 2.42 12.57 -89.92 -1.13 1.29 16 24 N -0.49 -7.55 11.25 -10.74 -0.12 -7.67 16 25 C 0.00 -0.07 6.98 -82.89 -0.58 -0.65 16 26 C -0.01 -0.10 6.73 -81.86 -0.55 -0.65 16 27 C -0.05 -0.53 6.06 -27.70 -0.17 -0.69 16 28 C -0.11 -1.04 5.91 -26.46 -0.16 -1.20 16 29 C -0.12 -1.14 5.90 -26.46 -0.16 -1.30 16 30 C -0.03 -0.33 6.30 -27.60 -0.17 -0.51 16 31 C -0.14 -2.73 6.23 -24.26 -0.15 -2.88 16 32 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 35 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 5.65 8.66 -40.82 -0.35 5.29 16 38 H 0.12 0.90 8.13 -51.93 -0.42 0.48 16 39 H 0.12 1.09 7.96 -51.93 -0.41 0.67 16 40 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 50 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -31.81 394.04 -12.13 -43.94 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.09 Total: 9.18 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.55 Total: -2.55 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.49 Total: -61.99 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.81 -12.13 -43.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097555962.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.735 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds