Wall clock time and date at job start Wed Apr 1 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36732 * 127.14180 * 2 1 4 4 C 1.50703 * 126.34510 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47058 * 89.99919 * 4 3 2 6 6 H 1.08999 * 109.46818 * 55.00118 * 5 4 3 7 7 O 1.42900 * 109.47066 * 295.00083 * 5 4 3 8 8 C 1.50697 * 109.47091 * 174.99958 * 5 4 3 9 9 H 1.07999 * 120.00136 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00018 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00080 * 180.02562 * 10 8 5 12 12 Si 1.86807 * 119.99820 * 0.02562 * 10 8 5 13 13 H 1.48497 * 109.47061 * 89.99821 * 12 10 8 14 14 H 1.48500 * 109.46728 * 209.99715 * 12 10 8 15 15 H 1.48498 * 109.47122 * 329.99826 * 12 10 8 16 16 N 1.30293 * 107.30639 * 179.97438 * 3 2 1 17 17 N 1.28522 * 110.05816 * 0.02562 * 16 3 2 18 18 C 1.31220 * 109.85573 * 359.97438 * 17 16 3 19 19 N 1.38583 * 126.47440 * 180.26220 * 18 17 16 20 20 C 1.48491 * 111.00087 * 115.07252 * 19 18 17 21 21 C 1.54229 * 104.77801 * 200.61486 * 20 19 18 22 22 H 1.08996 * 113.60580 * 259.98164 * 21 20 19 23 23 C 1.56102 * 107.90521 * 133.81758 * 21 20 19 24 24 H 1.09006 * 116.88207 * 85.75322 * 23 21 20 25 25 C 1.53352 * 104.15287 * 315.98440 * 23 21 20 26 26 C 1.31784 * 108.42498 * 289.74589 * 25 23 21 27 27 C 1.53348 * 108.41538 * 0.02562 * 26 25 23 28 28 H 1.09003 * 116.93139 * 199.99536 * 27 26 25 29 29 C 1.57219 * 99.83950 * 326.69175 * 27 26 25 30 30 C 1.55765 * 104.76690 * 24.00245 * 21 20 19 31 31 C 1.53000 * 113.81183 * 236.11527 * 30 21 20 32 32 C 1.48501 * 110.99370 * 359.69375 * 19 18 17 33 33 H 1.08996 * 109.47254 * 270.04571 * 1 2 3 34 34 H 1.08997 * 109.46866 * 30.04177 * 1 2 3 35 35 H 1.09001 * 109.47302 * 150.04334 * 1 2 3 36 36 H 1.08998 * 109.47322 * 209.99884 * 4 3 2 37 37 H 1.09004 * 109.47301 * 330.00079 * 4 3 2 38 38 H 0.96699 * 114.00642 * 299.99917 * 7 5 4 39 39 H 0.97003 * 119.99982 * 180.02562 * 11 10 8 40 40 H 1.09002 * 110.37737 * 319.44253 * 20 19 18 41 41 H 1.08996 * 110.37359 * 81.78816 * 20 19 18 42 42 H 1.08003 * 125.78731 * 109.73739 * 25 23 21 43 43 H 1.07998 * 125.79604 * 180.02562 * 26 25 23 44 44 H 1.09007 * 112.52389 * 165.44670 * 29 27 26 45 45 H 1.08993 * 112.52810 * 293.31260 * 29 27 26 46 46 H 1.09000 * 109.47057 * 180.33307 * 31 30 21 47 47 H 1.08998 * 109.47576 * 300.33724 * 31 30 21 48 48 H 1.09004 * 109.46905 * 60.33972 * 31 30 21 49 49 H 1.09004 * 110.37457 * 278.22829 * 32 19 18 50 50 H 1.08994 * 110.38085 * 40.58628 * 32 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8622 2.5348 -0.0005 5 6 1.7167 3.0242 1.4418 6 1 2.6472 2.8469 1.9812 7 8 0.6533 2.3148 2.0805 8 6 1.4086 4.4993 1.4431 9 1 1.3245 5.0342 0.5087 10 6 1.2330 5.1658 2.6372 11 7 0.9636 6.4531 2.6384 12 14 1.3778 4.2404 4.2535 13 1 2.7859 4.2818 4.7232 14 1 0.4987 4.8756 5.2679 15 1 0.9638 2.8283 4.0542 16 7 3.5162 0.6478 0.0006 17 7 3.5212 -0.6374 0.0004 18 6 2.2888 -1.0878 0.0002 19 7 1.8976 -2.4173 0.0051 20 6 1.1817 -2.7568 1.2610 21 6 1.2842 -4.2919 1.3696 22 1 0.3837 -4.8134 1.0456 23 6 1.7006 -4.6427 2.8326 24 1 0.8989 -4.7278 3.5663 25 6 2.8138 -3.6389 3.1566 26 6 3.8794 -3.9558 2.4490 27 6 3.5496 -5.1923 1.6040 28 1 4.3924 -5.7732 1.2292 29 6 2.5653 -5.9314 2.5821 30 6 2.5440 -4.6658 0.5332 31 6 2.2682 -5.6793 -0.5793 32 6 3.0774 -3.3191 0.0034 33 1 -0.3633 0.0008 1.0276 34 1 -0.3633 0.8896 -0.5145 35 1 -0.3634 -0.8904 -0.5132 36 1 2.6124 3.1360 -0.5142 37 1 0.9058 2.6301 -0.5147 38 1 -0.2068 2.4269 1.6530 39 1 0.8404 6.9221 3.4785 40 1 1.6667 -2.2827 2.1143 41 1 0.1379 -2.4496 1.1977 42 1 2.7373 -2.8123 3.8475 43 1 4.8245 -3.4334 2.4618 44 1 2.0016 -6.7229 2.0880 45 1 3.0613 -6.2833 3.4866 46 1 3.1941 -5.8937 -1.1131 47 1 1.8782 -6.5994 -0.1442 48 1 1.5360 -5.2667 -1.2733 49 1 3.4642 -3.4360 -1.0090 50 1 3.8525 -2.9313 0.6643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121394343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:35 Heat of formation + Delta-G solvation = 93.829526 kcal Electronic energy + Delta-G solvation = -31856.647558 eV Core-core repulsion = 27886.899672 eV Total energy + Delta-G solvation = -3969.747886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80938 -41.99955 -37.07635 -36.50478 -34.58846 -32.94830 -32.33757 -31.63430 -30.85921 -29.04846 -27.85171 -27.33910 -26.38216 -26.17611 -25.39838 -22.56325 -21.60338 -20.93916 -20.37936 -20.11566 -19.79793 -17.76532 -17.58780 -17.01751 -16.66864 -16.18990 -15.85867 -15.56531 -14.94585 -14.62575 -14.45444 -14.09728 -14.06763 -13.67816 -13.46054 -13.27327 -13.03597 -12.89652 -12.67380 -12.61135 -12.56106 -12.36810 -11.86664 -11.77298 -11.54548 -11.45480 -11.40736 -11.32270 -11.10100 -11.01059 -10.87265 -10.71985 -10.44795 -10.37734 -10.31802 -10.12985 -9.82718 -9.55641 -9.15367 -8.97872 -8.71728 -8.50096 -7.94076 -6.19834 -4.32188 2.00989 2.07063 2.55111 3.19903 3.35439 3.44578 3.68100 3.77631 3.96180 4.06002 4.26968 4.47260 4.63022 4.65530 4.72006 4.77072 4.86628 4.89969 4.94594 5.00086 5.04755 5.12283 5.20292 5.21701 5.27928 5.30836 5.38248 5.46586 5.49286 5.50887 5.58741 5.61526 5.66446 5.71880 5.77005 5.79101 5.84274 5.90909 5.93285 6.04483 6.06425 6.14373 6.25793 6.29171 6.50952 6.51970 6.70943 6.83020 7.22409 7.38225 7.49072 8.18385 8.71167 8.87830 9.15517 9.43937 10.90380 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003165 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.332748 B = 8844.311998 C = 9503.689780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.472 5.472 3 C 0.212 3.788 4 C -0.051 4.051 5 C 0.202 3.798 6 H 0.062 0.938 7 O -0.580 6.580 8 C -0.565 4.565 9 H 0.076 0.924 10 C 0.087 3.913 11 N -0.889 5.889 12 Si 0.871 3.129 13 H -0.286 1.286 14 H -0.295 1.295 15 H -0.220 1.220 16 N -0.297 5.297 17 N -0.322 5.322 18 C 0.328 3.672 19 N -0.427 5.427 20 C 0.036 3.964 21 C -0.080 4.080 22 H 0.097 0.903 23 C -0.073 4.073 24 H 0.102 0.898 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.067 4.067 28 H 0.103 0.897 29 C -0.118 4.118 30 C -0.063 4.063 31 C -0.125 4.125 32 C 0.057 3.943 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.351 0.649 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -26.991 -3.365 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.165 5.165 3 C -0.056 4.056 4 C -0.092 4.092 5 C 0.144 3.856 6 H 0.080 0.920 7 O -0.386 6.386 8 C -0.602 4.602 9 H 0.094 0.906 10 C -0.118 4.118 11 N -0.526 5.526 12 Si 0.697 3.303 13 H -0.213 1.213 14 H -0.222 1.222 15 H -0.143 1.143 16 N -0.136 5.136 17 N -0.167 5.167 18 C -0.029 4.029 19 N -0.151 5.151 20 C -0.091 4.091 21 C -0.099 4.099 22 H 0.115 0.885 23 C -0.092 4.092 24 H 0.120 0.880 25 C -0.189 4.189 26 C -0.178 4.178 27 C -0.086 4.086 28 H 0.121 0.879 29 C -0.155 4.155 30 C -0.063 4.063 31 C -0.183 4.183 32 C -0.070 4.070 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.723 -27.083 -3.372 27.301 hybrid contribution -1.344 0.442 1.024 1.746 sum -2.066 -26.640 -2.348 26.823 Atomic orbital electron populations 1.22035 0.75809 1.04392 1.04073 1.45939 1.08484 1.05655 1.56469 1.25226 0.86275 0.92074 1.02043 1.20936 1.02042 0.83646 1.02543 1.19788 0.88011 0.91385 0.86406 0.92036 1.86742 1.19326 1.74647 1.57893 1.21422 1.51824 0.91860 0.95092 0.90587 1.24962 0.92540 0.94455 0.99864 1.69945 1.46397 1.08665 1.27566 0.87027 0.77788 0.83547 0.81927 1.21264 1.22208 1.14289 1.73974 1.17635 1.02220 1.19771 1.74465 1.15710 1.03966 1.22518 1.22669 0.87163 0.87614 1.05452 1.62192 1.21676 0.96915 1.34310 1.23478 0.99366 0.95806 0.90465 1.23105 0.98058 0.94193 0.94560 0.88478 1.22983 0.96466 0.94181 0.95522 0.87979 1.23947 0.94953 0.99785 1.00181 1.23960 0.98764 0.98221 0.96810 1.22992 0.96770 0.94588 0.94220 0.87934 1.24043 0.96296 0.96434 0.98749 1.22487 0.94445 0.94706 0.94696 1.21587 1.01975 0.97597 0.97103 1.23323 0.91184 0.89620 1.02833 0.89887 0.89139 0.89716 0.88050 0.90551 0.80288 0.92451 0.91226 0.90059 0.85775 0.85449 0.90576 0.90717 0.92196 0.92331 0.91853 0.89781 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.84 59.85 0.59 1.53 16 2 N -0.47 -7.62 3.21 -121.46 -0.39 -8.01 16 3 C 0.21 4.04 7.09 -154.02 -1.09 2.94 16 4 C -0.05 -0.98 5.21 -27.88 -0.15 -1.12 16 5 C 0.20 4.55 2.30 -27.88 -0.06 4.49 16 6 H 0.06 1.54 7.57 -51.93 -0.39 1.14 16 7 O -0.58 -12.10 9.69 -35.23 -0.34 -12.44 16 8 C -0.56 -14.99 9.34 -34.44 -0.32 -15.32 16 9 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 11 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 12 Si 0.87 21.59 26.99 -169.99 -4.59 17.00 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 15 H -0.22 -5.32 5.31 56.52 0.30 -5.02 16 16 N -0.30 -6.31 12.18 32.99 0.40 -5.91 16 17 N -0.32 -6.32 10.98 30.32 0.33 -5.99 16 18 C 0.33 5.46 6.99 -318.87 -2.23 3.23 16 19 N -0.43 -5.60 5.42 -170.38 -0.92 -6.52 16 20 C 0.04 0.40 5.21 -2.30 -0.01 0.39 16 21 C -0.08 -0.69 3.65 -86.84 -0.32 -1.01 16 22 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 23 C -0.07 -0.60 4.98 -86.50 -0.43 -1.03 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 25 C -0.17 -1.77 7.54 -34.86 -0.26 -2.03 16 26 C -0.16 -1.64 7.54 -34.87 -0.26 -1.90 16 27 C -0.07 -0.55 4.50 -86.51 -0.39 -0.94 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 C -0.12 -0.84 6.64 -22.16 -0.15 -0.98 16 30 C -0.06 -0.54 0.82 -150.75 -0.12 -0.67 16 31 C -0.13 -0.88 8.94 37.16 0.33 -0.55 16 32 C 0.06 0.68 4.92 -2.29 -0.01 0.67 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.95 7.25 -51.93 -0.38 0.57 16 35 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.08 1.27 7.27 -51.93 -0.38 0.89 16 38 H 0.35 6.19 9.04 45.56 0.41 6.60 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 0.93 5.39 -51.93 -0.28 0.65 16 41 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 42 H 0.12 1.39 8.01 -52.48 -0.42 0.97 16 43 H 0.13 1.38 8.01 -52.49 -0.42 0.96 16 44 H 0.08 0.46 7.54 -51.93 -0.39 0.06 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.34 7.54 -51.93 -0.39 -0.05 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 50 H 0.08 1.16 4.84 -51.93 -0.25 0.90 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -33.34 380.13 -11.13 -44.47 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.14 Total: 7.36 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -4.99 Total: -9.97 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.19 Total: -52.16 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.34 Total: -12.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.59 Total: 17.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.34 -11.13 -44.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121394343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.305 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds