Wall clock time and date at job start Wed Apr 1 2020 03:01:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86804 * 119.99736 * 2 1
4 4 H 1.48501 * 109.46996 * 274.97922 * 3 2 1
5 5 H 1.48501 * 109.47087 * 34.98446 * 3 2 1
6 6 H 1.48494 * 109.46720 * 154.98030 * 3 2 1
7 7 C 1.38813 * 119.99977 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99764 * 188.94993 * 7 2 1
9 9 N 1.36940 * 119.99972 * 8.94664 * 7 2 1
10 10 C 1.47214 * 126.70049 * 194.06017 * 9 7 2
11 11 C 1.53778 * 106.37898 * 211.30578 * 10 9 7
12 12 H 1.09000 * 111.70757 * 219.69833 * 11 10 9
13 13 C 1.54319 * 109.79574 * 95.21973 * 11 10 9
14 14 C 1.55050 * 103.93821 * 221.68965 * 13 11 10
15 15 C 1.55053 * 102.10916 * 40.05819 * 14 13 11
16 16 C 1.54320 * 103.93618 * 319.94341 * 15 14 13
17 17 N 1.46508 * 111.69296 * 262.79035 * 16 15 14
18 18 C 1.34774 * 119.99807 * 298.88403 * 17 16 15
19 19 O 1.21279 * 120.00510 * 359.97438 * 18 17 16
20 20 C 1.50704 * 119.99882 * 179.97438 * 18 17 16
21 21 H 1.09002 * 109.47357 * 299.99691 * 20 18 17
22 22 C 1.53112 * 109.47542 * 179.97438 * 20 18 17
23 23 C 1.53362 * 109.53085 * 170.00239 * 22 20 18
24 24 C 1.50865 * 108.41046 * 49.98696 * 23 22 20
25 25 N 1.33572 * 128.03360 * 163.26721 * 24 23 22
26 26 C 1.30749 * 109.15081 * 180.08578 * 25 24 23
27 27 N 1.35317 * 108.76292 * 359.72367 * 26 25 24
28 28 H 0.97009 * 126.49750 * 180.26777 * 27 26 25
29 29 C 1.35024 * 123.98800 * 343.29840 * 24 23 22
30 30 C 1.50649 * 124.45581 * 359.89814 * 29 24 23
31 31 C 1.47208 * 126.70251 * 14.08548 * 9 7 2
32 32 H 0.97000 * 120.00347 * 359.97438 * 1 2 3
33 33 H 1.08993 * 110.07391 * 92.07231 * 10 9 7
34 34 H 1.09005 * 110.06989 * 330.53135 * 10 9 7
35 35 H 1.08999 * 110.53616 * 340.30325 * 13 11 10
36 36 H 1.08999 * 110.53542 * 103.07497 * 13 11 10
37 37 H 1.09003 * 110.90733 * 158.26023 * 14 13 11
38 38 H 1.09001 * 110.90339 * 281.82519 * 14 13 11
39 39 H 1.09005 * 110.53759 * 201.32956 * 15 14 13
40 40 H 1.09001 * 110.53566 * 78.55506 * 15 14 13
41 41 H 0.96993 * 119.99500 * 118.88220 * 17 16 15
42 42 H 1.08997 * 109.46698 * 290.02738 * 22 20 18
43 43 H 1.09007 * 109.46046 * 49.99265 * 22 20 18
44 44 H 1.09001 * 109.67100 * 169.71286 * 23 22 20
45 45 H 1.08994 * 109.67433 * 290.25206 * 23 22 20
46 46 H 1.08001 * 125.62180 * 179.97438 * 26 25 24
47 47 H 1.09004 * 109.68460 * 103.26160 * 30 29 24
48 48 H 1.09003 * 109.68856 * 223.82242 * 30 29 24
49 49 H 1.08999 * 110.07530 * 29.46915 * 31 9 7
50 50 H 1.09001 * 110.07691 * 267.92647 * 31 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3924 2.1072 -1.3948
5 1 1.5042 2.6200 0.8027
6 1 3.5963 1.4121 0.5921
7 6 2.0103 -1.2022 -0.0005
8 1 3.0804 -1.2079 0.1450
9 7 1.3381 -2.3808 -0.1855
10 6 1.8531 -3.7365 0.0677
11 6 1.1648 -4.6593 -0.9518
12 1 0.8897 -5.6161 -0.5081
13 6 2.0721 -4.8428 -2.1865
14 6 1.0924 -4.7603 -3.3855
15 6 0.1373 -3.6202 -2.9472
16 6 -0.0777 -3.8741 -1.4403
17 7 -1.3195 -4.6090 -1.1867
18 6 -2.5036 -4.0758 -1.5472
19 8 -2.5413 -2.9875 -2.0811
20 6 -3.7810 -4.8320 -1.2868
21 1 -3.7514 -5.7868 -1.8118
22 6 -4.9718 -4.0103 -1.7879
23 6 -6.2397 -4.8724 -1.7550
24 6 -6.3447 -5.5138 -0.3936
25 7 -7.4155 -6.0803 0.1689
26 6 -7.0944 -6.5175 1.3586
27 7 -5.7892 -6.2420 1.5859
28 1 -5.2850 -6.4570 2.3862
29 6 -5.3187 -5.6036 0.4796
30 6 -3.9299 -5.0810 0.2195
31 6 -0.0405 -2.5397 -0.6768
32 1 -0.4851 0.8400 0.0004
33 1 1.6041 -4.0479 1.0821
34 1 2.9333 -3.7592 -0.0767
35 1 2.8107 -4.0431 -2.2406
36 1 2.5622 -5.8160 -2.1596
37 1 1.6202 -4.4949 -4.3015
38 1 0.5493 -5.6972 -3.5092
39 1 -0.8087 -3.6859 -3.4848
40 1 0.6031 -2.6480 -3.1084
41 1 -1.2893 -5.4792 -0.7594
42 1 -5.1079 -3.1396 -1.1464
43 1 -4.7822 -3.6821 -2.8099
44 1 -7.1138 -4.2463 -1.9342
45 1 -6.1779 -5.6452 -2.5211
46 1 -7.7600 -7.0197 2.0450
47 1 -3.7812 -4.1475 0.7623
48 1 -3.1939 -5.8165 0.5446
49 1 -0.2960 -1.7184 -1.3463
50 1 -0.7357 -2.5692 0.1622
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099111662.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:23
Heat of formation + Delta-G solvation = 11.087590 kcal
Electronic energy + Delta-G solvation = -31517.846151 eV
Core-core repulsion = 27544.510305 eV
Total energy + Delta-G solvation = -3973.335845 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-43.20854 -41.61739 -39.84020 -37.09030 -36.17185 -34.75786 -34.02129 -33.48213
-31.22997 -30.60237 -30.19761 -29.30001 -26.31682 -26.28786 -25.00364 -23.90597
-22.53192 -22.36549 -22.10794 -20.71880 -20.24498 -19.76372 -18.85941 -18.76597
-17.87585 -17.32811 -16.51181 -16.45961 -16.15870 -15.76962 -15.51525 -15.36040
-15.04733 -14.95540 -14.84830 -14.71245 -14.59432 -14.27323 -14.19078 -13.66110
-13.60127 -13.00149 -12.92087 -12.85837 -12.63968 -12.57089 -12.35138 -12.10645
-12.03468 -11.97143 -11.92748 -11.89740 -11.64602 -11.59038 -11.52856 -11.41233
-10.87025 -10.77951 -10.68099 -10.55713 -9.91808 -9.10431 -8.85668 -7.88299
-5.25925 1.09398 1.41650 1.44505 1.53334 1.72298 2.14919 2.21701
2.32105 2.48489 3.30112 3.44243 3.50564 3.66439 3.76824 3.79337
3.82504 3.90976 3.94074 4.17185 4.23730 4.33272 4.43763 4.45663
4.46748 4.53743 4.55433 4.63553 4.66348 4.72398 4.77886 4.81225
4.93980 5.02129 5.04698 5.07116 5.10885 5.13421 5.14829 5.28937
5.32139 5.33162 5.35716 5.44143 5.47891 5.59031 5.72578 5.79918
5.90055 6.22095 6.60780 6.74174 7.04253 7.15842 7.46999 7.75664
8.45548 9.22553
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012838 B = 0.003182 C = 0.002896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2180.506507 B = 8796.013733 C = 9667.819360
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C -0.066 4.066
3 Si 0.974 3.026
4 H -0.290 1.290
5 H -0.297 1.297
6 H -0.260 1.260
7 C -0.240 4.240
8 H 0.084 0.916
9 N -0.617 5.617
10 C 0.128 3.872
11 C -0.093 4.093
12 H 0.119 0.881
13 C -0.105 4.105
14 C -0.110 4.110
15 C -0.110 4.110
16 C 0.157 3.843
17 N -0.698 5.698
18 C 0.511 3.489
19 O -0.570 6.570
20 C -0.083 4.083
21 H 0.131 0.869
22 C -0.094 4.094
23 C -0.026 4.026
24 C -0.020 4.020
25 N -0.530 5.530
26 C 0.187 3.813
27 N -0.549 5.549
28 H 0.437 0.563
29 C -0.028 4.028
30 C -0.027 4.027
31 C 0.197 3.803
32 H 0.243 0.757
33 H 0.016 0.984
34 H 0.055 0.945
35 H 0.049 0.951
36 H 0.099 0.901
37 H 0.070 0.930
38 H 0.089 0.911
39 H 0.056 0.944
40 H 0.032 0.968
41 H 0.413 0.587
42 H 0.045 0.955
43 H 0.075 0.925
44 H 0.075 0.925
45 H 0.090 0.910
46 H 0.247 0.753
47 H 0.062 0.938
48 H 0.109 0.891
49 H 0.030 0.970
50 H -0.025 1.025
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.072 -21.531 0.266 22.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.259 4.259
3 Si 0.802 3.198
4 H -0.217 1.217
5 H -0.224 1.224
6 H -0.184 1.184
7 C -0.369 4.369
8 H 0.102 0.898
9 N -0.342 5.342
10 C 0.003 3.997
11 C -0.113 4.113
12 H 0.137 0.863
13 C -0.143 4.143
14 C -0.147 4.147
15 C -0.148 4.148
16 C 0.069 3.931
17 N -0.350 5.350
18 C 0.298 3.702
19 O -0.448 6.448
20 C -0.105 4.105
21 H 0.148 0.852
22 C -0.133 4.133
23 C -0.064 4.064
24 C -0.149 4.149
25 N -0.250 5.250
26 C -0.097 4.097
27 N -0.153 5.153
28 H 0.278 0.722
29 C -0.145 4.145
30 C -0.065 4.065
31 C 0.070 3.930
32 H 0.053 0.947
33 H 0.034 0.966
34 H 0.073 0.927
35 H 0.068 0.932
36 H 0.118 0.882
37 H 0.089 0.911
38 H 0.108 0.892
39 H 0.075 0.925
40 H 0.051 0.949
41 H 0.251 0.749
42 H 0.064 0.936
43 H 0.093 0.907
44 H 0.093 0.907
45 H 0.108 0.892
46 H 0.263 0.737
47 H 0.081 0.919
48 H 0.127 0.873
49 H 0.048 0.952
50 H -0.007 1.007
Dipole moment (debyes) X Y Z Total
from point charges -7.893 -20.598 -0.452 22.063
hybrid contribution 0.952 1.525 1.294 2.215
sum -6.941 -19.073 0.842 20.314
Atomic orbital electron populations
1.70211 1.06622 1.25181 1.57216 1.25757 0.96320 1.01415 1.02431
0.85123 0.78142 0.79309 0.77186 1.21715 1.22370 1.18440 1.19396
0.91367 0.83777 1.42348 0.89815 1.44703 1.12457 1.01445 1.75547
1.21639 0.97587 0.84695 0.95774 1.22828 0.93424 0.98274 0.96782
0.86299 1.22413 0.96855 1.02392 0.92634 1.22557 0.96434 0.97787
0.97948 1.22495 0.99416 0.98523 0.94397 1.21674 0.84077 0.92322
0.95016 1.45811 1.04618 1.22510 1.62097 1.21052 0.85807 0.85801
0.77567 1.90769 1.87574 1.22592 1.43899 1.21242 0.91046 1.00914
0.97298 0.85160 1.21337 0.92659 0.97230 1.02066 1.19896 0.97254
0.97970 0.91288 1.20777 0.89783 1.05505 0.98843 1.69943 1.30116
1.16485 1.08411 1.25805 0.84309 1.03530 0.96016 1.42903 1.11753
1.44425 1.16193 0.72239 1.20797 0.97816 1.05691 0.90184 1.19926
0.91085 1.01153 0.94364 1.20943 0.85010 0.93749 0.93308 0.94748
0.96588 0.92654 0.93204 0.88208 0.91143 0.89207 0.92508 0.94864
0.74909 0.93575 0.90676 0.90683 0.89165 0.73710 0.91923 0.87278
0.95183 1.00715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.84 10.84 21.65 0.23 -60.61 16
2 C -0.07 -3.89 5.39 84.86 0.46 -3.44 16
3 Si 0.97 47.55 29.56 68.60 2.03 49.58 16
4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16
5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16
6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
7 C -0.24 -13.73 10.28 84.03 0.86 -12.87 16
8 H 0.08 4.53 7.84 -2.91 -0.02 4.50 16
9 N -0.62 -32.10 3.39 -695.36 -2.35 -34.45 16
10 C 0.13 4.99 6.60 86.51 0.57 5.57 16
11 C -0.09 -2.74 3.63 -9.44 -0.03 -2.78 16
12 H 0.12 2.47 7.71 -2.39 -0.02 2.45 16
13 C -0.11 -2.70 6.25 31.74 0.20 -2.50 16
14 C -0.11 -2.81 6.92 32.00 0.22 -2.59 16
15 C -0.11 -4.02 5.53 31.74 0.18 -3.84 16
16 C 0.16 5.70 0.91 4.96 0.00 5.70 16
17 N -0.70 -19.78 5.09 -416.81 -2.12 -21.90 16
18 C 0.51 16.33 6.43 87.66 0.56 16.89 16
19 O -0.57 -25.11 13.79 -3.03 -0.04 -25.15 16
20 C -0.08 -1.89 2.51 -11.37 -0.03 -1.92 16
21 H 0.13 2.16 8.12 -2.39 -0.02 2.14 16
22 C -0.09 -2.43 4.64 30.75 0.14 -2.29 16
23 C -0.03 -0.58 6.30 30.02 0.19 -0.39 16
24 C -0.02 -0.48 6.98 41.61 0.29 -0.19 16
25 N -0.53 -12.88 11.25 -187.90 -2.11 -14.99 16
26 C 0.19 2.95 13.05 180.10 2.35 5.30 16
27 N -0.55 -7.85 6.15 -186.45 -1.15 -9.00 16
28 H 0.44 3.12 8.96 -92.70 -0.83 2.29 16
29 C -0.03 -0.56 7.08 41.14 0.29 -0.27 16
30 C -0.03 -0.53 5.43 29.97 0.16 -0.37 16
31 C 0.20 10.17 3.70 86.51 0.32 10.49 16
32 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16
33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.06 2.03 7.63 -2.38 -0.02 2.02 16
35 H 0.05 1.54 7.61 -2.39 -0.02 1.52 16
36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
39 H 0.06 2.14 6.65 -2.38 -0.02 2.13 16
40 H 0.03 1.50 7.61 -2.39 -0.02 1.48 16
41 H 0.41 7.81 7.97 -92.71 -0.74 7.07 16
42 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16
43 H 0.07 2.05 7.77 -2.38 -0.02 2.03 16
44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
46 H 0.25 1.51 8.06 -2.91 -0.02 1.49 16
47 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16
48 H 0.11 1.47 7.90 -2.39 -0.02 1.45 16
49 H 0.03 1.87 6.22 -2.39 -0.01 1.86 16
50 H -0.03 -1.46 8.06 -2.39 -0.02 -1.48 16
Total: -1.00 -87.08 384.52 0.62 -86.46
By element:
Atomic # 1 Polarization: 20.16 SS G_CDS: -0.60 Total: 19.56 kcal
Atomic # 6 Polarization: 3.77 SS G_CDS: 6.74 Total: 10.51 kcal
Atomic # 7 Polarization: -133.45 SS G_CDS: -7.50 Total: -140.95 kcal
Atomic # 8 Polarization: -25.11 SS G_CDS: -0.04 Total: -25.15 kcal
Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal
Total: -87.08 0.62 -86.46 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099111662.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.547 kcal
(2) G-P(sol) polarization free energy of solvation -87.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds