Wall clock time and date at job start Wed Apr 1 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 115.54890 * 2 1 4 4 C 1.53003 * 109.46839 * 34.33219 * 3 2 1 5 5 C 1.50699 * 109.46609 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00231 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99661 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99997 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.41444 * 36.02674 * 8 7 5 10 10 C 1.54758 * 110.45637 * 158.65923 * 8 7 5 11 11 C 1.53385 * 101.45201 * 94.49810 * 10 8 7 12 12 C 1.52460 * 115.84205 * 253.16504 * 11 10 8 13 13 N 1.47256 * 87.71509 * 218.48937 * 12 11 10 14 14 C 1.36945 * 135.93747 * 206.23078 * 13 12 11 15 15 H 1.07997 * 119.99756 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47261 * 88.12144 * 26.48701 * 13 12 11 23 23 N 1.46040 * 106.81391 * 24.81094 * 11 10 8 24 24 C 1.37275 * 142.31946 * 163.63793 * 23 11 10 25 25 C 1.34516 * 106.92783 * 180.10704 * 24 23 11 26 26 N 1.33979 * 108.05006 * 359.96898 * 25 24 23 27 27 C 1.30851 * 109.35721 * 359.97438 * 26 25 24 28 28 C 1.52993 * 117.52243 * 145.70230 * 2 1 3 29 29 C 1.53001 * 60.00302 * 107.48186 * 28 2 1 30 30 H 1.08997 * 109.47500 * 85.58201 * 1 2 3 31 31 H 1.09003 * 109.46732 * 205.58447 * 1 2 3 32 32 H 1.09004 * 109.47464 * 325.57996 * 1 2 3 33 33 H 1.08996 * 109.46771 * 274.33360 * 3 2 1 34 34 H 1.08998 * 109.46989 * 154.32830 * 3 2 1 35 35 H 1.08995 * 109.46965 * 60.00072 * 4 3 2 36 36 H 1.09001 * 109.46598 * 299.99902 * 4 3 2 37 37 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 38 38 H 1.09006 * 111.03061 * 336.45432 * 10 8 7 39 39 H 1.08993 * 111.02131 * 212.54274 * 10 8 7 40 40 H 1.08996 * 113.50872 * 103.77887 * 12 11 10 41 41 H 1.08999 * 113.57091 * 333.20938 * 12 11 10 42 42 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 43 43 H 1.09000 * 113.50846 * 88.22053 * 22 13 12 44 44 H 1.08995 * 113.50823 * 218.79401 * 22 13 12 45 45 H 1.08000 * 126.53112 * 0.06563 * 24 23 11 46 46 H 1.07991 * 125.97628 * 179.97438 * 25 24 23 47 47 H 1.09003 * 117.50426 * 214.97047 * 28 2 1 48 48 H 1.09004 * 117.49927 * 359.97438 * 28 2 1 49 49 H 1.09001 * 117.49761 * 252.51356 * 29 28 2 50 50 H 1.09000 * 117.49549 * 107.48797 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.3350 2.3543 0.8136 5 6 1.9847 3.7141 0.8130 6 8 3.0287 3.8871 0.2207 7 7 1.4053 4.7379 1.4708 8 6 2.0365 6.0600 1.4699 9 1 2.5100 6.2545 0.5075 10 6 0.9946 7.1570 1.7954 11 6 1.1778 7.3110 3.3104 12 6 0.0646 6.7323 4.1766 13 7 0.2280 7.8977 5.0619 14 6 0.0022 8.1674 6.3854 15 1 -0.3949 7.3997 7.0328 16 6 0.2849 9.4272 6.8949 17 7 0.7695 10.3628 6.1059 18 14 -0.0237 9.7954 8.7001 19 1 0.3579 11.2008 8.9909 20 1 -1.4635 9.5994 9.0062 21 1 0.7899 8.8786 9.5384 22 6 0.7341 8.6481 3.9003 23 7 2.5370 6.8745 3.6182 24 6 3.5003 6.9278 4.5947 25 6 4.5663 6.2511 4.1307 26 7 4.2678 5.7950 2.9068 27 6 3.0525 6.1631 2.5912 28 6 2.2369 -1.1209 0.7645 29 6 2.2364 -1.1207 -0.7655 30 1 -0.3634 0.0792 -1.0246 31 1 -0.3633 -0.9269 0.4438 32 1 -0.3634 0.8477 0.5809 33 1 2.2764 1.7417 -1.0247 34 1 3.1822 1.3088 0.4452 35 1 1.2484 1.9930 1.8383 36 1 0.3427 2.4259 0.3684 37 1 0.5704 4.5994 1.9449 38 1 -0.0144 6.8217 1.5554 39 1 1.2300 8.0861 1.2764 40 1 0.3288 5.7865 4.6496 41 1 -0.9035 6.6982 3.6769 42 1 0.9666 11.2433 6.4620 43 1 -0.0504 9.1386 3.3241 44 1 1.5619 9.3152 4.1407 45 1 3.4182 7.4198 5.5526 46 1 5.4994 6.1015 4.6533 47 1 3.1721 -0.8750 1.2676 48 1 1.6120 -1.8585 1.2682 49 1 1.6112 -1.8583 -1.2686 50 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101649981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:12 Heat of formation + Delta-G solvation = 101.788816 kcal Electronic energy + Delta-G solvation = -30506.985987 eV Core-core repulsion = 26537.583242 eV Total energy + Delta-G solvation = -3969.402745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.63086 -40.76722 -40.11972 -39.07122 -36.87088 -34.75973 -33.67953 -33.18627 -31.75577 -29.91078 -29.12618 -28.82495 -26.74989 -26.54564 -25.23552 -23.29427 -23.20103 -22.89642 -21.60181 -21.22601 -20.16447 -19.59917 -18.82226 -18.14906 -17.72964 -17.13543 -16.67390 -16.38070 -16.14608 -16.00888 -15.79971 -15.57877 -15.33377 -15.07659 -14.95961 -14.68445 -14.43692 -14.13255 -13.79948 -13.75734 -13.58211 -13.24917 -13.21227 -13.07991 -13.02828 -12.96786 -12.80750 -12.39918 -12.35174 -12.03331 -11.93491 -11.87223 -11.72205 -11.51825 -11.05978 -10.96907 -10.88678 -10.82693 -10.44786 -10.40335 -10.26090 -9.38272 -9.03449 -7.98541 -5.31977 1.00956 1.42711 1.44186 1.50520 1.66921 1.84988 1.97091 2.39711 2.43853 2.86166 2.89259 3.19797 3.28552 3.30646 3.57491 3.68420 3.76242 3.80325 3.99369 4.06608 4.07933 4.24216 4.28647 4.34445 4.46333 4.49243 4.56519 4.61995 4.67864 4.72398 4.74780 4.82257 4.83232 4.86113 4.95431 5.02487 5.07004 5.08566 5.16812 5.18901 5.23424 5.30629 5.30980 5.36969 5.42064 5.50021 5.55070 5.81185 5.88761 6.20533 6.56933 6.81483 7.16452 7.32648 7.51899 8.45865 9.17906 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.002483 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.011362 B =11273.222798 C =11729.348270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.129 4.129 3 C -0.062 4.062 4 C -0.129 4.129 5 C 0.511 3.489 6 O -0.572 6.572 7 N -0.707 5.707 8 C 0.235 3.765 9 H 0.111 0.889 10 C -0.099 4.099 11 C 0.107 3.893 12 C 0.126 3.874 13 N -0.636 5.636 14 C -0.227 4.227 15 H 0.083 0.917 16 C -0.059 4.059 17 N -0.949 5.949 18 Si 0.974 3.026 19 H -0.296 1.296 20 H -0.275 1.275 21 H -0.280 1.280 22 C 0.158 3.842 23 N -0.436 5.436 24 C -0.021 4.021 25 C -0.044 4.044 26 N -0.503 5.503 27 C 0.157 3.843 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.417 0.583 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.096 0.904 42 H 0.249 0.751 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.153 0.847 46 H 0.190 0.810 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -17.820 -13.897 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.129 4.129 3 C -0.100 4.100 4 C -0.168 4.168 5 C 0.299 3.701 6 O -0.450 6.450 7 N -0.361 5.361 8 C 0.127 3.873 9 H 0.129 0.871 10 C -0.138 4.138 11 C 0.022 3.978 12 C 0.000 4.000 13 N -0.362 5.362 14 C -0.355 4.355 15 H 0.101 0.899 16 C -0.253 4.253 17 N -0.597 5.597 18 Si 0.802 3.198 19 H -0.223 1.223 20 H -0.200 1.200 21 H -0.206 1.206 22 C 0.032 3.968 23 N -0.117 5.117 24 C -0.155 4.155 25 C -0.191 4.191 26 N -0.223 5.223 27 C -0.107 4.107 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.149 0.851 37 H 0.255 0.745 38 H 0.169 0.831 39 H 0.138 0.862 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.171 0.829 46 H 0.207 0.793 47 H 0.101 0.899 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.819 -17.841 -14.340 23.206 hybrid contribution -0.213 1.265 2.454 2.770 sum -4.032 -16.576 -11.886 20.792 Atomic orbital electron populations 1.21518 0.90436 1.03158 1.02736 1.21559 0.95909 0.90029 1.05410 1.20757 0.97360 0.91895 1.00029 1.21789 1.01681 0.89326 1.04005 1.21438 0.84301 0.87291 0.77057 1.90729 1.24464 1.84652 1.45171 1.45929 1.27233 1.08587 1.54369 1.19753 0.88793 0.84469 0.94273 0.87071 1.22884 1.01701 0.99358 0.89836 1.22485 0.79991 0.99424 0.95945 1.22877 0.95893 0.91525 0.89687 1.45853 1.76005 1.10721 1.03637 1.19141 1.36400 0.96530 0.83389 0.89908 1.25525 1.01911 0.95975 1.01869 1.69962 1.50389 1.03694 1.35664 0.85225 0.78187 0.76436 0.79934 1.22266 1.20042 1.20644 1.22261 0.96512 0.91887 0.86165 1.45877 1.12373 1.39436 1.14022 1.22421 0.89567 1.07468 0.96082 1.22547 1.00086 1.03337 0.93159 1.69811 1.12846 1.24753 1.14852 1.25318 0.92509 0.98942 0.93891 1.23219 1.02418 1.01623 0.94593 1.23083 1.02536 1.01500 0.94413 0.91606 0.91962 0.90228 0.91809 0.93530 0.87584 0.85054 0.74480 0.83089 0.86237 0.93881 0.88627 0.94239 0.92302 0.94614 0.82934 0.79340 0.89866 0.87840 0.87672 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.49 71.98 0.68 -0.49 16 2 C -0.13 -1.81 2.47 -52.18 -0.13 -1.94 16 3 C -0.06 -1.13 4.69 30.60 0.14 -0.99 16 4 C -0.13 -1.91 4.71 29.85 0.14 -1.77 16 5 C 0.51 11.84 7.82 87.66 0.69 12.52 16 6 O -0.57 -18.98 15.69 -3.01 -0.05 -19.03 16 7 N -0.71 -14.13 5.13 -441.77 -2.26 -16.39 16 8 C 0.24 5.92 3.23 45.15 0.15 6.07 16 9 H 0.11 2.92 7.66 -2.39 -0.02 2.91 16 10 C -0.10 -2.02 6.15 31.32 0.19 -1.83 16 11 C 0.11 3.41 1.64 3.94 0.01 3.42 16 12 C 0.13 4.13 8.18 83.47 0.68 4.81 16 13 N -0.64 -29.23 3.79 -738.25 -2.79 -32.03 16 14 C -0.23 -11.89 10.74 84.03 0.90 -10.99 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 17 N -0.95 -54.71 11.51 21.65 0.25 -54.46 16 18 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 19 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.16 6.59 6.94 83.56 0.58 7.17 16 23 N -0.44 -16.13 3.42 -473.24 -1.62 -17.75 16 24 C -0.02 -0.85 12.03 82.99 1.00 0.15 16 25 C -0.04 -1.65 11.86 83.51 0.99 -0.66 16 26 N -0.50 -20.25 11.25 -187.09 -2.11 -22.36 16 27 C 0.16 5.56 8.22 138.30 1.14 6.70 16 28 C -0.18 -2.63 9.82 30.59 0.30 -2.33 16 29 C -0.18 -2.49 9.97 30.60 0.31 -2.18 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.54 7.90 -2.39 -0.02 0.53 16 32 H 0.08 0.58 5.59 -2.38 -0.01 0.56 16 33 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.05 1.08 7.86 -2.39 -0.02 1.06 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 1.09 6.45 -2.39 -0.02 1.07 16 37 H 0.42 5.63 8.57 -92.71 -0.79 4.84 16 38 H 0.15 1.78 7.75 -2.38 -0.02 1.76 16 39 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.10 2.43 7.98 -2.39 -0.02 2.41 16 42 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.04 1.82 7.15 -2.39 -0.02 1.80 16 45 H 0.15 6.60 8.06 -2.91 -0.02 6.58 16 46 H 0.19 5.95 8.06 -2.91 -0.02 5.93 16 47 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 48 H 0.10 1.25 8.05 -2.39 -0.02 1.23 16 49 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.54 405.47 1.83 -75.71 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.15 Total: 25.24 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.23 Total: 14.92 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -8.53 Total: -142.99 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.54 1.83 -75.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.495 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds