Wall clock time and date at job start Wed Apr 1 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36732 * 127.14180 * 2 1 4 4 C 1.50703 * 126.34510 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47058 * 89.99919 * 4 3 2 6 6 H 1.08999 * 109.46818 * 55.00118 * 5 4 3 7 7 O 1.42900 * 109.47066 * 295.00083 * 5 4 3 8 8 C 1.50697 * 109.47091 * 174.99958 * 5 4 3 9 9 H 1.07999 * 120.00136 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00018 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00080 * 180.02562 * 10 8 5 12 12 Si 1.86807 * 119.99820 * 0.02562 * 10 8 5 13 13 H 1.48497 * 109.47061 * 89.99821 * 12 10 8 14 14 H 1.48500 * 109.46728 * 209.99715 * 12 10 8 15 15 H 1.48498 * 109.47122 * 329.99826 * 12 10 8 16 16 N 1.30293 * 107.30639 * 179.97438 * 3 2 1 17 17 N 1.28522 * 110.05816 * 0.02562 * 16 3 2 18 18 C 1.31220 * 109.85573 * 359.97438 * 17 16 3 19 19 N 1.38583 * 126.47440 * 180.26220 * 18 17 16 20 20 C 1.48491 * 111.00087 * 115.07252 * 19 18 17 21 21 C 1.54229 * 104.77801 * 200.61486 * 20 19 18 22 22 H 1.08996 * 113.60580 * 259.98164 * 21 20 19 23 23 C 1.56102 * 107.90521 * 133.81758 * 21 20 19 24 24 H 1.09006 * 116.88207 * 85.75322 * 23 21 20 25 25 C 1.53352 * 104.15287 * 315.98440 * 23 21 20 26 26 C 1.31784 * 108.42498 * 289.74589 * 25 23 21 27 27 C 1.53348 * 108.41538 * 0.02562 * 26 25 23 28 28 H 1.09003 * 116.93139 * 199.99536 * 27 26 25 29 29 C 1.57219 * 99.83950 * 326.69175 * 27 26 25 30 30 C 1.55765 * 104.76690 * 24.00245 * 21 20 19 31 31 C 1.53000 * 113.81183 * 236.11527 * 30 21 20 32 32 C 1.48501 * 110.99370 * 359.69375 * 19 18 17 33 33 H 1.08996 * 109.47254 * 270.04571 * 1 2 3 34 34 H 1.08997 * 109.46866 * 30.04177 * 1 2 3 35 35 H 1.09001 * 109.47302 * 150.04334 * 1 2 3 36 36 H 1.08998 * 109.47322 * 209.99884 * 4 3 2 37 37 H 1.09004 * 109.47301 * 330.00079 * 4 3 2 38 38 H 0.96699 * 114.00642 * 299.99917 * 7 5 4 39 39 H 0.97003 * 119.99982 * 180.02562 * 11 10 8 40 40 H 1.09002 * 110.37737 * 319.44253 * 20 19 18 41 41 H 1.08996 * 110.37359 * 81.78816 * 20 19 18 42 42 H 1.08003 * 125.78731 * 109.73739 * 25 23 21 43 43 H 1.07998 * 125.79604 * 180.02562 * 26 25 23 44 44 H 1.09007 * 112.52389 * 165.44670 * 29 27 26 45 45 H 1.08993 * 112.52810 * 293.31260 * 29 27 26 46 46 H 1.09000 * 109.47057 * 180.33307 * 31 30 21 47 47 H 1.08998 * 109.47576 * 300.33724 * 31 30 21 48 48 H 1.09004 * 109.46905 * 60.33972 * 31 30 21 49 49 H 1.09004 * 110.37457 * 278.22829 * 32 19 18 50 50 H 1.08994 * 110.38085 * 40.58628 * 32 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8622 2.5348 -0.0005 5 6 1.7167 3.0242 1.4418 6 1 2.6472 2.8469 1.9812 7 8 0.6533 2.3148 2.0805 8 6 1.4086 4.4993 1.4431 9 1 1.3245 5.0342 0.5087 10 6 1.2330 5.1658 2.6372 11 7 0.9636 6.4531 2.6384 12 14 1.3778 4.2404 4.2535 13 1 2.7859 4.2818 4.7232 14 1 0.4987 4.8756 5.2679 15 1 0.9638 2.8283 4.0542 16 7 3.5162 0.6478 0.0006 17 7 3.5212 -0.6374 0.0004 18 6 2.2888 -1.0878 0.0002 19 7 1.8976 -2.4173 0.0051 20 6 1.1817 -2.7568 1.2610 21 6 1.2842 -4.2919 1.3696 22 1 0.3837 -4.8134 1.0456 23 6 1.7006 -4.6427 2.8326 24 1 0.8989 -4.7278 3.5663 25 6 2.8138 -3.6389 3.1566 26 6 3.8794 -3.9558 2.4490 27 6 3.5496 -5.1923 1.6040 28 1 4.3924 -5.7732 1.2292 29 6 2.5653 -5.9314 2.5821 30 6 2.5440 -4.6658 0.5332 31 6 2.2682 -5.6793 -0.5793 32 6 3.0774 -3.3191 0.0034 33 1 -0.3633 0.0008 1.0276 34 1 -0.3633 0.8896 -0.5145 35 1 -0.3634 -0.8904 -0.5132 36 1 2.6124 3.1360 -0.5142 37 1 0.9058 2.6301 -0.5147 38 1 -0.2068 2.4269 1.6530 39 1 0.8404 6.9221 3.4785 40 1 1.6667 -2.2827 2.1143 41 1 0.1379 -2.4496 1.1977 42 1 2.7373 -2.8123 3.8475 43 1 4.8245 -3.4334 2.4618 44 1 2.0016 -6.7229 2.0880 45 1 3.0613 -6.2833 3.4866 46 1 3.1941 -5.8937 -1.1131 47 1 1.8782 -6.5994 -0.1442 48 1 1.5360 -5.2667 -1.2733 49 1 3.4642 -3.4360 -1.0090 50 1 3.8525 -2.9313 0.6643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121394343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:34 Heat of formation + Delta-G solvation = 73.121021 kcal Electronic energy + Delta-G solvation = -31857.545546 eV Core-core repulsion = 27886.899672 eV Total energy + Delta-G solvation = -3970.645874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.06889 -42.85296 -38.45767 -37.86424 -35.85841 -34.45434 -33.83037 -32.89319 -31.83013 -30.17742 -29.07854 -28.35316 -27.48704 -27.10758 -26.73112 -23.51064 -23.33585 -21.83232 -21.66087 -21.22480 -20.61290 -19.47553 -18.59429 -18.13854 -17.56864 -17.39286 -16.99434 -16.90948 -16.51027 -16.20065 -15.89056 -15.28675 -15.16357 -14.90540 -14.77997 -14.29970 -14.28057 -13.82025 -13.77681 -13.60784 -13.48684 -13.28395 -13.09285 -13.02381 -12.89026 -12.75700 -12.53244 -12.38341 -12.23463 -12.10679 -12.03060 -11.98447 -11.57863 -11.43599 -11.38657 -11.18903 -11.10683 -11.08462 -10.89990 -10.77659 -10.27379 -9.79556 -9.27905 -8.37831 -6.51835 0.75712 1.22383 1.32937 1.35787 1.41494 1.68380 1.77072 2.39223 2.72547 2.99630 3.23539 3.30330 3.42680 3.55658 3.76601 3.86599 3.94593 3.94766 3.99887 4.04130 4.16658 4.20196 4.27715 4.30031 4.34605 4.41033 4.41812 4.48285 4.54319 4.62425 4.63192 4.72121 4.81796 4.88898 4.90663 4.92282 5.05726 5.06271 5.08576 5.13277 5.20298 5.24053 5.28379 5.37276 5.38541 5.44092 5.45111 5.57240 5.60872 5.92558 6.05782 6.18368 6.61109 7.14151 7.30462 7.74500 8.75795 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003165 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.332748 B = 8844.311998 C = 9503.689780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.468 5.468 3 C 0.201 3.799 4 C -0.038 4.038 5 C 0.217 3.783 6 H 0.035 0.965 7 O -0.579 6.579 8 C -0.559 4.559 9 H 0.051 0.949 10 C 0.037 3.963 11 N -0.933 5.933 12 Si 0.930 3.070 13 H -0.297 1.297 14 H -0.293 1.293 15 H -0.207 1.207 16 N -0.337 5.337 17 N -0.359 5.359 18 C 0.340 3.660 19 N -0.420 5.420 20 C 0.034 3.966 21 C -0.072 4.072 22 H 0.124 0.876 23 C -0.067 4.067 24 H 0.118 0.882 25 C -0.183 4.183 26 C -0.173 4.173 27 C -0.064 4.064 28 H 0.114 0.886 29 C -0.106 4.106 30 C -0.053 4.053 31 C -0.121 4.121 32 C 0.052 3.948 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.370 0.630 39 H 0.267 0.733 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -30.824 -3.486 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.161 5.161 3 C -0.068 4.068 4 C -0.078 4.078 5 C 0.158 3.842 6 H 0.053 0.947 7 O -0.386 6.386 8 C -0.597 4.597 9 H 0.069 0.931 10 C -0.164 4.164 11 N -0.572 5.572 12 Si 0.755 3.245 13 H -0.224 1.224 14 H -0.220 1.220 15 H -0.129 1.129 16 N -0.176 5.176 17 N -0.203 5.203 18 C -0.018 4.018 19 N -0.144 5.144 20 C -0.092 4.092 21 C -0.091 4.091 22 H 0.142 0.858 23 C -0.085 4.085 24 H 0.136 0.864 25 C -0.201 4.201 26 C -0.191 4.191 27 C -0.082 4.082 28 H 0.132 0.868 29 C -0.143 4.143 30 C -0.054 4.054 31 C -0.179 4.179 32 C -0.074 4.074 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.219 0.781 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.098 -30.938 -3.502 31.289 hybrid contribution -0.597 1.637 1.002 2.010 sum -3.695 -29.301 -2.500 29.639 Atomic orbital electron populations 1.22414 0.73039 1.06430 1.05193 1.46102 1.09957 1.04502 1.55521 1.25011 0.86423 0.92521 1.02840 1.20669 1.03260 0.83689 1.00209 1.19363 0.87384 0.89122 0.88326 0.94682 1.86653 1.20067 1.73809 1.58115 1.21707 1.50169 0.93923 0.93853 0.93075 1.25694 0.92701 0.95003 1.02991 1.70050 1.48646 1.10191 1.28343 0.86127 0.76916 0.82984 0.78439 1.22441 1.22004 1.12921 1.73868 1.19382 1.03314 1.21023 1.74379 1.17762 1.03480 1.24692 1.23083 0.86604 0.89039 1.03047 1.62358 1.21925 0.95005 1.35120 1.23577 0.99424 0.97812 0.88422 1.23179 0.98948 0.92157 0.94803 0.85788 1.23041 0.96156 0.93834 0.95484 0.86416 1.24064 0.96250 0.99968 0.99856 1.24070 0.98110 0.99405 0.97549 1.23047 0.97434 0.93728 0.94016 0.86794 1.24017 0.95527 0.96176 0.98574 1.22496 0.94437 0.93197 0.95262 1.21582 1.02211 0.97720 0.96339 1.23400 0.90639 0.91271 1.02125 0.89106 0.87611 0.87337 0.89018 0.87754 0.78125 0.92361 0.93681 0.88481 0.87800 0.87519 0.88167 0.90478 0.91942 0.90072 0.92164 0.90480 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 9.84 127.77 1.26 2.69 16 2 N -0.47 -14.49 3.21 -538.18 -1.73 -16.21 16 3 C 0.20 7.64 7.09 137.64 0.98 8.62 16 4 C -0.04 -1.43 5.21 29.85 0.16 -1.28 16 5 C 0.22 9.69 2.30 29.85 0.07 9.75 16 6 H 0.04 1.77 7.57 -2.39 -0.02 1.76 16 7 O -0.58 -23.00 9.69 -148.98 -1.44 -24.44 16 8 C -0.56 -29.89 9.34 25.60 0.24 -29.65 16 9 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 10 C 0.04 2.07 5.47 84.66 0.46 2.53 16 11 N -0.93 -56.54 13.96 21.45 0.30 -56.24 16 12 Si 0.93 44.97 26.99 68.60 1.85 46.82 16 13 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 15 H -0.21 -9.48 5.31 99.48 0.53 -8.96 16 16 N -0.34 -14.70 12.18 -49.54 -0.60 -15.30 16 17 N -0.36 -14.46 10.98 -58.00 -0.64 -15.10 16 18 C 0.34 11.17 6.99 260.11 1.82 12.99 16 19 N -0.42 -10.41 5.42 -692.95 -3.76 -14.16 16 20 C 0.03 0.69 5.21 86.41 0.45 1.14 16 21 C -0.07 -0.99 3.65 -8.35 -0.03 -1.02 16 22 H 0.12 1.15 8.02 -2.39 -0.02 1.13 16 23 C -0.07 -0.90 4.98 -8.12 -0.04 -0.94 16 24 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 25 C -0.18 -3.75 7.54 25.80 0.19 -3.55 16 26 C -0.17 -3.59 7.54 25.79 0.19 -3.40 16 27 C -0.06 -0.91 4.50 -8.13 -0.04 -0.95 16 28 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 29 C -0.11 -1.11 6.64 33.55 0.22 -0.89 16 30 C -0.05 -0.78 0.82 -49.75 -0.04 -0.82 16 31 C -0.12 -1.25 8.94 71.98 0.64 -0.61 16 32 C 0.05 1.21 4.92 86.41 0.43 1.64 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.85 7.25 -2.39 -0.02 1.83 16 35 H 0.11 1.71 8.07 -2.39 -0.02 1.69 16 36 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.10 3.27 7.27 -2.38 -0.02 3.25 16 38 H 0.37 11.95 9.04 -74.06 -0.67 11.28 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.04 1.17 5.39 -2.39 -0.01 1.15 16 41 H 0.10 1.65 7.45 -2.39 -0.02 1.63 16 42 H 0.10 2.47 8.01 -2.91 -0.02 2.44 16 43 H 0.11 2.55 8.01 -2.91 -0.02 2.53 16 44 H 0.10 0.64 7.54 -2.38 -0.02 0.63 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 0.52 7.54 -2.39 -0.02 0.50 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.08 1.86 7.91 -2.38 -0.02 1.84 16 50 H 0.06 1.74 4.84 -2.39 -0.01 1.73 16 Total: -1.00 -74.96 380.13 1.05 -73.91 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.11 Total: 24.49 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 6.96 Total: -3.75 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -6.42 Total: -117.02 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.44 Total: -24.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.85 Total: 46.82 kcal Total: -74.96 1.05 -73.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121394343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.027 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds