Wall clock time and date at job start Wed Apr 1 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 115.54890 * 2 1 4 4 C 1.53003 * 109.46839 * 34.33219 * 3 2 1 5 5 C 1.50699 * 109.46609 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00231 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99661 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99997 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.41444 * 36.02674 * 8 7 5 10 10 C 1.54758 * 110.45637 * 158.65923 * 8 7 5 11 11 C 1.53385 * 101.45201 * 94.49810 * 10 8 7 12 12 C 1.52460 * 115.84205 * 253.16504 * 11 10 8 13 13 N 1.47256 * 87.71509 * 218.48937 * 12 11 10 14 14 C 1.36945 * 135.93747 * 206.23078 * 13 12 11 15 15 H 1.07997 * 119.99756 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47261 * 88.12144 * 26.48701 * 13 12 11 23 23 N 1.46040 * 106.81391 * 24.81094 * 11 10 8 24 24 C 1.37275 * 142.31946 * 163.63793 * 23 11 10 25 25 C 1.34516 * 106.92783 * 180.10704 * 24 23 11 26 26 N 1.33979 * 108.05006 * 359.96898 * 25 24 23 27 27 C 1.30851 * 109.35721 * 359.97438 * 26 25 24 28 28 C 1.52993 * 117.52243 * 145.70230 * 2 1 3 29 29 C 1.53001 * 60.00302 * 107.48186 * 28 2 1 30 30 H 1.08997 * 109.47500 * 85.58201 * 1 2 3 31 31 H 1.09003 * 109.46732 * 205.58447 * 1 2 3 32 32 H 1.09004 * 109.47464 * 325.57996 * 1 2 3 33 33 H 1.08996 * 109.46771 * 274.33360 * 3 2 1 34 34 H 1.08998 * 109.46989 * 154.32830 * 3 2 1 35 35 H 1.08995 * 109.46965 * 60.00072 * 4 3 2 36 36 H 1.09001 * 109.46598 * 299.99902 * 4 3 2 37 37 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 38 38 H 1.09006 * 111.03061 * 336.45432 * 10 8 7 39 39 H 1.08993 * 111.02131 * 212.54274 * 10 8 7 40 40 H 1.08996 * 113.50872 * 103.77887 * 12 11 10 41 41 H 1.08999 * 113.57091 * 333.20938 * 12 11 10 42 42 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 43 43 H 1.09000 * 113.50846 * 88.22053 * 22 13 12 44 44 H 1.08995 * 113.50823 * 218.79401 * 22 13 12 45 45 H 1.08000 * 126.53112 * 0.06563 * 24 23 11 46 46 H 1.07991 * 125.97628 * 179.97438 * 25 24 23 47 47 H 1.09003 * 117.50426 * 214.97047 * 28 2 1 48 48 H 1.09004 * 117.49927 * 359.97438 * 28 2 1 49 49 H 1.09001 * 117.49761 * 252.51356 * 29 28 2 50 50 H 1.09000 * 117.49549 * 107.48797 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.3350 2.3543 0.8136 5 6 1.9847 3.7141 0.8130 6 8 3.0287 3.8871 0.2207 7 7 1.4053 4.7379 1.4708 8 6 2.0365 6.0600 1.4699 9 1 2.5100 6.2545 0.5075 10 6 0.9946 7.1570 1.7954 11 6 1.1778 7.3110 3.3104 12 6 0.0646 6.7323 4.1766 13 7 0.2280 7.8977 5.0619 14 6 0.0022 8.1674 6.3854 15 1 -0.3949 7.3997 7.0328 16 6 0.2849 9.4272 6.8949 17 7 0.7695 10.3628 6.1059 18 14 -0.0237 9.7954 8.7001 19 1 0.3579 11.2008 8.9909 20 1 -1.4635 9.5994 9.0062 21 1 0.7899 8.8786 9.5384 22 6 0.7341 8.6481 3.9003 23 7 2.5370 6.8745 3.6182 24 6 3.5003 6.9278 4.5947 25 6 4.5663 6.2511 4.1307 26 7 4.2678 5.7950 2.9068 27 6 3.0525 6.1631 2.5912 28 6 2.2369 -1.1209 0.7645 29 6 2.2364 -1.1207 -0.7655 30 1 -0.3634 0.0792 -1.0246 31 1 -0.3633 -0.9269 0.4438 32 1 -0.3634 0.8477 0.5809 33 1 2.2764 1.7417 -1.0247 34 1 3.1822 1.3088 0.4452 35 1 1.2484 1.9930 1.8383 36 1 0.3427 2.4259 0.3684 37 1 0.5704 4.5994 1.9449 38 1 -0.0144 6.8217 1.5554 39 1 1.2300 8.0861 1.2764 40 1 0.3288 5.7865 4.6496 41 1 -0.9035 6.6982 3.6769 42 1 0.9666 11.2433 6.4620 43 1 -0.0504 9.1386 3.3241 44 1 1.5619 9.3152 4.1407 45 1 3.4182 7.4198 5.5526 46 1 5.4994 6.1015 4.6533 47 1 3.1721 -0.8750 1.2676 48 1 1.6120 -1.8585 1.2682 49 1 1.6112 -1.8583 -1.2686 50 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101649981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:14 Heat of formation + Delta-G solvation = 122.457787 kcal Electronic energy + Delta-G solvation = -30506.089713 eV Core-core repulsion = 26537.583242 eV Total energy + Delta-G solvation = -3968.506471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21621 -39.77287 -38.65364 -38.33918 -35.61491 -33.25315 -32.54807 -31.76284 -30.50787 -28.53729 -28.32171 -27.37213 -25.45946 -25.14103 -24.00872 -22.66232 -21.83673 -21.33602 -20.60894 -19.86204 -18.96836 -18.68340 -17.25304 -16.97230 -16.55550 -15.79830 -15.49789 -15.38729 -14.89038 -14.65896 -14.49464 -14.34466 -14.02757 -13.82878 -13.58254 -13.44027 -13.33279 -13.13479 -12.85323 -12.52335 -12.43513 -12.25780 -12.23392 -11.99048 -11.74000 -11.67573 -11.40027 -11.35877 -11.18625 -10.97872 -10.76936 -10.36226 -10.27378 -10.12819 -9.83540 -9.78554 -9.73313 -9.46485 -9.22756 -9.05295 -8.87870 -7.90892 -7.17501 -5.98257 -3.33281 2.41351 2.70108 3.09674 3.25029 3.28140 3.32295 3.33624 3.49370 3.73381 4.08725 4.26901 4.39926 4.45711 4.52523 4.64910 4.68070 4.69635 4.84504 4.97489 5.01614 5.05526 5.12065 5.31854 5.36933 5.40402 5.47124 5.48774 5.53193 5.59201 5.66244 5.73460 5.77879 5.78425 5.80303 5.85982 5.89999 5.98275 5.99231 6.08051 6.15346 6.18834 6.22497 6.40940 6.70951 6.87821 6.97197 7.23145 7.33188 7.45582 7.64619 7.73246 8.26195 8.62495 8.80452 9.47663 10.32881 11.18661 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.002483 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.011362 B =11273.222798 C =11729.348270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C -0.065 4.065 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.525 6.525 7 N -0.720 5.720 8 C 0.232 3.768 9 H 0.112 0.888 10 C -0.117 4.117 11 C 0.093 3.907 12 C 0.119 3.881 13 N -0.602 5.602 14 C -0.226 4.226 15 H 0.082 0.918 16 C -0.002 4.002 17 N -0.918 5.918 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.160 3.840 23 N -0.426 5.426 24 C 0.008 3.992 25 C -0.050 4.050 26 N -0.466 5.466 27 C 0.152 3.848 28 C -0.177 4.177 29 C -0.176 4.176 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.257 0.743 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.171 0.829 46 H 0.168 0.832 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -15.993 -12.694 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.400 6.400 7 N -0.373 5.373 8 C 0.125 3.875 9 H 0.130 0.870 10 C -0.156 4.156 11 C 0.007 3.993 12 C -0.008 4.008 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.100 0.900 16 C -0.199 4.199 17 N -0.564 5.564 18 Si 0.745 3.255 19 H -0.214 1.214 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.033 3.967 23 N -0.107 5.107 24 C -0.127 4.127 25 C -0.198 4.198 26 N -0.185 5.185 27 C -0.111 4.111 28 C -0.214 4.214 29 C -0.213 4.213 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.236 0.764 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.189 0.811 46 H 0.186 0.814 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.167 -15.972 -13.144 20.718 hybrid contribution -1.089 0.762 2.114 2.497 sum -2.256 -15.210 -11.030 18.923 Atomic orbital electron populations 1.21489 0.92120 1.02302 1.02038 1.21543 0.94802 0.91154 1.05394 1.20843 0.98181 0.90482 1.00744 1.21758 1.00791 0.92138 1.03159 1.20747 0.84953 0.86096 0.78166 1.90739 1.22253 1.83856 1.43103 1.46042 1.26980 1.09606 1.54685 1.19673 0.89187 0.82800 0.95878 0.87036 1.22737 0.99782 0.99056 0.94047 1.22516 0.80993 1.02816 0.92990 1.22645 0.93943 0.93537 0.90695 1.45600 1.75456 1.08126 1.03613 1.18838 1.38210 0.96754 0.81450 0.89991 1.24806 1.01004 0.95706 0.98397 1.69785 1.48420 1.03789 1.34390 0.86154 0.78077 0.77350 0.83914 1.21381 1.20992 1.20886 1.22313 0.97614 0.90668 0.86089 1.45671 1.11727 1.39209 1.14142 1.22515 0.88273 1.06025 0.95854 1.22186 0.99626 1.04521 0.93470 1.69780 1.11394 1.23162 1.14163 1.24436 0.92731 1.00694 0.93229 1.23184 1.02583 1.01224 0.94370 1.23021 1.02552 1.01233 0.94506 0.92196 0.92578 0.91326 0.90774 0.90861 0.88817 0.88484 0.76426 0.87658 0.87775 0.93560 0.92950 0.93260 0.93492 0.90072 0.81138 0.81433 0.88752 0.88983 0.88958 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.49 37.15 0.35 -0.45 16 2 C -0.13 -1.03 2.47 -154.51 -0.38 -1.41 16 3 C -0.06 -0.62 4.69 -26.73 -0.13 -0.75 16 4 C -0.14 -1.23 4.71 -27.88 -0.13 -1.37 16 5 C 0.51 6.53 7.82 -10.98 -0.09 6.45 16 6 O -0.52 -8.89 15.69 5.56 0.09 -8.80 16 7 N -0.72 -8.42 5.13 -53.57 -0.27 -8.69 16 8 C 0.23 3.23 3.23 -67.68 -0.22 3.01 16 9 H 0.11 1.60 7.66 -51.93 -0.40 1.20 16 10 C -0.12 -1.43 6.15 -25.61 -0.16 -1.59 16 11 C 0.09 1.58 1.64 -133.40 -0.22 1.36 16 12 C 0.12 2.13 8.18 -7.89 -0.06 2.06 16 13 N -0.60 -14.04 3.79 -184.69 -0.70 -14.74 16 14 C -0.23 -5.91 10.74 -15.06 -0.16 -6.07 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 17 N -0.92 -25.69 11.51 55.49 0.64 -25.05 16 18 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.16 3.36 6.94 -7.76 -0.05 3.31 16 23 N -0.43 -7.98 3.42 -100.93 -0.35 -8.33 16 24 C 0.01 0.15 12.03 -16.43 -0.20 -0.04 16 25 C -0.05 -0.93 11.86 -17.93 -0.21 -1.14 16 26 N -0.47 -9.38 11.25 -10.49 -0.12 -9.50 16 27 C 0.15 2.77 8.22 -154.55 -1.27 1.50 16 28 C -0.18 -1.39 9.82 -26.73 -0.26 -1.65 16 29 C -0.18 -1.34 9.97 -26.73 -0.27 -1.61 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 32 H 0.07 0.40 5.59 -51.93 -0.29 0.11 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.07 0.83 7.86 -51.93 -0.41 0.43 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.63 6.45 -51.93 -0.33 0.30 16 37 H 0.40 3.68 8.57 -40.82 -0.35 3.33 16 38 H 0.11 0.97 7.75 -51.93 -0.40 0.56 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.08 2.00 7.15 -51.93 -0.37 1.63 16 45 H 0.17 3.45 8.06 -52.49 -0.42 3.03 16 46 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 47 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 48 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 49 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -33.77 405.47 -11.16 -44.94 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.99 Total: 6.47 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -3.55 Total: 1.47 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.80 Total: -66.31 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.77 -11.16 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.393 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds