Wall clock time and date at job start Wed Apr 1 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 110.67439 * 2 1 4 4 O 1.21284 * 119.99826 * 120.70306 * 3 2 1 5 5 N 1.34776 * 119.99817 * 300.69748 * 3 2 1 6 6 C 1.46503 * 119.99339 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.46632 * 180.02562 * 6 5 3 8 8 C 1.40074 * 126.12606 * 260.02512 * 7 6 5 9 9 N 1.31013 * 108.25661 * 180.02562 * 8 7 6 10 10 N 1.39744 * 108.17586 * 0.16596 * 9 8 7 11 11 C 1.34643 * 126.12527 * 79.71721 * 7 6 5 12 12 C 1.51037 * 127.90766 * 359.47375 * 11 7 6 13 13 N 1.47510 * 106.99390 * 169.50212 * 12 11 7 14 14 C 1.36931 * 121.00980 * 222.96281 * 13 12 11 15 15 H 1.08000 * 120.00020 * 155.20730 * 14 13 12 16 16 C 1.38810 * 120.00187 * 335.19851 * 14 13 12 17 17 N 1.31618 * 120.00128 * 159.85112 * 16 14 13 18 18 Si 1.86800 * 120.00200 * 339.85781 * 16 14 13 19 19 H 1.48498 * 109.47195 * 88.41215 * 18 16 14 20 20 H 1.48504 * 109.47083 * 208.41050 * 18 16 14 21 21 H 1.48500 * 109.47023 * 328.41354 * 18 16 14 22 22 C 1.47090 * 117.97500 * 42.98721 * 13 12 11 23 23 C 1.46556 * 127.32563 * 179.38424 * 10 9 8 24 24 C 1.54890 * 110.75552 * 236.76106 * 2 1 3 25 25 C 1.54751 * 103.96875 * 279.52027 * 24 2 1 26 26 H 1.09004 * 117.71335 * 116.80069 * 25 24 2 27 27 C 1.55463 * 118.33709 * 272.82048 * 25 24 2 28 28 C 1.53004 * 59.84112 * 93.34159 * 27 25 24 29 29 H 1.08999 * 119.29507 * 111.71184 * 28 27 25 30 30 C 1.54270 * 118.19670 * 265.85388 * 28 27 25 31 31 H 1.09006 * 109.46868 * 59.29734 * 1 2 3 32 32 H 1.09003 * 109.47098 * 299.30361 * 1 2 3 33 33 H 1.09001 * 109.47654 * 179.29972 * 1 2 3 34 34 H 0.96998 * 120.00129 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47853 * 299.99762 * 6 5 3 36 36 H 1.09004 * 109.47293 * 60.00836 * 6 5 3 37 37 H 1.08002 * 125.87479 * 0.03626 * 8 7 6 38 38 H 1.08996 * 109.95183 * 288.87441 * 12 11 7 39 39 H 1.09006 * 109.94868 * 50.13603 * 12 11 7 40 40 H 0.96994 * 120.00341 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.51103 * 56.38059 * 22 13 12 42 42 H 1.08999 * 109.50405 * 176.47469 * 22 13 12 43 43 H 1.08994 * 109.51010 * 281.41932 * 23 10 9 44 44 H 1.08999 * 109.50590 * 41.56144 * 23 10 9 45 45 H 1.09008 * 110.48551 * 38.31434 * 24 2 1 46 46 H 1.08998 * 110.48662 * 160.95128 * 24 2 1 47 47 H 1.09002 * 118.06285 * 346.20733 * 27 25 24 48 48 H 1.09001 * 117.18657 * 200.86611 * 27 25 24 49 49 H 1.08998 * 110.48859 * 330.32193 * 30 28 27 50 50 H 1.08996 * 110.59603 * 207.73367 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.7779 1.7879 0.9031 5 7 1.7424 2.2508 -1.0037 6 6 2.2593 3.6216 -1.0033 7 6 1.7576 4.3478 -2.2248 8 6 2.4755 4.5691 -3.4070 9 7 1.7078 5.2332 -4.2352 10 7 0.4805 5.4587 -3.6063 11 6 0.5369 4.8952 -2.3773 12 6 -0.6055 4.9056 -1.3894 13 7 -1.6215 5.8369 -1.9150 14 6 -2.2584 6.7250 -1.0900 15 1 -2.6748 7.6354 -1.4952 16 6 -2.3692 6.4551 0.2671 17 7 -2.6065 7.4331 1.1154 18 14 -2.1811 4.7039 0.8896 19 1 -0.7490 4.4296 1.1707 20 1 -2.9715 4.5338 2.1353 21 1 -2.6734 3.7563 -0.1423 22 6 -1.9300 5.7821 -3.3521 23 6 -0.6784 6.1730 -4.1493 24 6 2.0789 -0.7939 -1.2114 25 6 1.9790 -2.2724 -0.7654 26 1 1.3178 -2.9289 -1.3310 27 6 3.1661 -2.8850 0.0298 28 6 1.9789 -2.2697 0.7734 29 1 1.3113 -2.9177 1.3413 30 6 2.0788 -0.7938 1.2115 31 1 -0.3633 0.5247 -0.8837 32 1 -0.3633 0.5030 0.8962 33 1 -0.3634 -1.0276 -0.0126 34 1 1.1697 1.9485 -1.7258 35 1 1.9166 4.1389 -0.1072 36 1 3.3490 3.5991 -1.0156 37 1 3.4878 4.2473 -3.6023 38 1 -1.0289 3.9053 -1.2998 39 1 -0.2531 5.2499 -0.4170 40 1 -2.6835 7.2445 2.0637 41 1 -2.2366 4.7710 -3.6204 42 1 -2.7370 6.4792 -3.5779 43 1 -0.5107 7.2475 -4.0763 44 1 -0.8198 5.8961 -5.1940 45 1 1.4648 -0.6156 -2.0943 46 1 3.1165 -0.5232 -1.4064 47 1 4.1085 -2.3377 0.0472 48 1 3.2540 -3.9715 0.0351 49 1 3.1165 -0.5232 1.4064 50 1 1.4662 -0.6137 2.0948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128415825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:49 Heat of formation + Delta-G solvation = 73.389616 kcal Electronic energy + Delta-G solvation = -31271.125488 eV Core-core repulsion = 27300.491261 eV Total energy + Delta-G solvation = -3970.634227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58596 -41.61112 -39.44782 -38.24875 -36.24223 -34.75798 -34.27065 -33.29245 -32.04114 -30.55363 -29.23884 -27.98067 -27.87137 -26.69161 -25.47204 -24.11735 -23.29324 -21.96454 -21.60901 -20.65307 -20.51609 -20.09886 -18.71929 -18.17867 -17.53587 -17.27799 -16.92511 -16.87400 -16.62843 -16.16621 -15.87535 -15.40002 -15.26434 -15.09712 -14.94251 -14.72524 -14.55478 -14.24684 -14.03399 -13.96119 -13.67442 -13.31007 -13.21852 -13.13175 -13.12207 -13.00785 -12.54677 -12.44477 -12.35178 -12.26972 -12.19025 -11.99009 -11.86811 -11.78962 -11.62175 -10.92970 -10.90967 -10.82442 -10.52219 -10.21578 -10.12218 -9.53347 -9.21294 -8.26282 -5.62801 0.78769 1.24604 1.31977 1.39757 1.49230 1.56054 1.59579 2.31417 2.41544 2.66675 2.83045 3.14827 3.42924 3.50035 3.54718 3.60050 3.78050 3.97385 4.02760 4.06425 4.09001 4.14815 4.15925 4.22699 4.35136 4.37513 4.38976 4.42836 4.43371 4.52914 4.68334 4.74445 4.75038 4.78595 4.85418 4.89238 4.92849 4.95244 5.00064 5.09077 5.10406 5.16691 5.23651 5.33384 5.39173 5.43334 5.64806 5.68553 5.93632 6.03180 6.53178 6.65374 6.73676 7.20221 7.42321 7.79425 8.92296 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.003750 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.405554 B = 7465.759311 C = 8879.527100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C 0.519 3.481 4 O -0.584 6.584 5 N -0.711 5.711 6 C 0.209 3.791 7 C -0.267 4.267 8 C 0.070 3.930 9 N -0.318 5.318 10 N -0.362 5.362 11 C 0.097 3.903 12 C 0.182 3.818 13 N -0.621 5.621 14 C -0.253 4.253 15 H 0.069 0.931 16 C -0.026 4.026 17 N -0.948 5.948 18 Si 0.930 3.070 19 H -0.281 1.281 20 H -0.309 1.309 21 H -0.249 1.249 22 C 0.129 3.871 23 C 0.115 3.885 24 C -0.076 4.076 25 C -0.158 4.158 26 H 0.132 0.868 27 C -0.153 4.153 28 C -0.166 4.166 29 H 0.121 0.879 30 C -0.076 4.076 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.410 0.590 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.217 0.783 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.060 0.940 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -20.631 -9.670 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C 0.306 3.694 4 O -0.464 6.464 5 N -0.362 5.362 6 C 0.085 3.915 7 C -0.279 4.279 8 C -0.116 4.116 9 N -0.138 5.138 10 N -0.143 5.143 11 C -0.034 4.034 12 C 0.056 3.944 13 N -0.345 5.345 14 C -0.382 4.382 15 H 0.086 0.914 16 C -0.222 4.222 17 N -0.593 5.593 18 Si 0.758 3.242 19 H -0.208 1.208 20 H -0.237 1.237 21 H -0.173 1.173 22 C 0.004 3.996 23 C -0.007 4.007 24 C -0.114 4.114 25 C -0.176 4.176 26 H 0.150 0.850 27 C -0.189 4.189 28 C -0.184 4.184 29 H 0.139 0.861 30 C -0.114 4.114 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.246 0.754 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.134 0.866 49 H 0.078 0.922 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.536 -19.618 -10.161 23.685 hybrid contribution -0.288 -0.292 1.604 1.656 sum 8.248 -19.910 -8.557 23.188 Atomic orbital electron populations 1.21798 0.91145 1.04221 1.02167 1.21967 0.97765 0.89901 0.98771 1.21036 0.79556 0.88020 0.80781 1.90668 1.39673 1.78605 1.37500 1.46141 1.52005 1.12124 1.25958 1.19239 0.98719 0.80489 0.93090 1.19525 0.94529 1.14332 0.99554 1.24262 1.00644 0.96564 0.90130 1.77229 0.91700 1.22376 1.22458 1.48695 1.12149 1.42543 1.10926 1.21523 0.97337 0.95924 0.88666 1.20277 0.85568 0.94414 0.94177 1.44600 1.42627 1.41768 1.05552 1.18832 1.31402 0.98437 0.89521 0.91370 1.25783 0.99738 1.00232 0.96415 1.69928 1.54127 1.32539 1.02742 0.86235 0.77201 0.83188 0.77534 1.20766 1.23706 1.17281 1.21607 0.94694 1.01916 0.81428 1.22596 0.82125 0.96128 0.99881 1.22036 1.01274 0.92326 0.95772 1.23718 1.03213 0.96609 0.94050 0.85010 1.23535 0.92548 1.00918 1.01926 1.23191 1.03567 0.96167 0.95427 0.86062 1.21800 1.00932 0.92622 0.96035 0.91323 0.93699 0.88922 0.75433 0.94013 0.89464 0.76654 0.92037 0.91261 0.92747 0.91924 0.87868 0.90675 0.86208 0.88634 0.91550 0.89690 0.86591 0.92177 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.40 71.98 0.60 -2.00 16 2 C -0.08 -1.70 0.76 -51.64 -0.04 -1.74 16 3 C 0.52 14.70 6.53 87.66 0.57 15.28 16 4 O -0.58 -21.52 15.76 -3.04 -0.05 -21.57 16 5 N -0.71 -18.41 5.44 -466.78 -2.54 -20.95 16 6 C 0.21 6.16 5.95 85.63 0.51 6.67 16 7 C -0.27 -8.07 5.46 -20.24 -0.11 -8.18 16 8 C 0.07 1.87 11.97 85.26 1.02 2.89 16 9 N -0.32 -9.90 12.61 -56.79 -0.72 -10.61 16 10 N -0.36 -12.04 4.03 -333.70 -1.34 -13.39 16 11 C 0.10 3.43 6.71 41.30 0.28 3.71 16 12 C 0.18 7.42 4.24 85.55 0.36 7.78 16 13 N -0.62 -26.89 2.80 -700.72 -1.96 -28.85 16 14 C -0.25 -13.43 10.10 84.03 0.85 -12.58 16 15 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 16 C -0.03 -1.45 5.26 84.86 0.45 -1.00 16 17 N -0.95 -58.05 13.97 21.65 0.30 -57.75 16 18 Si 0.93 44.54 24.15 68.60 1.66 46.20 16 19 H -0.28 -13.31 6.47 99.48 0.64 -12.67 16 20 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 21 H -0.25 -10.86 6.61 99.48 0.66 -10.20 16 22 C 0.13 4.18 6.51 86.42 0.56 4.74 16 23 C 0.11 3.34 7.45 86.52 0.64 3.98 16 24 C -0.08 -1.19 5.59 31.84 0.18 -1.01 16 25 C -0.16 -2.06 6.64 -9.05 -0.06 -2.12 16 26 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.15 -2.02 10.22 31.44 0.32 -1.70 16 28 C -0.17 -2.55 6.47 -10.07 -0.07 -2.61 16 29 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 30 C -0.08 -1.64 5.16 31.67 0.16 -1.48 16 31 H 0.07 1.20 7.61 -2.38 -0.02 1.19 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.37 7.50 -2.39 -0.02 1.35 16 34 H 0.41 8.85 7.92 -92.71 -0.73 8.12 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.22 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.06 2.39 6.41 -2.39 -0.02 2.37 16 39 H 0.07 3.25 5.12 -2.38 -0.01 3.24 16 40 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.10 3.11 7.94 -2.39 -0.02 3.10 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.10 1.16 8.06 -2.38 -0.02 1.14 16 46 H 0.07 1.14 8.04 -2.39 -0.02 1.12 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 1.54 7.48 -2.39 -0.02 1.52 16 50 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 Total: -1.00 -71.66 392.34 1.69 -69.97 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.10 Total: 26.33 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.24 Total: 10.62 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.26 Total: -131.56 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.66 Total: 46.20 kcal Total: -71.66 1.69 -69.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128415825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.364 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds