Wall clock time and date at job start Wed Apr 1 2020 02:49:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86794 * 120.00097 * 2 1
4 4 H 1.48501 * 109.47174 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47366 * 299.99979 * 3 2 1
6 6 H 1.48502 * 109.47273 * 59.99811 * 3 2 1
7 7 C 1.38812 * 119.99979 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00209 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99988 * 0.02562 * 7 2 1
10 10 C 1.47218 * 126.70068 * 359.97437 * 9 7 2
11 11 C 1.53783 * 106.38082 * 211.28037 * 10 9 7
12 12 H 1.08991 * 112.39078 * 219.30777 * 11 10 9
13 13 C 1.54324 * 109.78694 * 95.21902 * 11 10 9
14 14 C 1.55052 * 103.93798 * 221.69328 * 13 11 10
15 15 C 1.55063 * 102.11169 * 40.05690 * 14 13 11
16 16 C 1.54324 * 103.93252 * 319.94951 * 15 14 13
17 17 N 1.46504 * 111.68698 * 262.78499 * 16 15 14
18 18 C 1.34778 * 120.00251 * 298.98699 * 17 16 15
19 19 O 1.21284 * 119.99680 * 0.02562 * 18 17 16
20 20 C 1.50696 * 120.00019 * 180.02562 * 18 17 16
21 21 H 1.09002 * 109.71588 * 60.62134 * 20 18 17
22 22 C 1.53446 * 109.75728 * 181.25715 * 20 18 17
23 23 C 1.53147 * 109.18821 * 168.25877 * 22 20 18
24 24 C 1.53246 * 109.55747 * 290.56097 * 23 22 20
25 25 N 1.46597 * 108.79732 * 50.56757 * 24 23 22
26 26 N 1.39651 * 127.54969 * 162.65665 * 25 24 23
27 27 C 1.31020 * 108.13123 * 180.13458 * 26 25 24
28 28 C 1.40061 * 108.25271 * 359.96784 * 27 26 25
29 29 C 1.34754 * 107.79592 * 359.97438 * 28 27 26
30 30 C 1.48671 * 126.20365 * 180.61690 * 9 7 2
31 31 H 0.96998 * 119.99682 * 0.02562 * 1 2 3
32 32 H 1.09003 * 110.07109 * 92.05642 * 10 9 7
33 33 H 1.08992 * 110.12244 * 330.53891 * 10 9 7
34 34 H 1.08997 * 110.53606 * 103.07959 * 13 11 10
35 35 H 1.09007 * 110.53655 * 340.30443 * 13 11 10
36 36 H 1.08995 * 110.90453 * 281.85834 * 14 13 11
37 37 H 1.08996 * 110.93582 * 158.27418 * 14 13 11
38 38 H 1.08996 * 110.53731 * 201.33459 * 15 14 13
39 39 H 1.08999 * 110.65390 * 78.61991 * 15 14 13
40 40 H 0.97002 * 119.99560 * 118.99543 * 17 16 15
41 41 H 1.09000 * 109.51617 * 288.16759 * 22 20 18
42 42 H 1.08995 * 109.51516 * 48.34373 * 22 20 18
43 43 H 1.09001 * 109.45788 * 50.58607 * 23 22 20
44 44 H 1.09000 * 109.45821 * 170.53476 * 23 22 20
45 45 H 1.08998 * 109.58986 * 170.36399 * 24 23 22
46 46 H 1.09000 * 109.57970 * 290.64345 * 24 23 22
47 47 H 1.07991 * 125.87988 * 179.97438 * 27 26 25
48 48 H 1.08002 * 126.10370 * 180.24560 * 28 27 26
49 49 H 1.08999 * 110.91137 * 29.99550 * 30 9 7
50 50 H 1.08999 * 109.94718 * 267.98474 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 -0.1365 -2.5598 0.0005
11 6 -0.4202 -3.8627 0.7666
12 1 -1.2230 -4.4443 0.3137
13 6 -0.7337 -3.5428 2.2434
14 6 0.0246 -4.6411 3.0326
15 6 1.3550 -4.7489 2.2434
16 6 0.9211 -4.6371 0.7666
17 7 0.7880 -5.9548 0.1402
18 6 1.8572 -6.7708 0.0533
19 8 2.9294 -6.4144 0.4941
20 6 1.7204 -8.1259 -0.5916
21 1 1.4071 -8.0095 -1.6291
22 6 3.0641 -8.8647 -0.5363
23 6 2.8483 -10.3314 -0.9204
24 6 2.0586 -11.0404 0.1851
25 7 0.8677 -10.2452 0.4991
26 7 -0.2778 -10.6610 1.1813
27 6 -1.1041 -9.6464 1.2468
28 6 -0.5072 -8.5524 0.6075
29 6 0.7011 -8.9464 0.1593
30 6 1.9254 -3.7483 0.0140
31 1 -0.4849 0.8401 -0.0004
32 1 -0.5038 -2.6400 -1.0226
33 1 -0.6129 -1.7186 0.5039
34 1 -1.8056 -3.6092 2.4298
35 1 -0.3591 -2.5540 2.5083
36 1 -0.5202 -5.5847 3.0071
37 1 0.2065 -4.3268 4.0603
38 1 1.8333 -5.7105 2.4297
39 1 2.0262 -3.9317 2.5076
40 1 -0.0696 -6.2399 -0.2121
41 1 3.7620 -8.4041 -1.2355
42 1 3.4691 -8.8086 0.4741
43 1 2.2906 -10.3836 -1.8555
44 1 3.8146 -10.8197 -1.0465
45 1 1.7570 -12.0299 -0.1583
46 1 2.6812 -11.1364 1.0746
47 1 -2.0780 -9.6524 1.7135
48 1 -0.9366 -7.5676 0.4976
49 1 2.8842 -3.7456 0.5323
50 1 2.0524 -4.1088 -1.0068
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098909493.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:49:21
Heat of formation + Delta-G solvation = 49.157026 kcal
Electronic energy + Delta-G solvation = -31931.919781 eV
Core-core repulsion = 27960.234751 eV
Total energy + Delta-G solvation = -3971.685031 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.71546 -41.46751 -39.66157 -37.22157 -36.17485 -34.91514 -33.64625 -33.21187
-31.30886 -30.94236 -29.51406 -29.16255 -26.55532 -26.28945 -25.53323 -23.28128
-22.65863 -22.25649 -22.15148 -20.91776 -20.32753 -19.83994 -19.02704 -18.13790
-17.57708 -17.22487 -16.72003 -16.58099 -16.03110 -15.74252 -15.55883 -15.36271
-15.18121 -15.11708 -14.96027 -14.64394 -14.58864 -14.30903 -14.19736 -13.62300
-13.37609 -13.08645 -13.07157 -12.83492 -12.72767 -12.41740 -12.15015 -12.08177
-12.05699 -12.01638 -12.00204 -11.84056 -11.71320 -11.64921 -11.60705 -11.56265
-11.40280 -10.86979 -10.72717 -10.14665 -10.02038 -9.50729 -8.89453 -7.74284
-5.21500 0.81505 1.44410 1.46893 1.47270 1.57588 1.72430 1.85241
2.16895 2.50039 3.31463 3.37338 3.39363 3.46523 3.57210 3.65376
3.76089 3.85165 3.91316 4.03125 4.15015 4.22733 4.28969 4.42073
4.42720 4.51762 4.56956 4.63245 4.66571 4.72309 4.73615 4.79191
4.80377 4.91180 4.95109 4.98168 4.99902 5.05011 5.11617 5.14898
5.23047 5.23534 5.29696 5.43936 5.49152 5.62255 5.72835 5.74419
5.85178 6.02202 6.39899 6.58512 6.75243 7.12172 7.26555 7.75855
8.42911 9.24081
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.019873 B = 0.003081 C = 0.002829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1408.635161 B = 9086.863285 C = 9895.313323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C -0.060 4.060
3 Si 0.977 3.023
4 H -0.273 1.273
5 H -0.290 1.290
6 H -0.288 1.288
7 C -0.236 4.236
8 H 0.071 0.929
9 N -0.615 5.615
10 C 0.144 3.856
11 C -0.101 4.101
12 H 0.106 0.894
13 C -0.104 4.104
14 C -0.110 4.110
15 C -0.107 4.107
16 C 0.173 3.827
17 N -0.694 5.694
18 C 0.524 3.476
19 O -0.564 6.564
20 C -0.039 4.039
21 H 0.142 0.858
22 C -0.108 4.108
23 C -0.123 4.123
24 C 0.121 3.879
25 N -0.370 5.370
26 N -0.324 5.324
27 C 0.044 3.956
28 C -0.272 4.272
29 C 0.083 3.917
30 C 0.142 3.858
31 H 0.249 0.751
32 H -0.017 1.017
33 H 0.102 0.898
34 H 0.086 0.914
35 H 0.040 0.960
36 H 0.087 0.913
37 H 0.068 0.932
38 H 0.061 0.939
39 H 0.044 0.956
40 H 0.411 0.589
41 H 0.090 0.910
42 H 0.061 0.939
43 H 0.087 0.913
44 H 0.123 0.877
45 H 0.108 0.892
46 H 0.085 0.915
47 H 0.209 0.791
48 H 0.159 0.841
49 H 0.031 0.969
50 H 0.007 0.993
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.687 -23.245 -0.202 23.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.253 4.253
3 Si 0.806 3.194
4 H -0.198 1.198
5 H -0.217 1.217
6 H -0.215 1.215
7 C -0.365 4.365
8 H 0.089 0.911
9 N -0.340 5.340
10 C 0.019 3.981
11 C -0.121 4.121
12 H 0.124 0.876
13 C -0.142 4.142
14 C -0.147 4.147
15 C -0.145 4.145
16 C 0.085 3.915
17 N -0.347 5.347
18 C 0.310 3.690
19 O -0.442 6.442
20 C -0.062 4.062
21 H 0.159 0.841
22 C -0.146 4.146
23 C -0.161 4.161
24 C 0.001 3.999
25 N -0.154 5.154
26 N -0.145 5.145
27 C -0.141 4.141
28 C -0.301 4.301
29 C -0.045 4.045
30 C 0.015 3.985
31 H 0.059 0.941
32 H 0.000 1.000
33 H 0.120 0.880
34 H 0.105 0.895
35 H 0.059 0.941
36 H 0.105 0.895
37 H 0.087 0.913
38 H 0.080 0.920
39 H 0.063 0.937
40 H 0.251 0.749
41 H 0.109 0.891
42 H 0.080 0.920
43 H 0.106 0.894
44 H 0.141 0.859
45 H 0.126 0.874
46 H 0.104 0.896
47 H 0.226 0.774
48 H 0.177 0.823
49 H 0.049 0.951
50 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges -0.628 -24.103 0.385 24.115
hybrid contribution 0.086 2.046 -0.502 2.108
sum -0.541 -22.058 -0.117 22.065
Atomic orbital electron populations
1.69834 1.05813 1.24876 1.58546 1.25502 0.96660 1.00413 1.02677
0.85028 0.77867 0.79602 0.76930 1.19826 1.21692 1.21519 1.19408
0.90688 0.83741 1.42645 0.91060 1.45038 1.02698 1.00078 1.86156
1.21822 0.84259 0.96584 0.95427 1.22915 0.94961 0.96396 0.97801
0.87638 1.22350 1.00720 0.98081 0.93062 1.22538 0.94746 0.99135
0.98292 1.22516 0.97976 1.00503 0.93533 1.21442 0.95807 0.81712
0.92490 1.46069 1.12929 1.15629 1.60121 1.20569 0.83657 0.86278
0.78499 1.90717 1.28324 1.76431 1.48731 1.20205 0.95708 0.89659
1.00604 0.84076 1.21533 0.94216 0.95301 1.03533 1.21971 1.02511
0.93963 0.97649 1.22135 0.82220 0.95477 1.00076 1.48948 1.14863
1.08349 1.43205 1.77241 0.94831 1.24692 1.17744 1.24383 1.00419
0.90120 0.99144 1.21378 0.96032 1.02047 1.10687 1.20623 0.96486
0.86620 1.00761 1.21838 0.95248 0.85467 0.95950 0.94103 0.99957
0.88038 0.89540 0.94095 0.89492 0.91292 0.92039 0.93711 0.74950
0.89139 0.92039 0.89444 0.85866 0.87429 0.89633 0.77401 0.82348
0.95097 0.97520
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -54.86 10.08 21.65 0.22 -54.64 16
2 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16
3 Si 0.98 46.12 29.55 68.60 2.03 48.15 16
4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16
6 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16
7 C -0.24 -13.59 10.33 84.03 0.87 -12.72 16
8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16
9 N -0.61 -32.42 3.42 -691.54 -2.37 -34.79 16
10 C 0.14 6.92 5.61 86.51 0.49 7.40 16
11 C -0.10 -3.52 3.63 -9.44 -0.03 -3.55 16
12 H 0.11 2.93 7.71 -2.39 -0.02 2.91 16
13 C -0.10 -3.41 6.25 31.75 0.20 -3.21 16
14 C -0.11 -3.14 6.92 32.00 0.22 -2.92 16
15 C -0.11 -3.74 5.50 31.75 0.17 -3.56 16
16 C 0.17 6.07 0.93 4.96 0.00 6.07 16
17 N -0.69 -18.81 4.61 -416.81 -1.92 -20.73 16
18 C 0.52 14.56 6.38 87.66 0.56 15.12 16
19 O -0.56 -20.25 13.74 -3.04 -0.04 -20.29 16
20 C -0.04 -0.76 2.92 -12.09 -0.04 -0.79 16
21 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16
22 C -0.11 -1.81 4.75 30.79 0.15 -1.66 16
23 C -0.12 -1.21 5.93 30.73 0.18 -1.02 16
24 C 0.12 1.60 7.28 86.44 0.63 2.23 16
25 N -0.37 -7.52 4.04 -334.08 -1.35 -8.87 16
26 N -0.32 -7.46 12.62 -56.80 -0.72 -8.17 16
27 C 0.04 0.86 12.03 85.26 1.03 1.88 16
28 C -0.27 -5.31 9.80 21.91 0.21 -5.09 16
29 C 0.08 1.69 6.11 41.28 0.25 1.95 16
30 C 0.14 6.42 5.36 86.22 0.46 6.89 16
31 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16
32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16
33 H 0.10 5.50 4.93 -2.39 -0.01 5.48 16
34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16
35 H 0.04 1.66 7.61 -2.38 -0.02 1.64 16
36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16
39 H 0.04 1.84 7.56 -2.39 -0.02 1.82 16
40 H 0.41 8.64 5.90 -92.71 -0.55 8.09 16
41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
42 H 0.06 1.31 7.72 -2.39 -0.02 1.29 16
43 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16
44 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16
45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16
46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
47 H 0.21 2.64 8.06 -2.92 -0.02 2.62 16
48 H 0.16 2.62 5.86 -2.91 -0.02 2.60 16
49 H 0.03 1.51 7.52 -2.39 -0.02 1.49 16
50 H 0.01 0.32 8.05 -2.39 -0.02 0.30 16
Total: -1.00 -74.76 379.72 2.08 -72.67
By element:
Atomic # 1 Polarization: 22.18 SS G_CDS: 0.41 Total: 22.59 kcal
Atomic # 6 Polarization: -1.74 SS G_CDS: 5.82 Total: 4.08 kcal
Atomic # 7 Polarization: -121.07 SS G_CDS: -6.13 Total: -127.20 kcal
Atomic # 8 Polarization: -20.25 SS G_CDS: -0.04 Total: -20.29 kcal
Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal
Total: -74.76 2.08 -72.67 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098909493.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.831 kcal
(2) G-P(sol) polarization free energy of solvation -74.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds