Wall clock time and date at job start Wed Apr 1 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99615 * 2 1 4 4 H 1.48505 * 109.47438 * 240.00307 * 3 2 1 5 5 H 1.48499 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46779 * 120.00886 * 3 2 1 7 7 C 1.38806 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00555 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00323 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47159 * 185.35901 * 10 9 7 12 12 C 1.53001 * 112.84621 * 284.22313 * 11 10 9 13 13 H 1.08998 * 109.57908 * 182.31040 * 12 11 10 14 14 C 1.53184 * 109.59051 * 62.03039 * 12 11 10 15 15 C 1.53042 * 109.34281 * 185.41831 * 14 12 11 16 16 C 1.53103 * 109.50156 * 61.34512 * 15 14 12 17 17 C 1.53191 * 109.33144 * 298.65802 * 16 15 14 18 18 N 1.46920 * 109.70468 * 302.66228 * 12 11 10 19 19 C 1.34780 * 120.63348 * 353.49593 * 18 12 11 20 20 O 1.21516 * 119.99728 * 353.78490 * 19 18 12 21 21 C 1.48136 * 120.00065 * 173.78397 * 19 18 12 22 22 C 1.40108 * 121.14556 * 234.76266 * 21 19 18 23 23 C 1.38501 * 117.82480 * 179.97438 * 22 21 19 24 24 N 1.31913 * 119.96911 * 0.02562 * 23 22 21 25 25 N 1.28283 * 122.51640 * 359.97438 * 24 23 22 26 26 C 1.31923 * 122.32321 * 359.72684 * 25 24 23 27 27 C 1.53780 * 113.61355 * 55.41777 * 11 10 9 28 28 C 1.53957 * 87.01668 * 89.22679 * 27 11 10 29 29 C 1.53777 * 113.61148 * 153.02558 * 11 10 9 30 30 H 0.97002 * 120.00188 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99580 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46990 * 65.35713 * 10 9 7 33 33 H 1.08992 * 109.46913 * 305.35930 * 10 9 7 34 34 H 1.09008 * 109.49883 * 305.38450 * 14 12 11 35 35 H 1.09001 * 109.50349 * 65.44231 * 14 12 11 36 36 H 1.08998 * 109.45951 * 181.40389 * 15 14 12 37 37 H 1.09003 * 109.45554 * 301.35794 * 15 14 12 38 38 H 1.09002 * 109.48593 * 178.70757 * 16 15 14 39 39 H 1.08992 * 109.48930 * 58.61836 * 16 15 14 40 40 H 1.09002 * 109.58624 * 294.85072 * 17 16 15 41 41 H 1.08998 * 109.70738 * 174.49666 * 17 16 15 42 42 H 1.08004 * 121.08695 * 359.95863 * 22 21 19 43 43 H 1.08004 * 120.01598 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.17125 * 180.26899 * 26 25 24 45 45 H 1.08996 * 113.61475 * 203.74836 * 27 11 10 46 46 H 1.08997 * 113.61595 * 334.65658 * 27 11 10 47 47 H 1.08994 * 113.53926 * 270.80719 * 28 27 11 48 48 H 1.09004 * 113.73947 * 139.93792 * 28 27 11 49 49 H 1.09005 * 113.61534 * 25.35171 * 29 11 10 50 50 H 1.09009 * 113.61164 * 156.24855 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0694 -4.8166 -0.1353 12 6 0.3121 -5.1054 1.1624 13 1 -0.3446 -5.9633 1.0189 14 6 -0.5209 -3.8810 1.5543 15 6 -1.1685 -4.1243 2.9194 16 6 -0.0772 -4.3248 3.9744 17 6 0.7608 -5.5543 3.6100 18 7 1.2681 -5.3918 2.2406 19 6 2.5856 -5.5029 1.9788 20 8 2.9808 -5.4787 0.8300 21 6 3.5517 -5.6545 3.0915 22 6 4.6371 -4.7800 3.2329 23 6 5.4976 -4.9846 4.2988 24 7 5.2809 -5.9779 5.1393 25 7 4.2891 -6.7821 5.0155 26 6 3.4085 -6.6710 4.0394 27 6 0.1583 -4.7091 -1.3694 28 6 1.2461 -5.4795 -2.1398 29 6 1.6760 -6.0705 -0.7867 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6110 -3.7571 0.9336 33 1 2.7549 -3.6740 -0.8386 34 1 0.1245 -3.0042 1.6090 35 1 -1.2974 -3.7150 0.8076 36 1 -1.7817 -3.2645 3.1889 37 1 -1.7943 -5.0154 2.8707 38 1 -0.5384 -4.4752 4.9505 39 1 0.5639 -3.4439 4.0063 40 1 0.1406 -6.4489 3.6661 41 1 1.5983 -5.6464 4.3014 42 1 4.7978 -3.9728 2.5335 43 1 6.3461 -4.3318 4.4412 44 1 2.5839 -7.3650 3.9708 45 1 -0.7781 -5.2580 -1.2700 46 1 0.0157 -3.6866 -1.7191 47 1 1.9983 -4.8341 -2.5931 48 1 0.8504 -6.2209 -2.8340 49 1 2.7568 -6.1456 -0.6666 50 1 1.1553 -6.9925 -0.5276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105563461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:22 Heat of formation + Delta-G solvation = 124.585093 kcal Electronic energy + Delta-G solvation = -32965.657352 eV Core-core repulsion = 28997.243127 eV Total energy + Delta-G solvation = -3968.414224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73018 -40.74941 -37.98563 -37.33099 -34.12460 -33.61450 -32.98416 -32.33201 -31.30205 -30.42206 -27.10020 -25.96856 -25.38773 -24.83707 -24.56195 -23.82910 -22.32223 -21.75570 -21.04855 -19.53324 -18.12393 -17.77229 -17.41421 -16.82347 -16.73006 -16.19997 -15.66273 -15.39026 -14.99275 -14.75382 -14.47296 -14.34096 -14.03359 -13.91714 -13.55144 -13.51359 -13.36088 -12.92296 -12.80050 -12.32510 -12.02324 -11.78523 -11.62648 -11.39496 -11.19647 -11.08544 -10.92449 -10.82009 -10.71179 -10.63522 -10.42566 -10.28399 -10.20602 -10.17373 -10.10410 -9.64848 -9.58343 -9.55802 -9.30256 -9.01774 -8.71410 -8.35878 -6.77458 -5.74064 -2.99282 0.34786 0.66506 2.54501 2.90154 3.37491 3.43113 3.48592 3.48804 3.87079 4.11056 4.28686 4.40208 4.61431 4.71964 4.74468 4.93624 4.95262 5.07763 5.09700 5.18768 5.23665 5.38493 5.40602 5.42330 5.48762 5.53261 5.59715 5.63839 5.65186 5.73530 5.89631 5.92011 6.00768 6.08250 6.13266 6.17639 6.26670 6.30589 6.36330 6.41781 6.51167 6.70614 6.78439 6.87587 6.92592 7.01288 7.12782 7.16858 7.41622 7.72969 8.29046 8.44357 8.47719 9.57577 10.19893 10.54566 11.48856 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009356 B = 0.004777 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.974652 B = 5859.784609 C = 6723.340751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.232 4.232 8 H 0.065 0.935 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.064 4.064 12 C 0.170 3.830 13 H 0.065 0.935 14 C -0.151 4.151 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.101 3.899 18 N -0.587 5.587 19 C 0.540 3.460 20 O -0.476 6.476 21 C -0.112 4.112 22 C -0.070 4.070 23 C 0.044 3.956 24 N -0.239 5.239 25 N -0.245 5.245 26 C 0.061 3.939 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.113 4.113 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.031 0.969 33 H 0.020 0.980 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.102 0.898 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -14.352 7.033 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.364 4.364 8 H 0.083 0.917 9 N -0.382 5.382 10 C 0.061 3.939 11 C -0.065 4.065 12 C 0.068 3.932 13 H 0.083 0.917 14 C -0.189 4.189 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.022 4.022 18 N -0.320 5.320 19 C 0.327 3.673 20 O -0.352 6.352 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.120 4.120 24 N -0.081 5.081 25 N -0.086 5.086 26 C -0.104 4.104 27 C -0.174 4.174 28 C -0.183 4.183 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.178 0.822 43 H 0.196 0.804 44 H 0.191 0.809 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.026 -15.050 7.771 17.058 hybrid contribution -0.475 1.863 -1.244 2.290 sum 1.550 -13.187 6.527 14.795 Atomic orbital electron populations 1.69629 1.04929 1.25501 1.58319 1.24653 0.95449 0.97337 1.03545 0.86353 0.78570 0.84039 0.77739 1.21442 1.21795 1.21543 1.19172 0.90895 0.84441 1.41893 0.91697 1.42959 1.06137 1.00329 1.88796 1.20886 0.91750 0.82854 0.98456 1.22111 0.95908 0.97411 0.91047 1.21325 0.89068 0.96973 0.85834 0.91684 1.22391 1.00351 1.00063 0.96102 1.21492 0.97112 1.01345 0.95346 1.21912 0.98214 0.98209 0.98933 1.21953 0.98617 0.98812 0.82804 1.47852 1.05603 1.69676 1.08910 1.17949 0.82316 0.79112 0.87928 1.91036 1.78913 1.46787 1.18440 1.21420 0.97428 0.97130 0.96724 1.22601 0.91770 0.98101 0.97495 1.24349 0.99631 0.96556 0.91496 1.72872 1.11637 1.00975 1.22646 1.73038 0.98969 1.18445 1.18163 1.24521 0.98834 0.96491 0.90562 1.23012 0.96320 1.01532 0.96560 1.22882 0.99138 0.99429 0.96804 1.23376 1.02475 0.95225 0.93942 0.93645 0.77855 0.95162 0.96187 0.86647 0.90847 0.91508 0.92738 0.91139 0.91016 0.91013 0.90270 0.82180 0.80416 0.80900 0.91394 0.90189 0.90472 0.92836 0.87991 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.34 9.99 -15.06 -0.15 -6.49 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -17.79 3.73 -59.91 -0.22 -18.01 16 10 C 0.19 3.82 3.94 -4.04 -0.02 3.81 16 11 C -0.06 -1.06 0.07 -153.70 -0.01 -1.07 16 12 C 0.17 2.47 2.33 -67.61 -0.16 2.31 16 13 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 14 C -0.15 -2.41 4.00 -26.61 -0.11 -2.52 16 15 C -0.12 -1.48 5.89 -26.66 -0.16 -1.63 16 16 C -0.13 -1.55 6.08 -26.58 -0.16 -1.71 16 17 C 0.10 1.05 5.63 -3.71 -0.02 1.03 16 18 N -0.59 -7.69 2.93 -166.22 -0.49 -8.18 16 19 C 0.54 7.60 5.53 -12.19 -0.07 7.53 16 20 O -0.48 -7.74 7.93 5.35 0.04 -7.70 16 21 C -0.11 -1.37 4.96 -104.58 -0.52 -1.89 16 22 C -0.07 -0.81 10.00 -38.78 -0.39 -1.20 16 23 C 0.04 0.46 11.30 -17.42 -0.20 0.26 16 24 N -0.24 -3.05 11.48 30.53 0.35 -2.69 16 25 N -0.25 -3.12 11.49 30.78 0.35 -2.76 16 26 C 0.06 0.67 8.76 -16.96 -0.15 0.52 16 27 C -0.14 -2.25 6.52 -25.83 -0.17 -2.42 16 28 C -0.15 -2.24 7.74 -25.83 -0.20 -2.44 16 29 C -0.11 -1.73 5.77 -25.92 -0.15 -1.87 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.38 9.56 4.77 -40.82 -0.19 9.37 16 32 H 0.03 0.64 4.70 -50.23 -0.24 0.40 16 33 H 0.02 0.45 7.39 -51.93 -0.38 0.07 16 34 H 0.12 2.36 5.35 -51.92 -0.28 2.09 16 35 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.77 4.61 -51.93 -0.24 0.53 16 42 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.17 1.45 7.35 -52.49 -0.39 1.06 16 45 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 46 H 0.08 1.57 7.22 -51.93 -0.37 1.19 16 47 H 0.08 1.30 7.71 -51.93 -0.40 0.90 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.70 5.53 -53.10 -0.29 1.41 16 50 H 0.06 0.81 8.09 -51.92 -0.42 0.39 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -31.08 373.49 -8.74 -39.82 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.39 Total: 11.58 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.71 Total: -8.29 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.72 Total: -58.21 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.04 Total: -7.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.08 -8.74 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105563461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.405 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds