Wall clock time and date at job start Wed Apr 1 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 110.67439 * 2 1 4 4 O 1.21284 * 119.99826 * 120.70306 * 3 2 1 5 5 N 1.34776 * 119.99817 * 300.69748 * 3 2 1 6 6 C 1.46503 * 119.99339 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.46632 * 180.02562 * 6 5 3 8 8 C 1.40074 * 126.12606 * 260.02512 * 7 6 5 9 9 N 1.31013 * 108.25661 * 180.02562 * 8 7 6 10 10 N 1.39744 * 108.17586 * 0.16596 * 9 8 7 11 11 C 1.34643 * 126.12527 * 79.71721 * 7 6 5 12 12 C 1.51037 * 127.90766 * 359.47375 * 11 7 6 13 13 N 1.47510 * 106.99390 * 169.50212 * 12 11 7 14 14 C 1.36931 * 121.00980 * 222.96281 * 13 12 11 15 15 H 1.08000 * 120.00020 * 155.20730 * 14 13 12 16 16 C 1.38810 * 120.00187 * 335.19851 * 14 13 12 17 17 N 1.31618 * 120.00128 * 159.85112 * 16 14 13 18 18 Si 1.86800 * 120.00200 * 339.85781 * 16 14 13 19 19 H 1.48498 * 109.47195 * 88.41215 * 18 16 14 20 20 H 1.48504 * 109.47083 * 208.41050 * 18 16 14 21 21 H 1.48500 * 109.47023 * 328.41354 * 18 16 14 22 22 C 1.47090 * 117.97500 * 42.98721 * 13 12 11 23 23 C 1.46556 * 127.32563 * 179.38424 * 10 9 8 24 24 C 1.54890 * 110.75552 * 236.76106 * 2 1 3 25 25 C 1.54751 * 103.96875 * 279.52027 * 24 2 1 26 26 H 1.09004 * 117.71335 * 116.80069 * 25 24 2 27 27 C 1.55463 * 118.33709 * 272.82048 * 25 24 2 28 28 C 1.53004 * 59.84112 * 93.34159 * 27 25 24 29 29 H 1.08999 * 119.29507 * 111.71184 * 28 27 25 30 30 C 1.54270 * 118.19670 * 265.85388 * 28 27 25 31 31 H 1.09006 * 109.46868 * 59.29734 * 1 2 3 32 32 H 1.09003 * 109.47098 * 299.30361 * 1 2 3 33 33 H 1.09001 * 109.47654 * 179.29972 * 1 2 3 34 34 H 0.96998 * 120.00129 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47853 * 299.99762 * 6 5 3 36 36 H 1.09004 * 109.47293 * 60.00836 * 6 5 3 37 37 H 1.08002 * 125.87479 * 0.03626 * 8 7 6 38 38 H 1.08996 * 109.95183 * 288.87441 * 12 11 7 39 39 H 1.09006 * 109.94868 * 50.13603 * 12 11 7 40 40 H 0.96994 * 120.00341 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.51103 * 56.38059 * 22 13 12 42 42 H 1.08999 * 109.50405 * 176.47469 * 22 13 12 43 43 H 1.08994 * 109.51010 * 281.41932 * 23 10 9 44 44 H 1.08999 * 109.50590 * 41.56144 * 23 10 9 45 45 H 1.09008 * 110.48551 * 38.31434 * 24 2 1 46 46 H 1.08998 * 110.48662 * 160.95128 * 24 2 1 47 47 H 1.09002 * 118.06285 * 346.20733 * 27 25 24 48 48 H 1.09001 * 117.18657 * 200.86611 * 27 25 24 49 49 H 1.08998 * 110.48859 * 330.32193 * 30 28 27 50 50 H 1.08996 * 110.59603 * 207.73367 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.7779 1.7879 0.9031 5 7 1.7424 2.2508 -1.0037 6 6 2.2593 3.6216 -1.0033 7 6 1.7576 4.3478 -2.2248 8 6 2.4755 4.5691 -3.4070 9 7 1.7078 5.2332 -4.2352 10 7 0.4805 5.4587 -3.6063 11 6 0.5369 4.8952 -2.3773 12 6 -0.6055 4.9056 -1.3894 13 7 -1.6215 5.8369 -1.9150 14 6 -2.2584 6.7250 -1.0900 15 1 -2.6748 7.6354 -1.4952 16 6 -2.3692 6.4551 0.2671 17 7 -2.6065 7.4331 1.1154 18 14 -2.1811 4.7039 0.8896 19 1 -0.7490 4.4296 1.1707 20 1 -2.9715 4.5338 2.1353 21 1 -2.6734 3.7563 -0.1423 22 6 -1.9300 5.7821 -3.3521 23 6 -0.6784 6.1730 -4.1493 24 6 2.0789 -0.7939 -1.2114 25 6 1.9790 -2.2724 -0.7654 26 1 1.3178 -2.9289 -1.3310 27 6 3.1661 -2.8850 0.0298 28 6 1.9789 -2.2697 0.7734 29 1 1.3113 -2.9177 1.3413 30 6 2.0788 -0.7938 1.2115 31 1 -0.3633 0.5247 -0.8837 32 1 -0.3633 0.5030 0.8962 33 1 -0.3634 -1.0276 -0.0126 34 1 1.1697 1.9485 -1.7258 35 1 1.9166 4.1389 -0.1072 36 1 3.3490 3.5991 -1.0156 37 1 3.4878 4.2473 -3.6023 38 1 -1.0289 3.9053 -1.2998 39 1 -0.2531 5.2499 -0.4170 40 1 -2.6835 7.2445 2.0637 41 1 -2.2366 4.7710 -3.6204 42 1 -2.7370 6.4792 -3.5779 43 1 -0.5107 7.2475 -4.0763 44 1 -0.8198 5.8961 -5.1940 45 1 1.4648 -0.6156 -2.0943 46 1 3.1165 -0.5232 -1.4064 47 1 4.1085 -2.3377 0.0472 48 1 3.2540 -3.9715 0.0351 49 1 3.1165 -0.5232 1.4064 50 1 1.4662 -0.6137 2.0948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128415825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:50 Heat of formation + Delta-G solvation = 93.901725 kcal Electronic energy + Delta-G solvation = -31270.236016 eV Core-core repulsion = 27300.491261 eV Total energy + Delta-G solvation = -3969.744755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26730 -40.65937 -38.47261 -36.65430 -34.97021 -33.55236 -32.94807 -31.66668 -30.53339 -29.24218 -28.45639 -27.13947 -26.29688 -25.31295 -23.97105 -23.09039 -21.84203 -21.11598 -20.25112 -19.96080 -19.27985 -18.80889 -17.08850 -16.86366 -16.31025 -16.18230 -15.88825 -15.33796 -15.28163 -14.85439 -14.45280 -14.15507 -14.02591 -13.98586 -13.63627 -13.42736 -13.24396 -12.93071 -12.89991 -12.58205 -12.43475 -12.30394 -12.20412 -11.91839 -11.78630 -11.68215 -11.51461 -11.45842 -11.22505 -10.99522 -10.83540 -10.55569 -10.48049 -10.32573 -10.22608 -9.97821 -9.73070 -9.60010 -8.94253 -8.90341 -8.86782 -8.18304 -7.38169 -6.14958 -3.56225 2.16407 2.69854 2.74795 2.80145 3.18962 3.30153 3.32673 3.36630 3.55281 4.24743 4.32405 4.32940 4.52599 4.53963 4.74475 4.76947 4.85175 4.91881 4.94982 5.09048 5.13581 5.17962 5.24301 5.32826 5.36640 5.43232 5.49521 5.51051 5.51853 5.57364 5.61338 5.66249 5.74019 5.86935 5.91076 5.93915 5.94970 5.97824 6.01212 6.03179 6.12019 6.16501 6.18949 6.31355 6.42003 6.55608 6.87587 7.30014 7.56985 7.63241 8.01239 8.08978 8.31961 8.61383 9.45003 9.74651 10.99982 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.003750 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.405554 B = 7465.759311 C = 8879.527100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C 0.523 3.477 4 O -0.542 6.542 5 N -0.720 5.720 6 C 0.204 3.796 7 C -0.280 4.280 8 C 0.059 3.941 9 N -0.308 5.308 10 N -0.353 5.353 11 C 0.121 3.879 12 C 0.177 3.823 13 N -0.606 5.606 14 C -0.273 4.273 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.897 5.897 18 Si 0.873 3.127 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.271 1.271 22 C 0.132 3.868 23 C 0.112 3.888 24 C -0.080 4.080 25 C -0.166 4.166 26 H 0.112 0.888 27 C -0.155 4.155 28 C -0.160 4.160 29 H 0.109 0.891 30 C -0.073 4.073 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.267 0.733 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 -17.562 -6.916 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C 0.309 3.691 4 O -0.419 6.419 5 N -0.371 5.371 6 C 0.081 3.919 7 C -0.293 4.293 8 C -0.128 4.128 9 N -0.128 5.128 10 N -0.134 5.134 11 C -0.011 4.011 12 C 0.050 3.950 13 N -0.329 5.329 14 C -0.401 4.401 15 H 0.111 0.889 16 C -0.169 4.169 17 N -0.539 5.539 18 Si 0.702 3.298 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.196 1.196 22 C 0.004 3.996 23 C -0.011 4.011 24 C -0.118 4.118 25 C -0.184 4.184 26 H 0.130 0.870 27 C -0.192 4.192 28 C -0.178 4.178 29 H 0.127 0.873 30 C -0.110 4.110 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.196 0.804 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.099 0.901 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.869 -16.516 -7.325 19.706 hybrid contribution -0.166 -1.329 0.823 1.572 sum 7.703 -17.844 -6.502 20.494 Atomic orbital electron populations 1.21774 0.91923 1.02936 1.02776 1.21946 0.97335 0.92015 0.97497 1.20377 0.80361 0.86791 0.81601 1.90689 1.37648 1.77601 1.35928 1.46251 1.52204 1.12923 1.25756 1.19376 0.97996 0.79933 0.94631 1.19454 0.95313 1.15325 0.99183 1.23695 0.99554 0.98097 0.91442 1.77225 0.91810 1.21838 1.21935 1.48521 1.11422 1.42288 1.11130 1.21812 0.97182 0.93804 0.88330 1.20520 0.84954 0.94740 0.94783 1.44504 1.42321 1.42116 1.03974 1.18862 1.33304 0.98734 0.89166 0.88894 1.25210 0.98609 0.97194 0.95915 1.69801 1.50770 1.30657 1.02647 0.87163 0.77603 0.86810 0.78208 1.20695 1.22406 1.19579 1.21378 0.93475 1.00377 0.84366 1.22604 0.83360 0.96643 0.98460 1.22033 1.01483 0.91958 0.96280 1.23639 1.02932 0.97086 0.94741 0.86992 1.23450 0.93147 0.99928 1.02689 1.23243 1.02308 0.97596 0.94685 0.87288 1.21832 1.02471 0.90581 0.96155 0.92018 0.91835 0.91103 0.76689 0.91040 0.90822 0.80427 0.92812 0.88165 0.92292 0.94090 0.88748 0.89904 0.89752 0.90419 0.90874 0.88851 0.88484 0.90051 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.40 37.16 0.31 -1.13 16 2 C -0.08 -0.95 0.76 -153.67 -0.12 -1.06 16 3 C 0.52 7.54 6.53 -10.99 -0.07 7.47 16 4 O -0.54 -9.77 15.76 5.55 0.09 -9.68 16 5 N -0.72 -9.81 5.44 -61.47 -0.33 -10.15 16 6 C 0.20 3.10 5.95 -5.19 -0.03 3.07 16 7 C -0.28 -4.51 5.46 -105.20 -0.57 -5.09 16 8 C 0.06 0.88 11.97 -17.21 -0.21 0.68 16 9 N -0.31 -5.28 12.61 30.70 0.39 -4.90 16 10 N -0.35 -6.29 4.03 -56.83 -0.23 -6.52 16 11 C 0.12 2.23 6.71 -82.16 -0.55 1.68 16 12 C 0.18 3.66 4.24 -4.48 -0.02 3.64 16 13 N -0.61 -13.30 2.80 -172.83 -0.48 -13.79 16 14 C -0.27 -7.13 10.10 -15.06 -0.15 -7.28 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.03 0.86 5.26 -17.43 -0.09 0.76 16 17 N -0.90 -26.39 13.97 55.49 0.78 -25.61 16 18 Si 0.87 21.01 24.15 -169.99 -4.11 16.90 16 19 H -0.28 -6.60 6.47 56.52 0.37 -6.24 16 20 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.23 6.61 56.52 0.37 -5.86 16 22 C 0.13 2.26 6.51 -3.48 -0.02 2.24 16 23 C 0.11 1.77 7.45 -3.77 -0.03 1.74 16 24 C -0.08 -0.73 5.59 -24.81 -0.14 -0.87 16 25 C -0.17 -1.36 6.64 -87.93 -0.58 -1.94 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 C -0.16 -1.22 10.22 -25.42 -0.26 -1.48 16 28 C -0.16 -1.40 6.47 -89.50 -0.58 -1.98 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 30 C -0.07 -0.80 5.16 -25.07 -0.13 -0.93 16 31 H 0.06 0.63 7.61 -51.93 -0.40 0.23 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 34 H 0.40 4.79 7.92 -40.82 -0.32 4.47 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.05 1.09 6.41 -51.93 -0.33 0.76 16 39 H 0.10 2.32 5.12 -51.93 -0.27 2.05 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 0.62 8.06 -51.92 -0.42 0.20 16 46 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 50 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -31.86 392.34 -9.27 -41.13 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.03 Total: 7.19 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.24 Total: -0.49 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.11 Total: -60.97 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.11 Total: 16.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.86 -9.27 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128415825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.033 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds