Wall clock time and date at job start Wed Apr 1 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.91432 * 2 1 4 4 O 1.21277 * 120.00127 * 236.03024 * 3 2 1 5 5 N 1.34779 * 120.00009 * 56.03685 * 3 2 1 6 6 C 1.46498 * 120.00304 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47520 * 179.97438 * 6 5 3 8 8 C 1.35316 * 126.03891 * 260.14139 * 7 6 5 9 9 N 1.34947 * 107.74309 * 180.27079 * 8 7 6 10 10 H 0.97003 * 126.03961 * 179.74579 * 9 8 7 11 11 N 1.40082 * 107.92626 * 359.74991 * 9 8 7 12 12 C 1.30836 * 108.20872 * 0.02562 * 11 9 8 13 13 C 1.50699 * 125.90256 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.91347 * 177.57803 * 13 12 11 15 15 C 1.55441 * 111.11912 * 53.57361 * 13 12 11 16 16 C 1.54323 * 102.97188 * 206.46635 * 15 13 12 17 17 N 1.47022 * 107.26753 * 22.19263 * 16 15 13 18 18 C 1.36940 * 125.64951 * 181.03524 * 17 16 15 19 19 H 1.07993 * 120.00626 * 173.96059 * 18 17 16 20 20 C 1.38813 * 119.99685 * 353.96137 * 18 17 16 21 21 N 1.31622 * 120.00459 * 6.83562 * 20 18 17 22 22 Si 1.86803 * 120.00134 * 186.84485 * 20 18 17 23 23 H 1.48493 * 109.47511 * 94.97953 * 22 20 18 24 24 H 1.48504 * 109.47010 * 214.98387 * 22 20 18 25 25 H 1.48501 * 109.46706 * 334.97961 * 22 20 18 26 26 C 1.47424 * 108.70453 * 1.06423 * 17 16 15 27 27 C 1.54639 * 111.07232 * 123.98919 * 2 1 3 28 28 C 1.51099 * 104.72314 * 142.67949 * 27 2 1 29 29 C 1.30530 * 111.10799 * 343.56677 * 28 27 2 30 30 C 1.51103 * 111.09924 * 359.97438 * 29 28 27 31 31 H 1.08991 * 109.47378 * 60.69877 * 1 2 3 32 32 H 1.08994 * 109.47248 * 180.70214 * 1 2 3 33 33 H 1.09004 * 109.47055 * 300.69909 * 1 2 3 34 34 H 0.97008 * 120.00136 * 359.97438 * 5 3 2 35 35 H 1.08995 * 109.47429 * 59.99559 * 6 5 3 36 36 H 1.09002 * 109.46608 * 299.99775 * 6 5 3 37 37 H 1.08001 * 126.12982 * 0.02562 * 8 7 6 38 38 H 1.09002 * 110.70736 * 88.09532 * 15 13 12 39 39 H 1.08999 * 110.71181 * 324.84065 * 15 13 12 40 40 H 1.09004 * 109.88274 * 262.77884 * 16 15 13 41 41 H 1.08993 * 110.01225 * 141.68434 * 16 15 13 42 42 H 0.96996 * 120.00616 * 180.02562 * 21 20 18 43 43 H 1.08998 * 110.36838 * 94.71045 * 26 17 16 44 44 H 1.09001 * 110.36387 * 216.92232 * 26 17 16 45 45 H 1.08999 * 110.38702 * 261.49094 * 27 2 1 46 46 H 1.09003 * 110.38589 * 23.86923 * 27 2 1 47 47 H 1.08004 * 124.44613 * 163.58145 * 28 27 2 48 48 H 1.08000 * 124.44781 * 180.02562 * 29 28 27 49 49 H 1.08994 * 110.38803 * 257.62314 * 30 29 28 50 50 H 1.09003 * 110.38251 * 135.24912 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.8326 1.7647 -0.8710 5 7 1.6994 2.2700 0.9681 6 6 2.2218 3.6386 0.9678 7 6 1.6593 4.3914 2.1460 8 6 0.6225 5.2603 2.1141 9 7 0.4345 5.7224 3.3679 10 1 -0.2389 6.3634 3.6450 11 7 1.3835 5.1131 4.1988 12 6 2.1152 4.3135 3.4660 13 6 3.2558 3.4603 3.9581 14 1 3.6678 2.8572 3.1490 15 6 2.8128 2.5663 5.1500 16 6 4.1315 2.3329 5.9168 17 7 5.0481 3.4224 5.5505 18 6 6.3326 3.5704 6.0014 19 1 6.9598 4.3517 5.5984 20 6 6.8285 2.7160 6.9766 21 7 6.1150 1.6828 7.3712 22 14 8.5087 3.0327 7.7292 23 1 8.3498 3.8041 8.9880 24 1 9.1717 1.7368 8.0230 25 1 9.3402 3.8089 6.7746 26 6 4.3551 4.3298 4.6178 27 6 2.0860 -0.8067 1.1964 28 6 3.3085 -1.5080 0.6518 29 6 3.3080 -1.5078 -0.6535 30 6 2.0847 -0.8068 -1.1970 31 1 -0.3634 0.5029 -0.8961 32 1 -0.3633 -1.0275 0.0126 33 1 -0.3633 0.5247 0.8837 34 1 1.0875 1.9846 1.6647 35 1 1.9298 4.1389 0.0445 36 1 3.3092 3.6123 1.0386 37 1 0.0507 5.5377 1.2408 38 1 2.4026 1.6220 4.7919 39 1 2.0899 3.0891 5.7762 40 1 4.5624 1.3736 5.6298 41 1 3.9464 2.3494 6.9908 42 1 6.4613 1.0860 8.0528 43 1 3.9061 5.1614 5.1608 44 1 5.0490 4.7007 3.8635 45 1 2.3635 -0.1365 2.0100 46 1 1.3506 -1.5354 1.5376 47 1 4.0811 -1.9515 1.2624 48 1 4.0802 -1.9513 -1.2647 49 1 1.3495 -1.5357 -1.5378 50 1 2.3615 -0.1364 -2.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130417488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:33 Heat of formation + Delta-G solvation = 54.180923 kcal Electronic energy + Delta-G solvation = -30774.165298 eV Core-core repulsion = 26802.698120 eV Total energy + Delta-G solvation = -3971.467178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35479 -41.40785 -39.03362 -38.56386 -36.00814 -34.88858 -33.10491 -32.63519 -31.38602 -30.89236 -29.18644 -29.07170 -26.94911 -26.60628 -26.29307 -23.51439 -23.23513 -21.96709 -21.36820 -20.32217 -20.07760 -19.78364 -18.84841 -18.80088 -17.76491 -17.03274 -16.82972 -16.50533 -16.32594 -15.89798 -15.75862 -15.53011 -15.21266 -14.93841 -14.15246 -14.09355 -13.91564 -13.83133 -13.73143 -13.67463 -13.58324 -13.50696 -13.20865 -13.06857 -12.98698 -12.87680 -12.72412 -12.29756 -12.13814 -12.05424 -12.01739 -11.93711 -11.73479 -11.66362 -11.56182 -11.25021 -10.82899 -10.69682 -10.26800 -10.00291 -9.78109 -9.52374 -8.89618 -7.86413 -5.21141 0.97065 1.39439 1.44632 1.46934 1.52368 1.56023 1.71887 2.03644 2.48515 2.53561 3.31644 3.49398 3.52626 3.68426 3.73105 3.84709 3.88408 4.03323 4.13959 4.16510 4.18812 4.33312 4.37891 4.54184 4.56175 4.65510 4.70185 4.75299 4.78768 4.81199 4.85399 4.86834 4.99671 5.00317 5.03520 5.06285 5.09579 5.15958 5.19268 5.34842 5.35590 5.44505 5.52863 5.57921 5.67484 5.68404 5.75265 5.98479 6.19280 6.52137 6.65425 6.77737 7.09901 7.33370 7.76084 8.41918 9.24554 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009182 B = 0.003471 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.860319 B = 8064.102088 C =10195.242749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C 0.524 3.476 4 O -0.582 6.582 5 N -0.710 5.710 6 C 0.207 3.793 7 C -0.272 4.272 8 C 0.110 3.890 9 N -0.464 5.464 10 H 0.455 0.545 11 N -0.322 5.322 12 C 0.106 3.894 13 C -0.010 4.010 14 H 0.088 0.912 15 C -0.111 4.111 16 C 0.187 3.813 17 N -0.626 5.626 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.147 3.853 27 C -0.087 4.087 28 C -0.189 4.189 29 C -0.169 4.169 30 C -0.082 4.082 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.012 0.988 41 H 0.009 0.991 42 H 0.248 0.752 43 H 0.018 0.982 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.104 0.896 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.094 -0.583 -17.418 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C 0.312 3.688 4 O -0.462 6.462 5 N -0.361 5.361 6 C 0.083 3.917 7 C -0.284 4.284 8 C -0.041 4.041 9 N -0.172 5.172 10 H 0.302 0.698 11 N -0.145 5.145 12 C -0.061 4.061 13 C -0.032 4.032 14 H 0.106 0.894 15 C -0.150 4.150 16 C 0.062 3.938 17 N -0.352 5.352 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.021 3.979 27 C -0.124 4.124 28 C -0.207 4.207 29 C -0.187 4.187 30 C -0.119 4.119 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.242 0.758 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.122 0.878 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.639 0.094 -16.713 25.789 hybrid contribution 1.161 -0.036 0.576 1.297 sum -18.478 0.059 -16.137 24.533 Atomic orbital electron populations 1.21785 0.89294 1.04360 1.03229 1.21660 0.98719 0.90474 0.97941 1.20742 0.79939 0.87526 0.80628 1.90658 1.37137 1.79249 1.39111 1.46068 1.48934 1.12051 1.29035 1.19255 0.96875 0.80622 0.94933 1.19899 1.04629 1.09780 0.94106 1.22998 0.96638 0.94292 0.90152 1.46328 1.28306 1.36673 1.05854 0.69777 1.77389 1.04734 1.14007 1.18348 1.21785 0.95895 0.95978 0.92481 1.20607 0.90945 0.94625 0.96994 0.89385 1.22756 0.97027 0.99493 0.95724 1.20911 0.87364 0.90073 0.95491 1.44763 1.11105 1.26515 1.52834 1.19450 0.88574 1.13232 1.16404 0.90312 1.25648 1.02565 0.97456 0.99800 1.70189 1.39188 1.16417 1.33797 0.85086 0.79145 0.76803 0.78481 1.21378 1.21782 1.19328 1.21599 0.92656 0.92352 0.91274 1.21493 0.96232 0.98410 0.96253 1.23433 0.99102 1.01470 0.96672 1.23437 0.98876 1.00035 0.96324 1.21375 0.95755 0.97832 0.96932 0.91546 0.89547 0.90783 0.75439 0.89642 0.93489 0.75820 0.89617 0.91736 0.97012 0.97314 0.94286 0.96438 0.94637 0.91555 0.87306 0.85995 0.85376 0.87768 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.36 71.98 0.60 -0.79 16 2 C -0.08 -1.53 0.84 -51.81 -0.04 -1.57 16 3 C 0.52 12.63 6.51 87.66 0.57 13.20 16 4 O -0.58 -18.92 15.53 -3.02 -0.05 -18.97 16 5 N -0.71 -14.37 5.38 -466.79 -2.51 -16.88 16 6 C 0.21 4.54 5.65 85.63 0.48 5.03 16 7 C -0.27 -5.78 5.47 -20.14 -0.11 -5.89 16 8 C 0.11 1.51 11.90 83.54 0.99 2.50 16 9 N -0.46 -7.93 7.36 -57.59 -0.42 -8.35 16 10 H 0.46 4.47 8.96 -213.33 -1.91 2.55 16 11 N -0.32 -9.23 12.39 -47.38 -0.59 -9.82 16 12 C 0.11 3.07 5.90 43.10 0.25 3.32 16 13 C -0.01 -0.38 3.46 -10.05 -0.03 -0.41 16 14 H 0.09 3.20 7.34 -2.39 -0.02 3.19 16 15 C -0.11 -4.27 6.42 31.88 0.20 -4.07 16 16 C 0.19 9.65 5.38 86.73 0.47 10.11 16 17 N -0.63 -34.24 3.40 -692.00 -2.35 -36.59 16 18 C -0.25 -14.65 10.26 84.03 0.86 -13.78 16 19 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 20 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 21 N -0.95 -58.57 10.36 21.65 0.22 -58.35 16 22 Si 0.98 47.32 29.56 68.60 2.03 49.34 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.15 6.62 6.68 86.86 0.58 7.20 16 27 C -0.09 -1.65 5.93 30.53 0.18 -1.46 16 28 C -0.19 -4.24 10.77 26.26 0.28 -3.96 16 29 C -0.17 -3.64 10.78 26.26 0.28 -3.36 16 30 C -0.08 -1.56 5.72 30.54 0.17 -1.38 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 33 H 0.07 0.64 7.46 -2.38 -0.02 0.62 16 34 H 0.41 6.82 7.74 -92.70 -0.72 6.10 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.32 7.78 -2.39 -0.02 1.30 16 37 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.06 2.48 7.86 -2.39 -0.02 2.46 16 40 H 0.01 0.66 7.55 -2.38 -0.02 0.65 16 41 H 0.01 0.50 7.36 -2.39 -0.02 0.49 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.02 0.83 7.94 -2.39 -0.02 0.81 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.43 7.85 -2.39 -0.02 1.41 16 46 H 0.11 1.55 7.88 -2.39 -0.02 1.53 16 47 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 49 H 0.10 1.43 7.89 -2.39 -0.02 1.41 16 50 H 0.07 1.59 7.01 -2.39 -0.02 1.57 16 Total: -1.00 -81.01 402.42 0.88 -80.13 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -1.67 Total: 17.96 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.22 Total: 1.52 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -5.65 Total: -129.98 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -81.01 0.88 -80.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130417488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.315 kcal (2) G-P(sol) polarization free energy of solvation -81.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds