Wall clock time and date at job start Wed Apr 1 2020 03:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38545 * 120.01476 * 2 1 4 4 C 1.40072 * 117.81893 * 180.02562 * 3 2 1 5 5 C 1.48143 * 121.14471 * 179.97438 * 4 3 2 6 6 O 1.21520 * 119.99751 * 138.23340 * 5 4 3 7 7 N 1.34775 * 120.00202 * 318.23761 * 5 4 3 8 8 C 1.48114 * 127.84223 * 4.90675 * 7 5 4 9 9 C 1.54333 * 104.69110 * 219.73088 * 8 7 5 10 10 H 1.09002 * 111.84619 * 213.63392 * 9 8 7 11 11 C 1.54164 * 108.86438 * 89.56303 * 9 8 7 12 12 C 1.54847 * 104.32351 * 271.22371 * 11 9 8 13 13 C 1.54834 * 102.73826 * 321.81804 * 12 11 9 14 14 C 1.54158 * 104.32497 * 38.19161 * 13 12 11 15 15 C 1.53001 * 111.82280 * 213.78801 * 14 13 12 16 16 N 1.46498 * 109.47526 * 299.26499 * 15 14 13 17 17 C 1.36933 * 120.00187 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00274 * 359.97438 * 17 16 15 19 19 C 1.38819 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00312 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47302 * 89.99878 * 21 19 17 23 23 H 1.48503 * 109.46805 * 210.00259 * 21 19 17 24 24 H 1.48499 * 109.47408 * 329.99669 * 21 19 17 25 25 C 1.48117 * 127.84180 * 184.59170 * 7 5 4 26 26 C 1.39759 * 117.71047 * 359.97438 * 4 3 2 27 27 C 1.50694 * 120.17771 * 180.02562 * 26 4 3 28 28 N 1.31899 * 119.65126 * 0.02562 * 26 4 3 29 29 N 1.28270 * 122.33517 * 359.97438 * 28 26 4 30 30 H 1.09000 * 109.46655 * 269.97660 * 1 2 3 31 31 H 1.08993 * 109.47317 * 29.97793 * 1 2 3 32 32 H 1.09002 * 109.46626 * 149.97521 * 1 2 3 33 33 H 1.08002 * 121.09098 * 0.02562 * 3 2 1 34 34 H 1.09003 * 110.39195 * 338.53339 * 8 7 5 35 35 H 1.08993 * 110.39314 * 100.80902 * 8 7 5 36 36 H 1.08996 * 110.45873 * 29.93510 * 11 9 8 37 37 H 1.08995 * 110.46205 * 152.51362 * 11 9 8 38 38 H 1.08998 * 110.75610 * 80.13169 * 12 11 9 39 39 H 1.08997 * 110.75451 * 203.31686 * 12 11 9 40 40 H 1.08999 * 110.46529 * 156.90457 * 13 12 11 41 41 H 1.09003 * 110.46329 * 279.34967 * 13 12 11 42 42 H 1.09002 * 109.46735 * 59.25903 * 15 14 13 43 43 H 1.09000 * 109.47410 * 179.25632 * 15 14 13 44 44 H 0.97001 * 119.99724 * 359.97438 * 16 15 14 45 45 H 0.97001 * 120.00375 * 179.97438 * 20 19 17 46 46 H 1.08994 * 110.38949 * 259.08166 * 25 7 5 47 47 H 1.08997 * 110.39298 * 21.47297 * 25 7 5 48 48 H 1.08996 * 109.47308 * 275.73178 * 27 26 4 49 49 H 1.09000 * 109.46853 * 35.72883 * 27 26 4 50 50 H 1.09004 * 109.47221 * 155.72631 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0006 5 6 4.4140 2.3836 -0.0012 6 8 5.4040 2.4599 0.6994 7 7 4.0568 3.4249 -0.7786 8 6 2.8423 3.5593 -1.6158 9 6 3.3318 4.2467 -2.9080 10 1 2.5745 4.9096 -3.3267 11 6 3.7653 3.1633 -3.9154 12 6 5.2594 2.9159 -3.5927 13 6 5.7785 4.3381 -3.2679 14 6 4.6210 4.9988 -2.4932 15 6 4.5257 6.4982 -2.7826 16 7 5.7690 7.1550 -2.3713 17 6 5.9156 8.5066 -2.5342 18 1 5.1150 9.0885 -2.9663 19 6 7.0935 9.1290 -2.1439 20 7 7.2347 10.4282 -2.3010 21 14 8.4781 8.1227 -1.3959 22 1 9.3801 7.6435 -2.4738 23 1 9.2465 8.9671 -0.4462 24 1 7.9084 6.9575 -0.6727 25 6 4.7864 4.6973 -0.9849 26 6 4.2018 -0.1153 -0.0005 27 6 5.7037 -0.2378 -0.0005 28 7 3.4484 -1.1979 -0.0005 29 7 2.1669 -1.1420 0.0000 30 1 -0.3632 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6782 2.1452 0.0004 34 1 2.4263 2.5775 -1.8419 35 1 2.1002 4.1784 -1.1118 36 1 3.1872 2.2513 -3.7664 37 1 3.6509 3.5253 -4.9371 38 1 5.3645 2.2596 -2.7289 39 1 5.7776 2.5005 -4.4570 40 1 6.6719 4.2848 -2.6458 41 1 5.9870 4.8867 -4.1864 42 1 4.3692 6.6529 -3.8501 43 1 3.6894 6.9230 -2.2274 44 1 6.4880 6.6324 -1.9828 45 1 8.0577 10.8631 -2.0279 46 1 4.3416 5.4916 -0.3855 47 1 5.8401 4.5758 -0.7342 48 1 6.0742 -0.1651 -1.0230 49 1 6.1336 0.5642 0.5996 50 1 5.9897 -1.2011 0.4220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112372105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:59 Heat of formation + Delta-G solvation = 16.646307 kcal Electronic energy + Delta-G solvation = -31514.780135 eV Core-core repulsion = 27541.685334 eV Total energy + Delta-G solvation = -3973.094801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64593 -41.67821 -39.81220 -36.72998 -35.79989 -35.40948 -34.65089 -33.68149 -31.55711 -31.19685 -30.58861 -27.98050 -27.67406 -26.64175 -26.05526 -24.80866 -23.78859 -23.51087 -21.25683 -20.94732 -20.32021 -19.49581 -18.88550 -18.27681 -17.44543 -17.05251 -16.87022 -16.55758 -16.44673 -15.84774 -15.56039 -15.37058 -15.18181 -14.92355 -14.73285 -14.53632 -14.45634 -14.28691 -14.12843 -14.02170 -13.69110 -13.51069 -13.37879 -13.29966 -13.08136 -13.05676 -12.78033 -12.25319 -12.14561 -11.97906 -11.87704 -11.84382 -11.76884 -11.67356 -11.63290 -11.56711 -11.49226 -11.25554 -10.97961 -10.66434 -10.56412 -9.84985 -9.27494 -8.03239 -5.34494 -0.76001 -0.29518 1.33679 1.35559 1.36137 1.42946 1.60578 2.31979 2.45709 2.81278 2.97276 3.20226 3.24480 3.29210 3.39776 3.44015 3.52311 3.69943 3.88428 4.00728 4.08538 4.11276 4.18105 4.22153 4.32172 4.36595 4.40885 4.48345 4.52027 4.61945 4.63720 4.65277 4.74724 4.77063 4.79514 4.83458 4.88060 4.95951 5.03328 5.06327 5.07992 5.11131 5.16804 5.24762 5.28982 5.30558 5.38424 5.40579 5.77720 6.21428 6.29650 6.78075 7.08614 7.52479 7.86221 8.02308 9.18457 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003095 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.259980 B = 9044.446384 C = 9565.050574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.066 3.934 3 C -0.069 4.069 4 C -0.127 4.127 5 C 0.583 3.417 6 O -0.562 6.562 7 N -0.600 5.600 8 C 0.093 3.907 9 C -0.088 4.088 10 H 0.123 0.877 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.112 4.112 14 C -0.071 4.071 15 C 0.176 3.824 16 N -0.757 5.757 17 C -0.223 4.223 18 H 0.065 0.935 19 C -0.059 4.059 20 N -0.982 5.982 21 Si 0.941 3.059 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.259 1.259 25 C 0.121 3.879 26 C 0.102 3.898 27 C -0.116 4.116 28 N -0.264 5.264 29 N -0.256 5.256 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.191 0.809 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.362 0.638 45 H 0.257 0.743 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 -23.450 0.306 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.141 4.141 5 C 0.371 3.629 6 O -0.442 6.442 7 N -0.331 5.331 8 C -0.028 4.028 9 C -0.108 4.108 10 H 0.141 0.859 11 C -0.146 4.146 12 C -0.155 4.155 13 C -0.150 4.150 14 C -0.072 4.072 15 C 0.050 3.950 16 N -0.403 5.403 17 C -0.355 4.355 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.634 5.634 21 Si 0.770 3.230 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.184 1.184 25 C -0.001 4.001 26 C -0.044 4.044 27 C -0.174 4.174 28 N -0.105 5.105 29 N -0.097 5.097 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.195 0.805 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.108 0.892 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.595 -24.979 0.675 29.997 hybrid contribution 1.879 1.687 0.680 2.615 sum -14.716 -23.292 1.354 27.585 Atomic orbital electron populations 1.20898 0.83795 1.05975 1.05117 1.23490 1.01101 0.88937 0.94441 1.22992 0.91853 1.02047 0.92963 1.20893 0.95618 0.94073 1.03558 1.17678 0.83966 0.81906 0.79348 1.90771 1.28790 1.82051 1.42556 1.48817 1.24720 1.15401 1.44146 1.23130 0.86532 1.02735 0.90434 1.22730 0.95938 0.96829 0.95269 0.85923 1.22403 0.94750 0.98044 0.99362 1.22408 0.97256 0.95305 1.00548 1.22368 0.96435 0.96467 0.99716 1.22223 0.96919 0.94717 0.93358 1.20748 0.87762 0.88722 0.97737 1.42745 1.16777 1.04577 1.76177 1.19051 0.99873 0.84209 1.32318 0.91727 1.25349 1.00469 0.96329 1.02936 1.69850 1.27852 1.09902 1.55761 0.85616 0.80345 0.78597 0.78484 1.20622 1.22432 1.18427 1.22426 0.97034 0.84531 0.96132 1.23099 0.99788 0.88777 0.92698 1.20961 0.86706 1.05298 1.04466 1.73015 0.99722 1.26652 1.11084 1.72740 1.01504 1.26732 1.08754 0.88437 0.86903 0.89541 0.79221 0.87919 0.87434 0.90110 0.90157 0.93212 0.91062 0.93933 0.91528 0.94501 0.94506 0.80496 0.93449 0.90522 0.92546 0.89150 0.89189 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.19 71.24 0.73 0.19 16 2 C 0.07 0.93 6.86 42.62 0.29 1.22 16 3 C -0.07 -0.92 7.66 22.79 0.17 -0.75 16 4 C -0.13 -2.61 5.48 -19.83 -0.11 -2.72 16 5 C 0.58 14.50 7.19 86.87 0.62 15.12 16 6 O -0.56 -18.60 14.86 -3.78 -0.06 -18.66 16 7 N -0.60 -12.69 2.52 -810.68 -2.04 -14.73 16 8 C 0.09 1.15 4.99 86.52 0.43 1.59 16 9 C -0.09 -1.35 3.60 -9.29 -0.03 -1.38 16 10 H 0.12 1.46 7.92 -2.39 -0.02 1.44 16 11 C -0.11 -1.56 6.27 31.62 0.20 -1.36 16 12 C -0.12 -2.36 6.52 31.85 0.21 -2.15 16 13 C -0.11 -2.94 5.28 31.61 0.17 -2.77 16 14 C -0.07 -1.74 0.67 -50.55 -0.03 -1.78 16 15 C 0.18 5.73 5.16 86.38 0.45 6.18 16 16 N -0.76 -33.24 5.05 -343.45 -1.73 -34.97 16 17 C -0.22 -12.26 10.47 84.04 0.88 -11.38 16 18 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 19 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 20 N -0.98 -62.42 13.97 21.65 0.30 -62.12 16 21 Si 0.94 46.03 27.73 68.60 1.90 47.93 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 24 H -0.26 -11.75 6.52 99.48 0.65 -11.11 16 25 C 0.12 3.28 5.64 86.65 0.49 3.77 16 26 C 0.10 2.36 6.90 42.91 0.30 2.65 16 27 C -0.12 -2.51 9.69 71.23 0.69 -1.82 16 28 N -0.26 -6.51 11.42 -46.95 -0.54 -7.05 16 29 N -0.26 -5.54 11.40 -47.68 -0.54 -6.08 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 -0.05 8.09 -2.39 -0.02 -0.07 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.19 1.15 6.66 -2.91 -0.02 1.13 16 34 H 0.10 0.85 5.26 -2.39 -0.01 0.84 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.91 7.45 -2.39 -0.02 0.89 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.28 7.47 -2.39 -0.02 1.26 16 41 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.36 15.84 4.97 -92.71 -0.46 15.38 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.08 2.17 7.98 -2.39 -0.02 2.15 16 47 H 0.06 1.86 7.24 -2.39 -0.02 1.84 16 48 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.09 2.29 5.62 -2.39 -0.01 2.28 16 50 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -77.02 389.71 3.64 -73.37 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.44 Total: 20.68 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.91 Total: 1.63 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.56 Total: -124.96 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.06 Total: -18.66 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -77.02 3.64 -73.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112372105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.017 kcal (2) G-P(sol) polarization free energy of solvation -77.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds