Wall clock time and date at job start Wed Apr 1 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.91432 * 2 1 4 4 O 1.21277 * 120.00127 * 236.03024 * 3 2 1 5 5 N 1.34779 * 120.00009 * 56.03685 * 3 2 1 6 6 C 1.46498 * 120.00304 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47520 * 179.97438 * 6 5 3 8 8 C 1.35316 * 126.03891 * 260.14139 * 7 6 5 9 9 N 1.34947 * 107.74309 * 180.27079 * 8 7 6 10 10 H 0.97003 * 126.03961 * 179.74579 * 9 8 7 11 11 N 1.40082 * 107.92626 * 359.74991 * 9 8 7 12 12 C 1.30836 * 108.20872 * 0.02562 * 11 9 8 13 13 C 1.50699 * 125.90256 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.91347 * 177.57803 * 13 12 11 15 15 C 1.55441 * 111.11912 * 53.57361 * 13 12 11 16 16 C 1.54323 * 102.97188 * 206.46635 * 15 13 12 17 17 N 1.47022 * 107.26753 * 22.19263 * 16 15 13 18 18 C 1.36940 * 125.64951 * 181.03524 * 17 16 15 19 19 H 1.07993 * 120.00626 * 173.96059 * 18 17 16 20 20 C 1.38813 * 119.99685 * 353.96137 * 18 17 16 21 21 N 1.31622 * 120.00459 * 6.83562 * 20 18 17 22 22 Si 1.86803 * 120.00134 * 186.84485 * 20 18 17 23 23 H 1.48493 * 109.47511 * 94.97953 * 22 20 18 24 24 H 1.48504 * 109.47010 * 214.98387 * 22 20 18 25 25 H 1.48501 * 109.46706 * 334.97961 * 22 20 18 26 26 C 1.47424 * 108.70453 * 1.06423 * 17 16 15 27 27 C 1.54639 * 111.07232 * 123.98919 * 2 1 3 28 28 C 1.51099 * 104.72314 * 142.67949 * 27 2 1 29 29 C 1.30530 * 111.10799 * 343.56677 * 28 27 2 30 30 C 1.51103 * 111.09924 * 359.97438 * 29 28 27 31 31 H 1.08991 * 109.47378 * 60.69877 * 1 2 3 32 32 H 1.08994 * 109.47248 * 180.70214 * 1 2 3 33 33 H 1.09004 * 109.47055 * 300.69909 * 1 2 3 34 34 H 0.97008 * 120.00136 * 359.97438 * 5 3 2 35 35 H 1.08995 * 109.47429 * 59.99559 * 6 5 3 36 36 H 1.09002 * 109.46608 * 299.99775 * 6 5 3 37 37 H 1.08001 * 126.12982 * 0.02562 * 8 7 6 38 38 H 1.09002 * 110.70736 * 88.09532 * 15 13 12 39 39 H 1.08999 * 110.71181 * 324.84065 * 15 13 12 40 40 H 1.09004 * 109.88274 * 262.77884 * 16 15 13 41 41 H 1.08993 * 110.01225 * 141.68434 * 16 15 13 42 42 H 0.96996 * 120.00616 * 180.02562 * 21 20 18 43 43 H 1.08998 * 110.36838 * 94.71045 * 26 17 16 44 44 H 1.09001 * 110.36387 * 216.92232 * 26 17 16 45 45 H 1.08999 * 110.38702 * 261.49094 * 27 2 1 46 46 H 1.09003 * 110.38589 * 23.86923 * 27 2 1 47 47 H 1.08004 * 124.44613 * 163.58145 * 28 27 2 48 48 H 1.08000 * 124.44781 * 180.02562 * 29 28 27 49 49 H 1.08994 * 110.38803 * 257.62314 * 30 29 28 50 50 H 1.09003 * 110.38251 * 135.24912 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.8326 1.7647 -0.8710 5 7 1.6994 2.2700 0.9681 6 6 2.2218 3.6386 0.9678 7 6 1.6593 4.3914 2.1460 8 6 0.6225 5.2603 2.1141 9 7 0.4345 5.7224 3.3679 10 1 -0.2389 6.3634 3.6450 11 7 1.3835 5.1131 4.1988 12 6 2.1152 4.3135 3.4660 13 6 3.2558 3.4603 3.9581 14 1 3.6678 2.8572 3.1490 15 6 2.8128 2.5663 5.1500 16 6 4.1315 2.3329 5.9168 17 7 5.0481 3.4224 5.5505 18 6 6.3326 3.5704 6.0014 19 1 6.9598 4.3517 5.5984 20 6 6.8285 2.7160 6.9766 21 7 6.1150 1.6828 7.3712 22 14 8.5087 3.0327 7.7292 23 1 8.3498 3.8041 8.9880 24 1 9.1717 1.7368 8.0230 25 1 9.3402 3.8089 6.7746 26 6 4.3551 4.3298 4.6178 27 6 2.0860 -0.8067 1.1964 28 6 3.3085 -1.5080 0.6518 29 6 3.3080 -1.5078 -0.6535 30 6 2.0847 -0.8068 -1.1970 31 1 -0.3634 0.5029 -0.8961 32 1 -0.3633 -1.0275 0.0126 33 1 -0.3633 0.5247 0.8837 34 1 1.0875 1.9846 1.6647 35 1 1.9298 4.1389 0.0445 36 1 3.3092 3.6123 1.0386 37 1 0.0507 5.5377 1.2408 38 1 2.4026 1.6220 4.7919 39 1 2.0899 3.0891 5.7762 40 1 4.5624 1.3736 5.6298 41 1 3.9464 2.3494 6.9908 42 1 6.4613 1.0860 8.0528 43 1 3.9061 5.1614 5.1608 44 1 5.0490 4.7007 3.8635 45 1 2.3635 -0.1365 2.0100 46 1 1.3506 -1.5354 1.5376 47 1 4.0811 -1.9515 1.2624 48 1 4.0802 -1.9513 -1.2647 49 1 1.3495 -1.5357 -1.5378 50 1 2.3615 -0.1364 -2.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130417488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:34 Heat of formation + Delta-G solvation = 77.593414 kcal Electronic energy + Delta-G solvation = -30773.150056 eV Core-core repulsion = 26802.698120 eV Total energy + Delta-G solvation = -3970.451936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.37386 -40.52027 -37.67049 -37.26403 -35.00907 -33.07731 -32.21620 -31.22295 -30.46982 -29.08397 -28.28915 -27.48813 -26.11451 -25.54971 -24.60232 -22.42061 -22.05641 -20.35059 -19.98811 -19.39537 -18.96263 -18.75950 -17.96738 -16.92165 -16.76308 -16.09752 -15.63658 -15.12288 -14.83548 -14.60925 -14.44095 -14.31161 -14.15274 -13.62344 -13.33276 -13.03770 -12.88711 -12.74023 -12.53444 -12.33998 -12.28931 -12.19734 -12.13827 -11.79302 -11.70685 -11.43919 -11.24196 -10.94525 -10.84197 -10.78965 -10.77328 -10.56379 -10.07553 -9.93445 -9.85488 -9.74936 -9.58642 -9.12889 -9.05938 -8.93163 -8.61300 -8.50678 -6.74963 -5.66132 -2.97819 1.81901 2.24850 2.58916 2.66380 2.85817 3.41918 3.45015 3.50260 3.51978 4.25631 4.47383 4.54121 4.59515 4.66873 4.70583 4.89592 5.11623 5.17274 5.20824 5.26501 5.37494 5.43946 5.51178 5.54607 5.57005 5.58830 5.62220 5.70621 5.77737 5.83598 5.86634 5.89627 5.93589 5.97377 6.01531 6.08189 6.41429 6.43590 6.50788 6.51437 6.58057 6.71101 6.75944 6.83791 7.00125 7.25120 7.53132 7.62054 7.71038 7.76753 7.88988 8.24863 8.32445 9.28548 9.88933 10.55867 11.46144 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009182 B = 0.003471 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.860319 B = 8064.102088 C =10195.242749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C 0.530 3.470 4 O -0.538 6.538 5 N -0.721 5.721 6 C 0.202 3.798 7 C -0.261 4.261 8 C 0.075 3.925 9 N -0.481 5.481 10 H 0.438 0.562 11 N -0.281 5.281 12 C 0.122 3.878 13 C -0.032 4.032 14 H 0.091 0.909 15 C -0.129 4.129 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.150 3.850 27 C -0.088 4.088 28 C -0.168 4.168 29 C -0.161 4.161 30 C -0.082 4.082 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.174 0.826 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.251 0.749 43 H 0.025 0.975 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.493 -1.373 -15.978 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.372 5.372 6 C 0.078 3.922 7 C -0.273 4.273 8 C -0.075 4.075 9 N -0.187 5.187 10 H 0.282 0.718 11 N -0.103 5.103 12 C -0.046 4.046 13 C -0.053 4.053 14 H 0.109 0.891 15 C -0.169 4.169 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.022 3.978 27 C -0.126 4.126 28 C -0.186 4.186 29 C -0.179 4.179 30 C -0.119 4.119 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.191 0.809 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.000 -0.725 -15.289 22.875 hybrid contribution 0.374 0.130 0.155 0.425 sum -16.626 -0.595 -15.134 22.491 Atomic orbital electron populations 1.21765 0.91976 1.02921 1.02450 1.21639 0.96746 0.92513 0.98412 1.20209 0.80641 0.86441 0.81172 1.90678 1.35161 1.78274 1.37341 1.46130 1.49400 1.12372 1.29333 1.19381 0.98537 0.80087 0.94205 1.19958 1.03348 1.08326 0.95673 1.22353 0.98326 0.97163 0.89608 1.46352 1.29218 1.37266 1.05855 0.71833 1.77490 1.03245 1.13073 1.16513 1.22265 0.96119 0.95348 0.90889 1.20981 0.90984 0.95325 0.98033 0.89126 1.22966 1.00249 0.97740 0.95897 1.21153 0.85021 0.91593 0.96909 1.44454 1.11232 1.25405 1.51960 1.19071 0.87246 1.13186 1.15993 0.90458 1.24794 0.98636 0.97589 0.99296 1.69975 1.37543 1.15739 1.33530 0.86136 0.83450 0.77034 0.79417 1.21692 1.21800 1.20638 1.21512 0.91749 0.92475 0.92015 1.21460 0.96202 0.98266 0.96634 1.23249 0.98334 1.00742 0.96302 1.23199 0.98283 1.00217 0.96204 1.21335 0.95526 0.97706 0.97366 0.91949 0.91268 0.91936 0.76522 0.91196 0.90493 0.80875 0.92389 0.91882 0.93948 0.93567 0.93837 0.95687 0.94464 0.90274 0.89570 0.85492 0.85829 0.90259 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.36 37.16 0.31 -0.63 16 2 C -0.09 -0.88 0.84 -153.94 -0.13 -1.01 16 3 C 0.53 6.63 6.51 -10.98 -0.07 6.56 16 4 O -0.54 -8.73 15.53 5.56 0.09 -8.64 16 5 N -0.72 -7.90 5.38 -61.47 -0.33 -8.23 16 6 C 0.20 2.37 5.65 -5.19 -0.03 2.35 16 7 C -0.26 -3.12 5.47 -105.05 -0.57 -3.69 16 8 C 0.07 0.69 11.90 -17.22 -0.20 0.49 16 9 N -0.48 -5.01 7.36 30.45 0.22 -4.78 16 10 H 0.44 3.03 8.96 -182.61 -1.64 1.40 16 11 N -0.28 -4.31 12.39 33.67 0.42 -3.89 16 12 C 0.12 1.86 5.90 -82.41 -0.49 1.37 16 13 C -0.03 -0.57 3.46 -89.47 -0.31 -0.88 16 14 H 0.09 1.62 7.34 -51.93 -0.38 1.24 16 15 C -0.13 -2.47 6.42 -24.74 -0.16 -2.63 16 16 C 0.18 4.39 5.38 -3.06 -0.02 4.38 16 17 N -0.60 -15.90 3.40 -170.08 -0.58 -16.47 16 18 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 19 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -27.40 10.36 55.49 0.57 -26.82 16 22 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.15 3.27 6.68 -2.53 -0.02 3.25 16 27 C -0.09 -0.89 5.93 -26.83 -0.16 -1.05 16 28 C -0.17 -1.90 10.77 -35.70 -0.38 -2.28 16 29 C -0.16 -1.76 10.78 -35.70 -0.38 -2.14 16 30 C -0.08 -0.83 5.72 -26.82 -0.15 -0.98 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.06 0.39 7.46 -51.93 -0.39 0.00 16 34 H 0.40 3.83 7.74 -40.82 -0.32 3.51 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.08 7.78 -51.93 -0.40 0.67 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 40 H 0.04 1.14 7.55 -51.93 -0.39 0.75 16 41 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 46 H 0.09 0.72 7.88 -51.93 -0.41 0.31 16 47 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 49 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 50 H 0.09 1.00 7.01 -51.93 -0.36 0.64 16 LS Contribution 402.42 15.07 6.06 6.06 Total: -1.00 -35.10 402.42 -10.82 -45.92 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -9.24 Total: 3.18 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.02 Total: -3.85 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.31 Total: -60.20 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.10 -10.82 -45.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130417488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.518 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds