Wall clock time and date at job start Wed Apr 1 2020 03:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30996 * 1
3 3 C 1.51574 * 135.78561 * 2 1
4 4 C 1.53841 * 86.76256 * 154.84178 * 3 2 1
5 5 C 1.52998 * 113.66033 * 139.26837 * 4 3 2
6 6 C 1.50700 * 113.65692 * 270.22227 * 4 3 2
7 7 O 1.21277 * 120.00515 * 358.33000 * 6 4 3
8 8 N 1.34776 * 119.99724 * 178.32777 * 6 4 3
9 9 C 1.46500 * 120.00005 * 179.97438 * 8 6 4
10 10 C 1.50702 * 109.47338 * 180.02562 * 9 8 6
11 11 C 1.35317 * 126.03852 * 259.68997 * 10 9 8
12 12 N 1.34951 * 107.74223 * 179.87266 * 11 10 9
13 13 H 0.97000 * 126.03353 * 180.15428 * 12 11 10
14 14 N 1.40081 * 107.92485 * 0.38972 * 12 11 10
15 15 C 1.30835 * 108.20767 * 359.75992 * 14 12 11
16 16 C 1.50706 * 125.89778 * 180.02562 * 15 14 12
17 17 H 1.09000 * 110.63868 * 183.11795 * 16 15 14
18 18 C 1.55153 * 110.72177 * 59.97415 * 16 15 14
19 19 C 1.54912 * 101.58194 * 206.13718 * 18 16 15
20 20 N 1.47423 * 104.83063 * 37.00566 * 19 18 16
21 21 C 1.36946 * 125.64633 * 155.92214 * 20 19 18
22 22 H 1.08001 * 119.99646 * 342.04654 * 21 20 19
23 23 C 1.38808 * 119.99748 * 162.04966 * 21 20 19
24 24 N 1.31621 * 119.99781 * 156.30704 * 23 21 20
25 25 Si 1.86797 * 120.00212 * 336.30260 * 23 21 20
26 26 H 1.48499 * 109.47358 * 84.67744 * 25 23 21
27 27 H 1.48509 * 109.47038 * 204.67828 * 25 23 21
28 28 H 1.48505 * 109.47060 * 324.67246 * 25 23 21
29 29 C 1.47020 * 108.70531 * 335.87224 * 20 19 18
30 30 C 1.51583 * 135.78291 * 179.97438 * 2 1 3
31 31 H 1.08008 * 119.99780 * 0.02562 * 1 2 3
32 32 H 1.08005 * 120.00274 * 180.02562 * 1 2 3
33 33 H 1.09007 * 113.66640 * 40.37554 * 3 2 1
34 34 H 1.09003 * 113.75446 * 269.31824 * 3 2 1
35 35 H 1.08996 * 109.46948 * 59.99876 * 5 4 3
36 36 H 1.09001 * 109.46966 * 180.02562 * 5 4 3
37 37 H 1.08998 * 109.47010 * 300.00502 * 5 4 3
38 38 H 0.96999 * 120.00541 * 0.02562 * 8 6 4
39 39 H 1.09007 * 109.47004 * 300.00327 * 9 8 6
40 40 H 1.09001 * 109.47182 * 60.00129 * 9 8 6
41 41 H 1.07997 * 126.12919 * 0.02562 * 11 10 9
42 42 H 1.09001 * 111.00352 * 324.20659 * 18 16 15
43 43 H 1.09002 * 111.00963 * 88.02272 * 18 16 15
44 44 H 1.08993 * 110.36961 * 155.84812 * 19 18 16
45 45 H 1.08998 * 110.36063 * 278.06120 * 19 18 16
46 46 H 0.97001 * 120.00342 * 179.97438 * 24 23 21
47 47 H 1.08995 * 109.88663 * 241.64095 * 29 20 19
48 48 H 1.09007 * 109.87727 * 120.47630 * 29 20 19
49 49 H 1.08999 * 113.66691 * 90.68874 * 30 2 1
50 50 H 1.09009 * 113.66305 * 319.62360 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.3964 1.0570 0.0000
4 6 3.3036 0.0000 0.6530
5 6 4.7345 -0.0001 0.1114
6 6 3.2469 0.0015 2.1589
7 8 2.5539 0.8104 2.7389
8 7 3.9664 -0.8960 2.8612
9 6 3.9118 -0.8941 4.3252
10 6 4.8000 -1.9867 4.8624
11 6 4.3929 -3.2010 5.2991
12 7 5.4876 -3.8843 5.6940
13 1 5.4993 -4.7860 6.0514
14 7 6.6033 -3.0594 5.5018
15 6 6.1901 -1.9224 5.0034
16 6 7.0614 -0.7469 4.6429
17 1 6.4541 0.0907 4.2997
18 6 8.1043 -1.1464 3.5658
19 6 9.2402 -0.1295 3.8404
20 7 9.2661 0.0204 5.3068
21 6 10.3443 0.4231 6.0489
22 1 11.3368 0.3836 5.6249
23 6 10.1615 0.8818 7.3462
24 7 11.1537 0.8276 8.2093
25 14 8.5074 1.5762 7.8670
26 1 7.6115 0.4655 8.2780
27 1 8.6984 2.5065 9.0087
28 1 7.8974 2.3088 6.7283
29 6 7.9424 -0.3327 5.8403
30 6 2.3964 -1.0571 0.0005
31 1 -0.5400 0.9354 -0.0004
32 1 -0.5401 -0.9353 0.0004
33 1 2.1796 1.9073 0.6468
34 1 2.7193 1.3547 -0.9976
35 1 5.1903 0.9739 0.2893
36 1 5.3147 -0.7713 0.6181
37 1 4.7177 -0.2031 -0.9594
38 1 4.5210 -1.5427 2.3974
39 1 4.2550 0.0701 4.7003
40 1 2.8859 -1.0664 4.6507
41 1 3.3747 -3.5601 5.3245
42 1 8.4503 -2.1689 3.7173
43 1 7.6985 -1.0182 2.5623
44 1 10.1930 -0.5191 3.4820
45 1 9.0180 0.8252 3.3637
46 1 11.0261 1.1485 9.1158
47 1 7.5034 0.5289 6.3431
48 1 8.0342 -1.1649 6.5384
49 1 2.7183 -1.3541 -0.9976
50 1 2.1795 -1.9071 0.6476
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001130428146.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:41
Heat of formation + Delta-G solvation = 113.378110 kcal
Electronic energy + Delta-G solvation = -30695.110564 eV
Core-core repulsion = 26726.210368 eV
Total energy + Delta-G solvation = -3968.900196 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-41.47557 -40.80866 -37.90949 -37.69351 -35.10604 -33.06791 -32.26048 -31.60170
-30.64000 -29.51564 -28.12427 -27.85027 -26.38766 -25.99322 -24.47874 -23.00664
-22.39719 -20.58322 -20.27258 -19.73164 -18.99289 -18.51972 -17.90746 -16.84247
-16.73228 -16.17112 -15.79310 -15.49538 -14.85075 -14.81614 -14.70380 -14.51717
-14.36681 -14.01012 -13.58252 -13.32210 -13.21547 -12.97376 -12.89473 -12.77478
-12.66679 -12.45393 -12.39511 -12.25145 -11.79377 -11.39064 -11.11834 -11.08870
-11.01942 -10.85912 -10.62710 -10.49551 -10.48315 -10.08744 -10.02146 -9.94124
-9.38102 -9.36258 -9.15831 -9.13815 -8.68873 -8.54441 -6.98742 -5.88966
-3.16613 1.76285 1.98765 2.48467 2.50509 2.80151 3.28836 3.42537
3.53757 3.56988 4.01445 4.20897 4.25367 4.52698 4.55023 4.61329
4.63291 4.82090 5.01408 5.05168 5.08024 5.13999 5.25334 5.27457
5.28830 5.32395 5.43885 5.45368 5.49800 5.59990 5.63165 5.69840
5.72456 5.74627 5.77268 5.94125 5.95683 6.02553 6.14232 6.17878
6.25890 6.32166 6.50801 6.53980 6.64983 6.65345 6.84516 6.86944
7.19058 7.41616 7.68887 7.78281 8.12793 8.37233 8.89835 9.75957
10.24924 11.27613
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.013451 B = 0.003022 C = 0.002828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2081.167842 B = 9263.054179 C = 9898.651341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.147 4.147
3 C -0.086 4.086
4 C -0.106 4.106
5 C -0.136 4.136
6 C 0.537 3.463
7 O -0.535 6.535
8 N -0.719 5.719
9 C 0.201 3.799
10 C -0.262 4.262
11 C 0.077 3.923
12 N -0.478 5.478
13 H 0.440 0.560
14 N -0.273 5.273
15 C 0.116 3.884
16 C -0.028 4.028
17 H 0.091 0.909
18 C -0.117 4.117
19 C 0.133 3.867
20 N -0.608 5.608
21 C -0.239 4.239
22 H 0.093 0.907
23 C 0.021 3.979
24 N -0.908 5.908
25 Si 0.884 3.116
26 H -0.287 1.287
27 H -0.304 1.304
28 H -0.279 1.279
29 C 0.133 3.867
30 C -0.088 4.088
31 H 0.106 0.894
32 H 0.103 0.897
33 H 0.088 0.912
34 H 0.099 0.901
35 H 0.067 0.933
36 H 0.063 0.937
37 H 0.068 0.932
38 H 0.401 0.599
39 H 0.077 0.923
40 H 0.072 0.928
41 H 0.176 0.824
42 H 0.074 0.926
43 H 0.066 0.934
44 H 0.050 0.950
45 H 0.025 0.975
46 H 0.262 0.738
47 H 0.025 0.975
48 H 0.048 0.952
49 H 0.102 0.898
50 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.811 -9.129 -17.738 28.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.147 4.147
3 C -0.123 4.123
4 C -0.110 4.110
5 C -0.193 4.193
6 C 0.322 3.678
7 O -0.412 6.412
8 N -0.371 5.371
9 C 0.077 3.923
10 C -0.274 4.274
11 C -0.072 4.072
12 N -0.184 5.184
13 H 0.284 0.716
14 N -0.095 5.095
15 C -0.052 4.052
16 C -0.049 4.049
17 H 0.109 0.891
18 C -0.156 4.156
19 C 0.007 3.993
20 N -0.335 5.335
21 C -0.366 4.366
22 H 0.111 0.889
23 C -0.177 4.177
24 N -0.552 5.552
25 Si 0.716 3.284
26 H -0.214 1.214
27 H -0.232 1.232
28 H -0.205 1.205
29 C 0.007 3.993
30 C -0.126 4.126
31 H 0.124 0.876
32 H 0.121 0.879
33 H 0.106 0.894
34 H 0.117 0.883
35 H 0.086 0.914
36 H 0.082 0.918
37 H 0.087 0.913
38 H 0.236 0.764
39 H 0.095 0.905
40 H 0.090 0.910
41 H 0.193 0.807
42 H 0.093 0.907
43 H 0.084 0.916
44 H 0.068 0.932
45 H 0.043 0.957
46 H 0.072 0.928
47 H 0.043 0.957
48 H 0.066 0.934
49 H 0.121 0.879
50 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -20.140 -9.165 -16.675 27.707
hybrid contribution -1.474 0.024 0.385 1.523
sum -21.614 -9.141 -16.291 28.567
Atomic orbital electron populations
1.22835 0.93518 1.02026 1.02318 1.22769 0.93941 0.97846 1.00130
1.22231 0.92593 0.96725 1.00788 1.21787 0.96893 1.00117 0.92157
1.21741 0.93126 1.03175 1.01252 1.19845 0.79074 0.80455 0.88387
1.90698 1.40561 1.38533 1.71374 1.46121 1.48010 1.35771 1.07213
1.19394 0.97655 0.96536 0.78698 1.19918 0.93949 0.97488 1.16071
1.22368 0.93496 0.92827 0.98517 1.46367 1.04480 1.15832 1.51684
0.71631 1.77539 1.07209 1.02862 1.21884 1.22120 0.92596 0.94237
0.96274 1.20724 0.94393 0.92035 0.97772 0.89063 1.22801 0.95640
1.00677 0.96490 1.21615 0.96356 0.95346 0.85943 1.44747 1.08920
1.78725 1.01146 1.18647 0.85855 1.37048 0.95063 0.88924 1.24931
0.96699 1.00193 0.95872 1.69862 1.32321 1.48856 1.04126 0.86943
0.85214 0.79329 0.76887 1.21437 1.23238 1.20521 1.21644 0.86064
0.97758 0.93801 1.22334 0.93392 0.95745 1.01097 0.87623 0.87883
0.89365 0.88322 0.91362 0.91832 0.91294 0.76444 0.90524 0.91006
0.80732 0.90722 0.91561 0.93169 0.95699 0.92801 0.95722 0.93444
0.87947 0.90711
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.41 14.71 29.02 0.43 -0.98 16
2 C -0.15 -1.30 6.80 -100.29 -0.68 -1.98 16
3 C -0.09 -0.77 7.00 -27.02 -0.19 -0.96 16
4 C -0.11 -0.92 1.27 -154.88 -0.20 -1.12 16
5 C -0.14 -0.95 9.13 37.16 0.34 -0.61 16
6 C 0.54 6.27 6.65 -10.99 -0.07 6.20 16
7 O -0.54 -8.37 15.83 5.56 0.09 -8.28 16
8 N -0.72 -7.35 5.43 -61.47 -0.33 -7.68 16
9 C 0.20 2.33 5.68 -5.19 -0.03 2.30 16
10 C -0.26 -3.17 5.47 -105.05 -0.57 -3.74 16
11 C 0.08 0.74 11.90 -17.22 -0.20 0.53 16
12 N -0.48 -5.21 7.36 30.45 0.22 -4.99 16
13 H 0.44 3.28 8.96 -182.61 -1.64 1.65 16
14 N -0.27 -4.36 12.31 33.67 0.41 -3.94 16
15 C 0.12 1.79 5.78 -82.40 -0.48 1.32 16
16 C -0.03 -0.49 3.36 -89.94 -0.30 -0.79 16
17 H 0.09 1.50 7.25 -51.93 -0.38 1.12 16
18 C -0.12 -1.88 6.52 -24.58 -0.16 -2.04 16
19 C 0.13 2.63 7.23 -2.53 -0.02 2.61 16
20 N -0.61 -15.23 3.21 -170.08 -0.55 -15.78 16
21 C -0.24 -6.99 10.56 -15.06 -0.16 -7.15 16
22 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16
23 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16
24 N -0.91 -28.80 13.97 55.49 0.78 -28.03 16
25 Si 0.88 23.82 24.39 -169.99 -4.15 19.67 16
26 H -0.29 -7.60 6.84 56.52 0.39 -7.21 16
27 H -0.30 -8.22 7.11 56.52 0.40 -7.81 16
28 H -0.28 -7.38 6.87 56.52 0.39 -6.99 16
29 C 0.13 3.06 4.74 -3.07 -0.01 3.05 16
30 C -0.09 -0.64 7.19 -27.02 -0.19 -0.83 16
31 H 0.11 0.81 8.06 -52.48 -0.42 0.39 16
32 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16
33 H 0.09 0.96 7.40 -51.92 -0.38 0.58 16
34 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16
35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.06 0.41 7.08 -51.93 -0.37 0.05 16
37 H 0.07 0.37 7.94 -51.93 -0.41 -0.05 16
38 H 0.40 3.42 7.44 -40.82 -0.30 3.12 16
39 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16
40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
41 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16
42 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16
43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16
47 H 0.03 0.63 3.52 -51.93 -0.18 0.44 16
48 H 0.05 1.20 7.55 -51.93 -0.39 0.80 16
49 H 0.10 0.55 7.96 -51.93 -0.41 0.14 16
50 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16
LS Contribution 400.97 15.07 6.04 6.04
Total: -1.00 -37.09 400.97 -9.18 -46.27
By element:
Atomic # 1 Polarization: 9.45 SS G_CDS: -9.09 Total: 0.36 kcal
Atomic # 6 Polarization: -1.04 SS G_CDS: -2.60 Total: -3.65 kcal
Atomic # 7 Polarization: -60.95 SS G_CDS: 0.53 Total: -60.42 kcal
Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal
Atomic # 14 Polarization: 23.82 SS G_CDS: -4.15 Total: 19.67 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -37.09 -9.18 -46.27 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130428146.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.647 kcal
(2) G-P(sol) polarization free energy of solvation -37.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) 113.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds