Wall clock time and date at job start Wed Apr 1 2020 03:01:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86804 * 119.99736 * 2 1
4 4 H 1.48501 * 109.46996 * 274.97922 * 3 2 1
5 5 H 1.48501 * 109.47087 * 34.98446 * 3 2 1
6 6 H 1.48494 * 109.46720 * 154.98030 * 3 2 1
7 7 C 1.38813 * 119.99977 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99764 * 188.94993 * 7 2 1
9 9 N 1.36940 * 119.99972 * 8.94664 * 7 2 1
10 10 C 1.47214 * 126.70049 * 194.06017 * 9 7 2
11 11 C 1.53778 * 106.37898 * 211.30578 * 10 9 7
12 12 H 1.09000 * 111.70757 * 219.69833 * 11 10 9
13 13 C 1.54319 * 109.79574 * 95.21973 * 11 10 9
14 14 C 1.55050 * 103.93821 * 221.68965 * 13 11 10
15 15 C 1.55053 * 102.10916 * 40.05819 * 14 13 11
16 16 C 1.54320 * 103.93618 * 319.94341 * 15 14 13
17 17 N 1.46508 * 111.69296 * 262.79035 * 16 15 14
18 18 C 1.34774 * 119.99807 * 298.88403 * 17 16 15
19 19 O 1.21279 * 120.00510 * 359.97438 * 18 17 16
20 20 C 1.50704 * 119.99882 * 179.97438 * 18 17 16
21 21 H 1.09002 * 109.47357 * 299.99691 * 20 18 17
22 22 C 1.53112 * 109.47542 * 179.97438 * 20 18 17
23 23 C 1.53362 * 109.53085 * 170.00239 * 22 20 18
24 24 C 1.50865 * 108.41046 * 49.98696 * 23 22 20
25 25 N 1.33572 * 128.03360 * 163.26721 * 24 23 22
26 26 C 1.30749 * 109.15081 * 180.08578 * 25 24 23
27 27 N 1.35317 * 108.76292 * 359.72367 * 26 25 24
28 28 H 0.97009 * 126.49750 * 180.26777 * 27 26 25
29 29 C 1.35024 * 123.98800 * 343.29840 * 24 23 22
30 30 C 1.50649 * 124.45581 * 359.89814 * 29 24 23
31 31 C 1.47208 * 126.70251 * 14.08548 * 9 7 2
32 32 H 0.97000 * 120.00347 * 359.97438 * 1 2 3
33 33 H 1.08993 * 110.07391 * 92.07231 * 10 9 7
34 34 H 1.09005 * 110.06989 * 330.53135 * 10 9 7
35 35 H 1.08999 * 110.53616 * 340.30325 * 13 11 10
36 36 H 1.08999 * 110.53542 * 103.07497 * 13 11 10
37 37 H 1.09003 * 110.90733 * 158.26023 * 14 13 11
38 38 H 1.09001 * 110.90339 * 281.82519 * 14 13 11
39 39 H 1.09005 * 110.53759 * 201.32956 * 15 14 13
40 40 H 1.09001 * 110.53566 * 78.55506 * 15 14 13
41 41 H 0.96993 * 119.99500 * 118.88220 * 17 16 15
42 42 H 1.08997 * 109.46698 * 290.02738 * 22 20 18
43 43 H 1.09007 * 109.46046 * 49.99265 * 22 20 18
44 44 H 1.09001 * 109.67100 * 169.71286 * 23 22 20
45 45 H 1.08994 * 109.67433 * 290.25206 * 23 22 20
46 46 H 1.08001 * 125.62180 * 179.97438 * 26 25 24
47 47 H 1.09004 * 109.68460 * 103.26160 * 30 29 24
48 48 H 1.09003 * 109.68856 * 223.82242 * 30 29 24
49 49 H 1.08999 * 110.07530 * 29.46915 * 31 9 7
50 50 H 1.09001 * 110.07691 * 267.92647 * 31 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3924 2.1072 -1.3948
5 1 1.5042 2.6200 0.8027
6 1 3.5963 1.4121 0.5921
7 6 2.0103 -1.2022 -0.0005
8 1 3.0804 -1.2079 0.1450
9 7 1.3381 -2.3808 -0.1855
10 6 1.8531 -3.7365 0.0677
11 6 1.1648 -4.6593 -0.9518
12 1 0.8897 -5.6161 -0.5081
13 6 2.0721 -4.8428 -2.1865
14 6 1.0924 -4.7603 -3.3855
15 6 0.1373 -3.6202 -2.9472
16 6 -0.0777 -3.8741 -1.4403
17 7 -1.3195 -4.6090 -1.1867
18 6 -2.5036 -4.0758 -1.5472
19 8 -2.5413 -2.9875 -2.0811
20 6 -3.7810 -4.8320 -1.2868
21 1 -3.7514 -5.7868 -1.8118
22 6 -4.9718 -4.0103 -1.7879
23 6 -6.2397 -4.8724 -1.7550
24 6 -6.3447 -5.5138 -0.3936
25 7 -7.4155 -6.0803 0.1689
26 6 -7.0944 -6.5175 1.3586
27 7 -5.7892 -6.2420 1.5859
28 1 -5.2850 -6.4570 2.3862
29 6 -5.3187 -5.6036 0.4796
30 6 -3.9299 -5.0810 0.2195
31 6 -0.0405 -2.5397 -0.6768
32 1 -0.4851 0.8400 0.0004
33 1 1.6041 -4.0479 1.0821
34 1 2.9333 -3.7592 -0.0767
35 1 2.8107 -4.0431 -2.2406
36 1 2.5622 -5.8160 -2.1596
37 1 1.6202 -4.4949 -4.3015
38 1 0.5493 -5.6972 -3.5092
39 1 -0.8087 -3.6859 -3.4848
40 1 0.6031 -2.6480 -3.1084
41 1 -1.2893 -5.4792 -0.7594
42 1 -5.1079 -3.1396 -1.1464
43 1 -4.7822 -3.6821 -2.8099
44 1 -7.1138 -4.2463 -1.9342
45 1 -6.1779 -5.6452 -2.5211
46 1 -7.7600 -7.0197 2.0450
47 1 -3.7812 -4.1475 0.7623
48 1 -3.1939 -5.8165 0.5446
49 1 -0.2960 -1.7184 -1.3463
50 1 -0.7357 -2.5692 0.1622
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099111662.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:24
Heat of formation + Delta-G solvation = 35.108238 kcal
Electronic energy + Delta-G solvation = -31516.804537 eV
Core-core repulsion = 27544.510305 eV
Total energy + Delta-G solvation = -3972.294232 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-42.41416 -40.21666 -38.47277 -36.00281 -34.36682 -33.52292 -33.08793 -31.52925
-30.14722 -29.46910 -28.90694 -27.68538 -24.71463 -24.56509 -23.97789 -22.82770
-21.70560 -20.93882 -20.58293 -19.54809 -18.79246 -18.72697 -17.98069 -16.98635
-16.53216 -15.80325 -15.56715 -15.07323 -14.60851 -14.51784 -14.37509 -13.99725
-13.80516 -13.64171 -13.56403 -13.36098 -13.33572 -13.18643 -12.71720 -12.40899
-12.00609 -11.93060 -11.54458 -11.21113 -11.08074 -10.94439 -10.91699 -10.89624
-10.69281 -10.56553 -10.53000 -10.30035 -10.12684 -10.01409 -9.98051 -9.96957
-9.88305 -9.69490 -9.19563 -8.55504 -8.45631 -8.28115 -6.77875 -5.70704
-3.06812 1.87134 2.81912 2.97606 3.13898 3.41694 3.46526 3.49270
3.51979 4.29522 4.51406 4.59213 4.66838 4.77284 4.87381 5.06633
5.07783 5.08983 5.18400 5.26136 5.33390 5.41758 5.51480 5.56022
5.61697 5.65055 5.78708 5.85728 5.89226 5.94153 5.94453 6.05243
6.05435 6.08907 6.14906 6.21600 6.30225 6.34943 6.35809 6.53411
6.64080 6.65335 6.71822 6.81422 6.86051 7.11624 7.20883 7.47485
7.67388 7.85076 7.93493 7.99609 8.31777 8.69988 9.20604 9.82746
10.54027 11.41320
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012838 B = 0.003182 C = 0.002896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2180.506507 B = 8796.013733 C = 9667.819360
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C -0.002 4.002
3 Si 0.908 3.092
4 H -0.288 1.288
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.235 4.235
8 H 0.076 0.924
9 N -0.593 5.593
10 C 0.136 3.864
11 C -0.107 4.107
12 H 0.072 0.928
13 C -0.111 4.111
14 C -0.125 4.125
15 C -0.110 4.110
16 C 0.147 3.853
17 N -0.713 5.713
18 C 0.514 3.486
19 O -0.515 6.515
20 C -0.097 4.097
21 H 0.097 0.903
22 C -0.099 4.099
23 C -0.033 4.033
24 C 0.006 3.994
25 N -0.487 5.487
26 C 0.173 3.827
27 N -0.561 5.561
28 H 0.420 0.580
29 C -0.020 4.020
30 C -0.034 4.034
31 C 0.179 3.821
32 H 0.254 0.746
33 H 0.013 0.987
34 H 0.045 0.955
35 H 0.074 0.926
36 H 0.056 0.944
37 H 0.060 0.940
38 H 0.057 0.943
39 H 0.065 0.935
40 H 0.079 0.921
41 H 0.390 0.610
42 H 0.074 0.926
43 H 0.084 0.916
44 H 0.080 0.920
45 H 0.075 0.925
46 H 0.207 0.793
47 H 0.088 0.912
48 H 0.077 0.923
49 H 0.087 0.913
50 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.147 -17.226 -0.290 19.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.200 4.200
3 Si 0.739 3.261
4 H -0.215 1.215
5 H -0.218 1.218
6 H -0.206 1.206
7 C -0.363 4.363
8 H 0.093 0.907
9 N -0.317 5.317
10 C 0.009 3.991
11 C -0.127 4.127
12 H 0.090 0.910
13 C -0.148 4.148
14 C -0.162 4.162
15 C -0.149 4.149
16 C 0.061 3.939
17 N -0.364 5.364
18 C 0.298 3.702
19 O -0.389 6.389
20 C -0.119 4.119
21 H 0.115 0.885
22 C -0.138 4.138
23 C -0.072 4.072
24 C -0.124 4.124
25 N -0.206 5.206
26 C -0.110 4.110
27 N -0.163 5.163
28 H 0.257 0.743
29 C -0.137 4.137
30 C -0.073 4.073
31 C 0.052 3.948
32 H 0.064 0.936
33 H 0.030 0.970
34 H 0.063 0.937
35 H 0.092 0.908
36 H 0.075 0.925
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.084 0.916
40 H 0.098 0.902
41 H 0.223 0.777
42 H 0.093 0.907
43 H 0.103 0.897
44 H 0.099 0.901
45 H 0.093 0.907
46 H 0.223 0.777
47 H 0.106 0.894
48 H 0.096 0.904
49 H 0.105 0.895
50 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges -9.018 -16.212 -1.048 18.581
hybrid contribution 1.327 0.171 1.395 1.933
sum -7.690 -16.041 0.347 17.793
Atomic orbital electron populations
1.69958 1.04874 1.25301 1.55093 1.24894 0.95572 0.97854 1.01681
0.86168 0.78680 0.83729 0.77566 1.21525 1.21753 1.20599 1.18957
0.90730 0.82454 1.44143 0.90665 1.44413 1.12178 0.99884 1.75256
1.21363 0.96635 0.86681 0.94374 1.22818 0.95097 0.97811 0.97013
0.90973 1.22427 0.97618 1.00951 0.93832 1.22596 0.97442 0.98502
0.97682 1.22625 0.99007 0.98871 0.94351 1.22060 0.81494 0.94571
0.95804 1.46040 1.05974 1.21965 1.62422 1.20299 0.84492 0.86404
0.78986 1.90773 1.86763 1.19932 1.41410 1.21310 0.94146 1.00576
0.95906 0.88506 1.21438 0.91337 0.97705 1.03271 1.19986 0.98464
0.98014 0.90704 1.20587 0.89084 1.04624 0.98132 1.69968 1.29392
1.14717 1.06509 1.25008 0.83895 1.05414 0.96662 1.42942 1.11785
1.45360 1.16257 0.74251 1.20901 0.98188 1.05160 0.89440 1.20023
0.89999 1.01457 0.95801 1.21343 0.86026 0.91868 0.95536 0.93597
0.96971 0.93668 0.90765 0.92515 0.92135 0.92417 0.91648 0.90227
0.77687 0.90723 0.89746 0.90145 0.90678 0.77659 0.89358 0.90422
0.89492 0.96474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.28 10.84 55.49 0.60 -26.68 16
2 C 0.00 -0.06 5.39 -17.43 -0.09 -0.15 16
3 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16
4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16
8 H 0.08 2.02 7.84 -52.49 -0.41 1.60 16
9 N -0.59 -14.95 3.39 -171.14 -0.58 -15.53 16
10 C 0.14 2.74 6.60 -3.25 -0.02 2.72 16
11 C -0.11 -1.74 3.63 -88.53 -0.32 -2.06 16
12 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16
13 C -0.11 -1.63 6.25 -24.96 -0.16 -1.79 16
14 C -0.12 -1.79 6.92 -24.56 -0.17 -1.96 16
15 C -0.11 -1.99 5.53 -24.96 -0.14 -2.13 16
16 C 0.15 2.69 0.91 -129.73 -0.12 2.57 16
17 N -0.71 -10.56 5.09 -45.67 -0.23 -10.79 16
18 C 0.51 8.08 6.43 -10.98 -0.07 8.00 16
19 O -0.51 -10.53 13.79 5.56 0.08 -10.45 16
20 C -0.10 -1.14 2.51 -91.50 -0.23 -1.37 16
21 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16
22 C -0.10 -1.22 4.64 -26.49 -0.12 -1.35 16
23 C -0.03 -0.38 6.30 -27.62 -0.17 -0.55 16
24 C 0.01 0.07 6.98 -82.90 -0.58 -0.51 16
25 N -0.49 -6.27 11.25 -10.74 -0.12 -6.39 16
26 C 0.17 1.60 13.05 -89.92 -1.17 0.43 16
27 N -0.56 -4.76 6.15 -10.29 -0.06 -4.83 16
28 H 0.42 2.17 8.96 -40.82 -0.37 1.81 16
29 C -0.02 -0.23 7.08 -81.86 -0.58 -0.80 16
30 C -0.03 -0.36 5.43 -27.70 -0.15 -0.51 16
31 C 0.18 4.35 3.70 -3.25 -0.01 4.34 16
32 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16
33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16
34 H 0.04 0.87 7.63 -51.93 -0.40 0.48 16
35 H 0.07 1.23 7.61 -51.93 -0.40 0.84 16
36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
39 H 0.06 1.20 6.65 -51.93 -0.35 0.85 16
40 H 0.08 1.68 7.61 -51.93 -0.40 1.29 16
41 H 0.39 4.43 7.97 -40.82 -0.33 4.11 16
42 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16
43 H 0.08 1.07 7.77 -51.93 -0.40 0.67 16
44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
46 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16
47 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16
48 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16
49 H 0.09 2.50 6.22 -51.93 -0.32 2.17 16
50 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16
LS Contribution 384.52 15.07 5.79 5.79
Total: -1.00 -35.50 384.52 -11.76 -47.26
By element:
Atomic # 1 Polarization: 14.12 SS G_CDS: -7.95 Total: 6.17 kcal
Atomic # 6 Polarization: 2.47 SS G_CDS: -4.26 Total: -1.79 kcal
Atomic # 7 Polarization: -63.82 SS G_CDS: -0.39 Total: -64.22 kcal
Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -35.50 -11.76 -47.26 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099111662.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.370 kcal
(2) G-P(sol) polarization free energy of solvation -35.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds