Wall clock time and date at job start Wed Apr 1 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38545 * 120.01476 * 2 1 4 4 C 1.40072 * 117.81893 * 180.02562 * 3 2 1 5 5 C 1.48143 * 121.14471 * 179.97438 * 4 3 2 6 6 O 1.21520 * 119.99751 * 138.23340 * 5 4 3 7 7 N 1.34775 * 120.00202 * 318.23761 * 5 4 3 8 8 C 1.48114 * 127.84223 * 4.90675 * 7 5 4 9 9 C 1.54333 * 104.69110 * 219.73088 * 8 7 5 10 10 H 1.09002 * 111.84619 * 213.63392 * 9 8 7 11 11 C 1.54164 * 108.86438 * 89.56303 * 9 8 7 12 12 C 1.54847 * 104.32351 * 271.22371 * 11 9 8 13 13 C 1.54834 * 102.73826 * 321.81804 * 12 11 9 14 14 C 1.54158 * 104.32497 * 38.19161 * 13 12 11 15 15 C 1.53001 * 111.82280 * 213.78801 * 14 13 12 16 16 N 1.46498 * 109.47526 * 299.26499 * 15 14 13 17 17 C 1.36933 * 120.00187 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00274 * 359.97438 * 17 16 15 19 19 C 1.38819 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00312 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47302 * 89.99878 * 21 19 17 23 23 H 1.48503 * 109.46805 * 210.00259 * 21 19 17 24 24 H 1.48499 * 109.47408 * 329.99669 * 21 19 17 25 25 C 1.48117 * 127.84180 * 184.59170 * 7 5 4 26 26 C 1.39759 * 117.71047 * 359.97438 * 4 3 2 27 27 C 1.50694 * 120.17771 * 180.02562 * 26 4 3 28 28 N 1.31899 * 119.65126 * 0.02562 * 26 4 3 29 29 N 1.28270 * 122.33517 * 359.97438 * 28 26 4 30 30 H 1.09000 * 109.46655 * 269.97660 * 1 2 3 31 31 H 1.08993 * 109.47317 * 29.97793 * 1 2 3 32 32 H 1.09002 * 109.46626 * 149.97521 * 1 2 3 33 33 H 1.08002 * 121.09098 * 0.02562 * 3 2 1 34 34 H 1.09003 * 110.39195 * 338.53339 * 8 7 5 35 35 H 1.08993 * 110.39314 * 100.80902 * 8 7 5 36 36 H 1.08996 * 110.45873 * 29.93510 * 11 9 8 37 37 H 1.08995 * 110.46205 * 152.51362 * 11 9 8 38 38 H 1.08998 * 110.75610 * 80.13169 * 12 11 9 39 39 H 1.08997 * 110.75451 * 203.31686 * 12 11 9 40 40 H 1.08999 * 110.46529 * 156.90457 * 13 12 11 41 41 H 1.09003 * 110.46329 * 279.34967 * 13 12 11 42 42 H 1.09002 * 109.46735 * 59.25903 * 15 14 13 43 43 H 1.09000 * 109.47410 * 179.25632 * 15 14 13 44 44 H 0.97001 * 119.99724 * 359.97438 * 16 15 14 45 45 H 0.97001 * 120.00375 * 179.97438 * 20 19 17 46 46 H 1.08994 * 110.38949 * 259.08166 * 25 7 5 47 47 H 1.08997 * 110.39298 * 21.47297 * 25 7 5 48 48 H 1.08996 * 109.47308 * 275.73178 * 27 26 4 49 49 H 1.09000 * 109.46853 * 35.72883 * 27 26 4 50 50 H 1.09004 * 109.47221 * 155.72631 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0006 5 6 4.4140 2.3836 -0.0012 6 8 5.4040 2.4599 0.6994 7 7 4.0568 3.4249 -0.7786 8 6 2.8423 3.5593 -1.6158 9 6 3.3318 4.2467 -2.9080 10 1 2.5745 4.9096 -3.3267 11 6 3.7653 3.1633 -3.9154 12 6 5.2594 2.9159 -3.5927 13 6 5.7785 4.3381 -3.2679 14 6 4.6210 4.9988 -2.4932 15 6 4.5257 6.4982 -2.7826 16 7 5.7690 7.1550 -2.3713 17 6 5.9156 8.5066 -2.5342 18 1 5.1150 9.0885 -2.9663 19 6 7.0935 9.1290 -2.1439 20 7 7.2347 10.4282 -2.3010 21 14 8.4781 8.1227 -1.3959 22 1 9.3801 7.6435 -2.4738 23 1 9.2465 8.9671 -0.4462 24 1 7.9084 6.9575 -0.6727 25 6 4.7864 4.6973 -0.9849 26 6 4.2018 -0.1153 -0.0005 27 6 5.7037 -0.2378 -0.0005 28 7 3.4484 -1.1979 -0.0005 29 7 2.1669 -1.1420 0.0000 30 1 -0.3632 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6782 2.1452 0.0004 34 1 2.4263 2.5775 -1.8419 35 1 2.1002 4.1784 -1.1118 36 1 3.1872 2.2513 -3.7664 37 1 3.6509 3.5253 -4.9371 38 1 5.3645 2.2596 -2.7289 39 1 5.7776 2.5005 -4.4570 40 1 6.6719 4.2848 -2.6458 41 1 5.9870 4.8867 -4.1864 42 1 4.3692 6.6529 -3.8501 43 1 3.6894 6.9230 -2.2274 44 1 6.4880 6.6324 -1.9828 45 1 8.0577 10.8631 -2.0279 46 1 4.3416 5.4916 -0.3855 47 1 5.8401 4.5758 -0.7342 48 1 6.0742 -0.1651 -1.0230 49 1 6.1336 0.5642 0.5996 50 1 5.9897 -1.2011 0.4220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112372105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:00 Heat of formation + Delta-G solvation = 38.227888 kcal Electronic energy + Delta-G solvation = -31513.844288 eV Core-core repulsion = 27541.685334 eV Total energy + Delta-G solvation = -3972.158954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81459 -40.75542 -38.79377 -35.31536 -34.82015 -34.39511 -33.83760 -31.85608 -30.50415 -30.27940 -29.52090 -27.20213 -26.53159 -25.76275 -24.93273 -23.62982 -22.97985 -21.97296 -20.33604 -20.03312 -19.06659 -18.09340 -17.84671 -17.26170 -16.40908 -16.20822 -15.99452 -15.68258 -14.74041 -14.62830 -14.47990 -14.42865 -13.98239 -13.84977 -13.81296 -13.67678 -13.34706 -13.23447 -13.12257 -12.91192 -12.77503 -12.65201 -12.50541 -12.31051 -11.88430 -11.70030 -11.36029 -11.06984 -10.99306 -10.92719 -10.81541 -10.75800 -10.65296 -10.56604 -10.53200 -10.36802 -10.12245 -9.84467 -9.77683 -9.62716 -8.97010 -8.87296 -7.29119 -5.81290 -3.17371 0.03244 0.43495 2.28864 2.53651 3.10745 3.35164 3.38215 3.43961 3.52682 3.78452 3.95535 4.04928 4.19896 4.27388 4.42857 4.48507 4.55607 4.64745 4.83885 4.96800 5.02362 5.05962 5.08301 5.10238 5.11611 5.26291 5.31560 5.33080 5.36796 5.37770 5.46517 5.52344 5.55655 5.59392 5.63560 5.70630 5.73677 5.74714 5.86688 5.93689 5.97209 6.02243 6.03845 6.23057 6.25857 6.38005 6.53442 6.58103 7.21634 7.74673 7.93576 8.30185 8.37457 9.16029 9.88451 10.07396 11.36966 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003095 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.259980 B = 9044.446384 C = 9565.050574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.087 4.087 4 C -0.116 4.116 5 C 0.582 3.418 6 O -0.519 6.519 7 N -0.605 5.605 8 C 0.096 3.904 9 C -0.096 4.096 10 H 0.101 0.899 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.077 4.077 15 C 0.179 3.821 16 N -0.754 5.754 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.933 5.933 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.119 3.881 26 C 0.114 3.886 27 C -0.120 4.120 28 N -0.239 5.239 29 N -0.228 5.228 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 -21.502 0.776 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.116 4.116 4 C -0.130 4.130 5 C 0.369 3.631 6 O -0.396 6.396 7 N -0.338 5.338 8 C -0.027 4.027 9 C -0.116 4.116 10 H 0.119 0.881 11 C -0.152 4.152 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.079 4.079 15 C 0.051 3.949 16 N -0.400 5.400 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.002 4.002 26 C -0.031 4.031 27 C -0.178 4.178 28 N -0.081 5.081 29 N -0.071 5.071 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.126 0.874 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.420 -22.961 1.170 26.621 hybrid contribution 1.041 1.059 0.576 1.593 sum -12.379 -21.902 1.746 25.219 Atomic orbital electron populations 1.20701 0.86870 1.04354 1.03910 1.22872 0.99326 0.89860 0.96500 1.22620 0.93134 1.00631 0.95211 1.21040 0.94550 0.95475 1.01961 1.17419 0.84390 0.81377 0.79906 1.90788 1.26856 1.81292 1.40651 1.48848 1.24020 1.16663 1.44270 1.22808 0.87505 1.00929 0.91451 1.22700 0.97619 0.96846 0.94420 0.88102 1.22399 0.96393 0.97370 0.99074 1.22461 0.95542 0.97384 1.00635 1.22388 0.96901 0.94621 1.00698 1.22389 0.94639 0.97011 0.93825 1.20556 0.89984 0.86495 0.97822 1.42680 1.14764 1.06256 1.76259 1.19018 1.01232 0.82251 1.35023 0.89185 1.24654 0.97719 0.95407 1.01107 1.69692 1.27147 1.08001 1.53231 0.86615 0.83307 0.79720 0.79302 1.21018 1.21657 1.20253 1.22642 0.98391 0.83429 0.95741 1.23016 0.99549 0.88388 0.92112 1.21032 0.86772 1.05663 1.04368 1.73058 0.98957 1.26131 1.09930 1.72808 1.01775 1.24904 1.07612 0.89641 0.89991 0.89647 0.82605 0.90315 0.90220 0.92152 0.91007 0.92351 0.91738 0.91708 0.90411 0.94786 0.95262 0.80581 0.93005 0.89861 0.89594 0.89784 0.87406 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.01 0.37 -0.13 16 2 C 0.06 0.52 6.86 -82.45 -0.57 -0.04 16 3 C -0.09 -0.75 7.66 -38.78 -0.30 -1.04 16 4 C -0.12 -1.30 5.48 -104.57 -0.57 -1.87 16 5 C 0.58 7.58 7.19 -12.19 -0.09 7.49 16 6 O -0.52 -8.44 14.86 5.35 0.08 -8.36 16 7 N -0.61 -7.08 2.52 -170.20 -0.43 -7.51 16 8 C 0.10 0.82 4.99 -2.46 -0.01 0.81 16 9 C -0.10 -0.93 3.60 -88.30 -0.32 -1.25 16 10 H 0.10 0.87 7.92 -51.93 -0.41 0.46 16 11 C -0.11 -1.06 6.27 -25.15 -0.16 -1.22 16 12 C -0.12 -1.35 6.52 -24.79 -0.16 -1.51 16 13 C -0.11 -1.46 5.28 -25.16 -0.13 -1.60 16 14 C -0.08 -1.02 0.67 -152.00 -0.10 -1.12 16 15 C 0.18 3.04 5.16 -4.04 -0.02 3.02 16 16 N -0.75 -16.66 5.05 -59.91 -0.30 -16.96 16 17 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 21 Si 0.88 21.86 27.73 -169.99 -4.71 17.14 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 25 C 0.12 1.67 5.64 -2.26 -0.01 1.66 16 26 C 0.11 1.36 6.90 -82.00 -0.57 0.79 16 27 C -0.12 -1.28 9.69 36.00 0.35 -0.93 16 28 N -0.24 -3.05 11.42 33.81 0.39 -2.67 16 29 N -0.23 -2.69 11.40 33.58 0.38 -2.31 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.16 0.93 6.66 -52.49 -0.35 0.58 16 34 H 0.08 0.56 5.26 -51.93 -0.27 0.29 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.96 7.47 -51.93 -0.39 0.57 16 41 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.36 7.95 4.97 -40.82 -0.20 7.74 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.08 1.22 7.98 -51.93 -0.41 0.81 16 47 H 0.09 1.39 7.24 -51.93 -0.38 1.01 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.11 1.31 5.62 -51.93 -0.29 1.01 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -33.53 389.71 -8.22 -41.74 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.72 Total: 4.78 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.55 Total: -3.67 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.81 Total: -57.51 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.53 -8.22 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112372105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.972 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds