Wall clock time and date at job start Wed Apr 1 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 274.97922 * 3 2 1 5 5 H 1.48501 * 109.47087 * 34.98446 * 3 2 1 6 6 H 1.48494 * 109.46720 * 154.98030 * 3 2 1 7 7 C 1.38813 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99764 * 188.94993 * 7 2 1 9 9 N 1.36940 * 119.99972 * 8.94664 * 7 2 1 10 10 C 1.47214 * 126.70049 * 194.06017 * 9 7 2 11 11 C 1.53778 * 106.37898 * 211.30578 * 10 9 7 12 12 H 1.09000 * 111.70757 * 219.69833 * 11 10 9 13 13 C 1.54319 * 109.79574 * 95.21973 * 11 10 9 14 14 C 1.55050 * 103.93821 * 221.68965 * 13 11 10 15 15 C 1.55053 * 102.10916 * 40.05819 * 14 13 11 16 16 C 1.54320 * 103.93618 * 319.94341 * 15 14 13 17 17 N 1.46508 * 111.69296 * 262.79035 * 16 15 14 18 18 C 1.34774 * 119.99807 * 298.88403 * 17 16 15 19 19 O 1.21279 * 120.00510 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99882 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.47357 * 299.99691 * 20 18 17 22 22 C 1.53112 * 109.47542 * 179.97438 * 20 18 17 23 23 C 1.53362 * 109.53085 * 170.00239 * 22 20 18 24 24 C 1.50865 * 108.41046 * 49.98696 * 23 22 20 25 25 N 1.33572 * 128.03360 * 163.26721 * 24 23 22 26 26 C 1.30749 * 109.15081 * 180.08578 * 25 24 23 27 27 N 1.35317 * 108.76292 * 359.72367 * 26 25 24 28 28 H 0.97009 * 126.49750 * 180.26777 * 27 26 25 29 29 C 1.35024 * 123.98800 * 343.29840 * 24 23 22 30 30 C 1.50649 * 124.45581 * 359.89814 * 29 24 23 31 31 C 1.47208 * 126.70251 * 14.08548 * 9 7 2 32 32 H 0.97000 * 120.00347 * 359.97438 * 1 2 3 33 33 H 1.08993 * 110.07391 * 92.07231 * 10 9 7 34 34 H 1.09005 * 110.06989 * 330.53135 * 10 9 7 35 35 H 1.08999 * 110.53616 * 340.30325 * 13 11 10 36 36 H 1.08999 * 110.53542 * 103.07497 * 13 11 10 37 37 H 1.09003 * 110.90733 * 158.26023 * 14 13 11 38 38 H 1.09001 * 110.90339 * 281.82519 * 14 13 11 39 39 H 1.09005 * 110.53759 * 201.32956 * 15 14 13 40 40 H 1.09001 * 110.53566 * 78.55506 * 15 14 13 41 41 H 0.96993 * 119.99500 * 118.88220 * 17 16 15 42 42 H 1.08997 * 109.46698 * 290.02738 * 22 20 18 43 43 H 1.09007 * 109.46046 * 49.99265 * 22 20 18 44 44 H 1.09001 * 109.67100 * 169.71286 * 23 22 20 45 45 H 1.08994 * 109.67433 * 290.25206 * 23 22 20 46 46 H 1.08001 * 125.62180 * 179.97438 * 26 25 24 47 47 H 1.09004 * 109.68460 * 103.26160 * 30 29 24 48 48 H 1.09003 * 109.68856 * 223.82242 * 30 29 24 49 49 H 1.08999 * 110.07530 * 29.46915 * 31 9 7 50 50 H 1.09001 * 110.07691 * 267.92647 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5963 1.4121 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0804 -1.2079 0.1450 9 7 1.3381 -2.3808 -0.1855 10 6 1.8531 -3.7365 0.0677 11 6 1.1648 -4.6593 -0.9518 12 1 0.8897 -5.6161 -0.5081 13 6 2.0721 -4.8428 -2.1865 14 6 1.0924 -4.7603 -3.3855 15 6 0.1373 -3.6202 -2.9472 16 6 -0.0777 -3.8741 -1.4403 17 7 -1.3195 -4.6090 -1.1867 18 6 -2.5036 -4.0758 -1.5472 19 8 -2.5413 -2.9875 -2.0811 20 6 -3.7810 -4.8320 -1.2868 21 1 -3.7514 -5.7868 -1.8118 22 6 -4.9718 -4.0103 -1.7879 23 6 -6.2397 -4.8724 -1.7550 24 6 -6.3447 -5.5138 -0.3936 25 7 -7.4155 -6.0803 0.1689 26 6 -7.0944 -6.5175 1.3586 27 7 -5.7892 -6.2420 1.5859 28 1 -5.2850 -6.4570 2.3862 29 6 -5.3187 -5.6036 0.4796 30 6 -3.9299 -5.0810 0.2195 31 6 -0.0405 -2.5397 -0.6768 32 1 -0.4851 0.8400 0.0004 33 1 1.6041 -4.0479 1.0821 34 1 2.9333 -3.7592 -0.0767 35 1 2.8107 -4.0431 -2.2406 36 1 2.5622 -5.8160 -2.1596 37 1 1.6202 -4.4949 -4.3015 38 1 0.5493 -5.6972 -3.5092 39 1 -0.8087 -3.6859 -3.4848 40 1 0.6031 -2.6480 -3.1084 41 1 -1.2893 -5.4792 -0.7594 42 1 -5.1079 -3.1396 -1.1464 43 1 -4.7822 -3.6821 -2.8099 44 1 -7.1138 -4.2463 -1.9342 45 1 -6.1779 -5.6452 -2.5211 46 1 -7.7600 -7.0197 2.0450 47 1 -3.7812 -4.1475 0.7623 48 1 -3.1939 -5.8165 0.5446 49 1 -0.2960 -1.7184 -1.3463 50 1 -0.7357 -2.5692 0.1622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099111662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:24 Heat of formation + Delta-G solvation = 35.108238 kcal Electronic energy + Delta-G solvation = -31516.804537 eV Core-core repulsion = 27544.510305 eV Total energy + Delta-G solvation = -3972.294232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41416 -40.21666 -38.47277 -36.00281 -34.36682 -33.52292 -33.08793 -31.52925 -30.14722 -29.46910 -28.90694 -27.68538 -24.71463 -24.56509 -23.97789 -22.82770 -21.70560 -20.93882 -20.58293 -19.54809 -18.79246 -18.72697 -17.98069 -16.98635 -16.53216 -15.80325 -15.56715 -15.07323 -14.60851 -14.51784 -14.37509 -13.99725 -13.80516 -13.64171 -13.56403 -13.36098 -13.33572 -13.18643 -12.71720 -12.40899 -12.00609 -11.93060 -11.54458 -11.21113 -11.08074 -10.94439 -10.91699 -10.89624 -10.69281 -10.56553 -10.53000 -10.30035 -10.12684 -10.01409 -9.98051 -9.96957 -9.88305 -9.69490 -9.19563 -8.55504 -8.45631 -8.28115 -6.77875 -5.70704 -3.06812 1.87134 2.81912 2.97606 3.13898 3.41694 3.46526 3.49270 3.51979 4.29522 4.51406 4.59213 4.66838 4.77284 4.87381 5.06633 5.07783 5.08983 5.18400 5.26136 5.33390 5.41758 5.51480 5.56022 5.61697 5.65055 5.78708 5.85728 5.89226 5.94153 5.94453 6.05243 6.05435 6.08907 6.14906 6.21600 6.30225 6.34943 6.35809 6.53411 6.64080 6.65335 6.71822 6.81422 6.86051 7.11624 7.20883 7.47485 7.67388 7.85076 7.93493 7.99609 8.31777 8.69988 9.20604 9.82746 10.54027 11.41320 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.003182 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.506507 B = 8796.013733 C = 9667.819360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.136 3.864 11 C -0.107 4.107 12 H 0.072 0.928 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.110 4.110 16 C 0.147 3.853 17 N -0.713 5.713 18 C 0.514 3.486 19 O -0.515 6.515 20 C -0.097 4.097 21 H 0.097 0.903 22 C -0.099 4.099 23 C -0.033 4.033 24 C 0.006 3.994 25 N -0.487 5.487 26 C 0.173 3.827 27 N -0.561 5.561 28 H 0.420 0.580 29 C -0.020 4.020 30 C -0.034 4.034 31 C 0.179 3.821 32 H 0.254 0.746 33 H 0.013 0.987 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.390 0.610 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.207 0.793 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -17.226 -0.290 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.009 3.991 11 C -0.127 4.127 12 H 0.090 0.910 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.149 4.149 16 C 0.061 3.939 17 N -0.364 5.364 18 C 0.298 3.702 19 O -0.389 6.389 20 C -0.119 4.119 21 H 0.115 0.885 22 C -0.138 4.138 23 C -0.072 4.072 24 C -0.124 4.124 25 N -0.206 5.206 26 C -0.110 4.110 27 N -0.163 5.163 28 H 0.257 0.743 29 C -0.137 4.137 30 C -0.073 4.073 31 C 0.052 3.948 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.223 0.777 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.223 0.777 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.018 -16.212 -1.048 18.581 hybrid contribution 1.327 0.171 1.395 1.933 sum -7.690 -16.041 0.347 17.793 Atomic orbital electron populations 1.69958 1.04874 1.25301 1.55093 1.24894 0.95572 0.97854 1.01681 0.86168 0.78680 0.83729 0.77566 1.21525 1.21753 1.20599 1.18957 0.90730 0.82454 1.44143 0.90665 1.44413 1.12178 0.99884 1.75256 1.21363 0.96635 0.86681 0.94374 1.22818 0.95097 0.97811 0.97013 0.90973 1.22427 0.97618 1.00951 0.93832 1.22596 0.97442 0.98502 0.97682 1.22625 0.99007 0.98871 0.94351 1.22060 0.81494 0.94571 0.95804 1.46040 1.05974 1.21965 1.62422 1.20299 0.84492 0.86404 0.78986 1.90773 1.86763 1.19932 1.41410 1.21310 0.94146 1.00576 0.95906 0.88506 1.21438 0.91337 0.97705 1.03271 1.19986 0.98464 0.98014 0.90704 1.20587 0.89084 1.04624 0.98132 1.69968 1.29392 1.14717 1.06509 1.25008 0.83895 1.05414 0.96662 1.42942 1.11785 1.45360 1.16257 0.74251 1.20901 0.98188 1.05160 0.89440 1.20023 0.89999 1.01457 0.95801 1.21343 0.86026 0.91868 0.95536 0.93597 0.96971 0.93668 0.90765 0.92515 0.92135 0.92417 0.91648 0.90227 0.77687 0.90723 0.89746 0.90145 0.90678 0.77659 0.89358 0.90422 0.89492 0.96474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.28 10.84 55.49 0.60 -26.68 16 2 C 0.00 -0.06 5.39 -17.43 -0.09 -0.15 16 3 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.02 7.84 -52.49 -0.41 1.60 16 9 N -0.59 -14.95 3.39 -171.14 -0.58 -15.53 16 10 C 0.14 2.74 6.60 -3.25 -0.02 2.72 16 11 C -0.11 -1.74 3.63 -88.53 -0.32 -2.06 16 12 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 13 C -0.11 -1.63 6.25 -24.96 -0.16 -1.79 16 14 C -0.12 -1.79 6.92 -24.56 -0.17 -1.96 16 15 C -0.11 -1.99 5.53 -24.96 -0.14 -2.13 16 16 C 0.15 2.69 0.91 -129.73 -0.12 2.57 16 17 N -0.71 -10.56 5.09 -45.67 -0.23 -10.79 16 18 C 0.51 8.08 6.43 -10.98 -0.07 8.00 16 19 O -0.51 -10.53 13.79 5.56 0.08 -10.45 16 20 C -0.10 -1.14 2.51 -91.50 -0.23 -1.37 16 21 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16 22 C -0.10 -1.22 4.64 -26.49 -0.12 -1.35 16 23 C -0.03 -0.38 6.30 -27.62 -0.17 -0.55 16 24 C 0.01 0.07 6.98 -82.90 -0.58 -0.51 16 25 N -0.49 -6.27 11.25 -10.74 -0.12 -6.39 16 26 C 0.17 1.60 13.05 -89.92 -1.17 0.43 16 27 N -0.56 -4.76 6.15 -10.29 -0.06 -4.83 16 28 H 0.42 2.17 8.96 -40.82 -0.37 1.81 16 29 C -0.02 -0.23 7.08 -81.86 -0.58 -0.80 16 30 C -0.03 -0.36 5.43 -27.70 -0.15 -0.51 16 31 C 0.18 4.35 3.70 -3.25 -0.01 4.34 16 32 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.04 0.87 7.63 -51.93 -0.40 0.48 16 35 H 0.07 1.23 7.61 -51.93 -0.40 0.84 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.20 6.65 -51.93 -0.35 0.85 16 40 H 0.08 1.68 7.61 -51.93 -0.40 1.29 16 41 H 0.39 4.43 7.97 -40.82 -0.33 4.11 16 42 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 43 H 0.08 1.07 7.77 -51.93 -0.40 0.67 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 48 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 49 H 0.09 2.50 6.22 -51.93 -0.32 2.17 16 50 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -35.50 384.52 -11.76 -47.26 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.95 Total: 6.17 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.26 Total: -1.79 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.39 Total: -64.22 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.50 -11.76 -47.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099111662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.370 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds