Wall clock time and date at job start Wed Apr 1 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99615 * 2 1 4 4 H 1.48505 * 109.47438 * 240.00307 * 3 2 1 5 5 H 1.48499 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46779 * 120.00886 * 3 2 1 7 7 C 1.38806 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00555 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00323 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47159 * 185.35901 * 10 9 7 12 12 C 1.53001 * 112.84621 * 284.22313 * 11 10 9 13 13 H 1.08998 * 109.57908 * 182.31040 * 12 11 10 14 14 C 1.53184 * 109.59051 * 62.03039 * 12 11 10 15 15 C 1.53042 * 109.34281 * 185.41831 * 14 12 11 16 16 C 1.53103 * 109.50156 * 61.34512 * 15 14 12 17 17 C 1.53191 * 109.33144 * 298.65802 * 16 15 14 18 18 N 1.46920 * 109.70468 * 302.66228 * 12 11 10 19 19 C 1.34780 * 120.63348 * 353.49593 * 18 12 11 20 20 O 1.21516 * 119.99728 * 353.78490 * 19 18 12 21 21 C 1.48136 * 120.00065 * 173.78397 * 19 18 12 22 22 C 1.40108 * 121.14556 * 234.76266 * 21 19 18 23 23 C 1.38501 * 117.82480 * 179.97438 * 22 21 19 24 24 N 1.31913 * 119.96911 * 0.02562 * 23 22 21 25 25 N 1.28283 * 122.51640 * 359.97438 * 24 23 22 26 26 C 1.31923 * 122.32321 * 359.72684 * 25 24 23 27 27 C 1.53780 * 113.61355 * 55.41777 * 11 10 9 28 28 C 1.53957 * 87.01668 * 89.22679 * 27 11 10 29 29 C 1.53777 * 113.61148 * 153.02558 * 11 10 9 30 30 H 0.97002 * 120.00188 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99580 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46990 * 65.35713 * 10 9 7 33 33 H 1.08992 * 109.46913 * 305.35930 * 10 9 7 34 34 H 1.09008 * 109.49883 * 305.38450 * 14 12 11 35 35 H 1.09001 * 109.50349 * 65.44231 * 14 12 11 36 36 H 1.08998 * 109.45951 * 181.40389 * 15 14 12 37 37 H 1.09003 * 109.45554 * 301.35794 * 15 14 12 38 38 H 1.09002 * 109.48593 * 178.70757 * 16 15 14 39 39 H 1.08992 * 109.48930 * 58.61836 * 16 15 14 40 40 H 1.09002 * 109.58624 * 294.85072 * 17 16 15 41 41 H 1.08998 * 109.70738 * 174.49666 * 17 16 15 42 42 H 1.08004 * 121.08695 * 359.95863 * 22 21 19 43 43 H 1.08004 * 120.01598 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.17125 * 180.26899 * 26 25 24 45 45 H 1.08996 * 113.61475 * 203.74836 * 27 11 10 46 46 H 1.08997 * 113.61595 * 334.65658 * 27 11 10 47 47 H 1.08994 * 113.53926 * 270.80719 * 28 27 11 48 48 H 1.09004 * 113.73947 * 139.93792 * 28 27 11 49 49 H 1.09005 * 113.61534 * 25.35171 * 29 11 10 50 50 H 1.09009 * 113.61164 * 156.24855 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0694 -4.8166 -0.1353 12 6 0.3121 -5.1054 1.1624 13 1 -0.3446 -5.9633 1.0189 14 6 -0.5209 -3.8810 1.5543 15 6 -1.1685 -4.1243 2.9194 16 6 -0.0772 -4.3248 3.9744 17 6 0.7608 -5.5543 3.6100 18 7 1.2681 -5.3918 2.2406 19 6 2.5856 -5.5029 1.9788 20 8 2.9808 -5.4787 0.8300 21 6 3.5517 -5.6545 3.0915 22 6 4.6371 -4.7800 3.2329 23 6 5.4976 -4.9846 4.2988 24 7 5.2809 -5.9779 5.1393 25 7 4.2891 -6.7821 5.0155 26 6 3.4085 -6.6710 4.0394 27 6 0.1583 -4.7091 -1.3694 28 6 1.2461 -5.4795 -2.1398 29 6 1.6760 -6.0705 -0.7867 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6110 -3.7571 0.9336 33 1 2.7549 -3.6740 -0.8386 34 1 0.1245 -3.0042 1.6090 35 1 -1.2974 -3.7150 0.8076 36 1 -1.7817 -3.2645 3.1889 37 1 -1.7943 -5.0154 2.8707 38 1 -0.5384 -4.4752 4.9505 39 1 0.5639 -3.4439 4.0063 40 1 0.1406 -6.4489 3.6661 41 1 1.5983 -5.6464 4.3014 42 1 4.7978 -3.9728 2.5335 43 1 6.3461 -4.3318 4.4412 44 1 2.5839 -7.3650 3.9708 45 1 -0.7781 -5.2580 -1.2700 46 1 0.0157 -3.6866 -1.7191 47 1 1.9983 -4.8341 -2.5931 48 1 0.8504 -6.2209 -2.8340 49 1 2.7568 -6.1456 -0.6666 50 1 1.1553 -6.9925 -0.5276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105563461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:21 Heat of formation + Delta-G solvation = 105.688358 kcal Electronic energy + Delta-G solvation = -32966.476776 eV Core-core repulsion = 28997.243127 eV Total energy + Delta-G solvation = -3969.233648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.81231 -41.77937 -39.21036 -38.40777 -36.02369 -34.66738 -33.90719 -33.33429 -32.95603 -31.88184 -28.47076 -27.39098 -26.59972 -25.84107 -25.72802 -25.09750 -23.96728 -22.98502 -22.13655 -20.62461 -19.54667 -18.97055 -18.63858 -18.21087 -17.74732 -17.28680 -16.90530 -16.70856 -16.30206 -16.00904 -15.73632 -15.62550 -15.18010 -15.07562 -14.85774 -14.72321 -14.41474 -14.38134 -14.09528 -13.74618 -13.39516 -13.16888 -12.97377 -12.87440 -12.77684 -12.46797 -12.31989 -12.20555 -12.02449 -11.91851 -11.84407 -11.63296 -11.41746 -11.24596 -11.17623 -11.14160 -11.00864 -10.91073 -10.73740 -10.57024 -10.06994 -9.48164 -8.79942 -7.91368 -5.15384 -0.59300 -0.18452 1.43469 1.45393 1.47030 1.51947 1.89371 2.47304 2.56586 3.03491 3.16675 3.40706 3.41744 3.54220 3.69388 3.75191 3.82577 3.86343 3.96416 4.04238 4.10574 4.13506 4.26229 4.31392 4.34233 4.46290 4.53482 4.54278 4.62269 4.67554 4.77603 4.83994 4.88499 4.90664 4.96673 4.99165 5.07024 5.07961 5.16738 5.23061 5.26775 5.31335 5.34428 5.43297 5.52845 5.59007 5.66398 5.73536 5.81807 6.32117 6.37105 7.20243 7.39177 7.55258 8.20814 8.46924 9.31475 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009356 B = 0.004777 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.974652 B = 5859.784609 C = 6723.340751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.739 5.739 10 C 0.196 3.804 11 C -0.064 4.064 12 C 0.175 3.825 13 H 0.097 0.903 14 C -0.146 4.146 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.100 3.900 18 N -0.586 5.586 19 C 0.538 3.462 20 O -0.506 6.506 21 C -0.121 4.121 22 C -0.078 4.078 23 C 0.053 3.947 24 N -0.260 5.260 25 N -0.263 5.263 26 C 0.073 3.927 27 C -0.136 4.136 28 C -0.142 4.142 29 C -0.096 4.096 30 H 0.249 0.751 31 H 0.381 0.619 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.155 0.845 43 H 0.210 0.790 44 H 0.204 0.796 45 H 0.095 0.905 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -16.677 8.476 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.385 5.385 10 C 0.070 3.930 11 C -0.065 4.065 12 C 0.073 3.927 13 H 0.114 0.886 14 C -0.185 4.185 15 C -0.148 4.148 16 C -0.169 4.169 17 C -0.022 4.022 18 N -0.318 5.318 19 C 0.325 3.675 20 O -0.384 6.384 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.111 4.111 24 N -0.101 5.101 25 N -0.103 5.103 26 C -0.092 4.092 27 C -0.174 4.174 28 C -0.180 4.180 29 C -0.133 4.133 30 H 0.058 0.942 31 H 0.216 0.784 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.173 0.827 43 H 0.226 0.774 44 H 0.220 0.780 45 H 0.114 0.886 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.625 -17.406 9.248 19.777 hybrid contribution -0.310 2.610 -1.704 3.132 sum 1.315 -14.797 7.544 16.661 Atomic orbital electron populations 1.69779 1.06138 1.25721 1.59746 1.25345 0.96280 1.00254 1.04207 0.85387 0.77372 0.80174 0.77893 1.21089 1.22023 1.20662 1.19483 0.90985 0.85915 1.40776 0.92094 1.43105 1.06044 1.00914 1.88423 1.20898 0.92103 0.83014 0.96949 1.21976 0.95327 0.96532 0.92683 1.21222 0.89124 0.97218 0.85115 0.88557 1.22209 0.99451 0.98856 0.97955 1.21466 0.97517 1.02264 0.93575 1.21889 0.97525 0.97492 1.00028 1.22207 0.99252 0.99531 0.81176 1.47930 1.05145 1.68942 1.09803 1.18226 0.82780 0.78413 0.88047 1.91025 1.79365 1.48368 1.19670 1.21339 0.97313 0.98091 0.96772 1.22710 0.92105 0.98118 0.97889 1.24745 0.99949 0.96152 0.90297 1.72821 1.12140 1.01652 1.23507 1.72993 0.99441 1.18905 1.18956 1.24842 0.98983 0.96085 0.89279 1.23014 0.97848 0.99723 0.96796 1.22836 0.98125 0.99427 0.97597 1.23249 1.01941 0.95251 0.92879 0.94198 0.78359 0.95260 0.99093 0.91601 0.92231 0.92764 0.89550 0.88203 0.94469 0.87215 0.89409 0.82710 0.77385 0.77985 0.88630 0.94264 0.92958 0.90239 0.89291 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.21 13.06 21.65 0.28 -57.93 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.96 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.06 3.43 7.83 -2.91 -0.02 3.40 16 9 N -0.74 -37.62 3.73 -343.45 -1.28 -38.90 16 10 C 0.20 8.37 3.94 86.38 0.34 8.71 16 11 C -0.06 -2.12 0.07 -51.65 0.00 -2.13 16 12 C 0.18 4.79 2.33 44.97 0.10 4.90 16 13 H 0.10 2.13 8.13 -2.39 -0.02 2.11 16 14 C -0.15 -4.65 4.00 30.67 0.12 -4.53 16 15 C -0.11 -2.64 5.89 30.64 0.18 -2.46 16 16 C -0.13 -2.74 6.08 30.69 0.19 -2.55 16 17 C 0.10 1.73 5.63 86.36 0.49 2.22 16 18 N -0.59 -14.11 2.93 -798.10 -2.34 -16.46 16 19 C 0.54 14.51 5.53 86.87 0.48 14.99 16 20 O -0.51 -16.39 7.93 -3.77 -0.03 -16.42 16 21 C -0.12 -2.78 4.96 -19.83 -0.10 -2.88 16 22 C -0.08 -1.77 10.00 22.79 0.23 -1.54 16 23 C 0.05 1.04 11.30 84.74 0.96 2.00 16 24 N -0.26 -6.21 11.48 -57.34 -0.66 -6.87 16 25 N -0.26 -6.15 11.49 -56.54 -0.65 -6.80 16 26 C 0.07 1.42 8.76 85.04 0.74 2.17 16 27 C -0.14 -4.47 6.52 31.18 0.20 -4.27 16 28 C -0.14 -4.33 7.74 31.18 0.24 -4.09 16 29 C -0.10 -2.80 5.77 31.12 0.18 -2.62 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 31 H 0.38 19.98 4.77 -92.70 -0.44 19.54 16 32 H 0.03 1.29 4.70 -6.31 -0.03 1.26 16 33 H -0.01 -0.43 7.39 -2.39 -0.02 -0.45 16 34 H 0.07 2.81 5.35 -2.38 -0.01 2.80 16 35 H 0.06 2.01 7.90 -2.39 -0.02 1.99 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.41 4.61 -2.39 -0.01 1.40 16 42 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.20 2.56 7.35 -2.91 -0.02 2.54 16 45 H 0.10 2.59 8.10 -2.39 -0.02 2.58 16 46 H 0.04 1.60 7.22 -2.39 -0.02 1.59 16 47 H 0.05 1.83 7.71 -2.39 -0.02 1.81 16 48 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 49 H 0.09 2.93 5.53 -51.67 -0.29 2.64 16 50 H 0.08 2.03 8.09 -2.38 -0.02 2.01 16 Total: -1.00 -71.12 373.49 3.24 -67.88 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.23 Total: 35.08 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.66 Total: -8.30 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -4.65 Total: -126.95 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.03 Total: -16.42 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -71.12 3.24 -67.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105563461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.565 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds