Wall clock time and date at job start Wed Apr 1 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40157 * 119.84144 * 2 1 4 4 C 1.36452 * 119.41115 * 179.97438 * 3 2 1 5 5 C 1.40089 * 119.24895 * 0.02562 * 4 3 2 6 6 C 1.40858 * 132.86109 * 180.02562 * 5 4 3 7 7 C 1.46565 * 126.58236 * 359.91892 * 6 5 4 8 8 O 1.21720 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00147 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99801 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47025 * 35.00670 * 10 9 7 12 12 C 1.52999 * 109.47051 * 274.99989 * 10 9 7 13 13 C 1.53002 * 109.46576 * 155.00371 * 10 9 7 14 14 C 1.52993 * 109.47310 * 294.99936 * 13 10 9 15 15 H 1.09003 * 109.47164 * 305.00248 * 14 13 10 16 16 C 1.52997 * 109.47233 * 185.00129 * 14 13 10 17 17 N 1.46494 * 109.47405 * 65.00290 * 14 13 10 18 18 C 1.36934 * 120.00377 * 205.00406 * 17 14 13 19 19 H 1.08003 * 120.00088 * 359.97438 * 18 17 14 20 20 C 1.38813 * 120.00340 * 179.97438 * 18 17 14 21 21 N 1.31625 * 119.99632 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47363 * 59.99738 * 22 20 18 24 24 H 1.48503 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 299.99976 * 22 20 18 26 26 C 1.40560 * 106.83753 * 180.18936 * 6 5 4 27 27 N 1.30738 * 108.74366 * 359.60860 * 26 6 5 28 28 N 1.36573 * 120.23439 * 359.95950 * 5 4 3 29 29 C 1.35187 * 119.83775 * 179.97438 * 2 1 3 30 30 C 1.50700 * 119.65018 * 0.02562 * 29 2 1 31 31 H 1.09003 * 109.46681 * 264.30397 * 1 2 3 32 32 H 1.09003 * 109.47300 * 24.29731 * 1 2 3 33 33 H 1.08997 * 109.47388 * 144.30201 * 1 2 3 34 34 H 1.08003 * 120.29605 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.37634 * 179.97438 * 4 3 2 36 36 H 0.97000 * 119.99415 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.46679 * 60.00770 * 12 10 9 38 38 H 1.09000 * 109.46920 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47348 * 300.00574 * 12 10 9 40 40 H 1.09000 * 109.46633 * 174.99696 * 13 10 9 41 41 H 1.09001 * 109.47051 * 55.00164 * 13 10 9 42 42 H 1.08994 * 109.47328 * 300.00088 * 16 14 13 43 43 H 1.09007 * 109.47203 * 59.99766 * 16 14 13 44 44 H 1.08994 * 109.47455 * 179.97438 * 16 14 13 45 45 H 0.97010 * 120.00095 * 24.99801 * 17 14 13 46 46 H 0.97010 * 119.99685 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.62687 * 179.78104 * 26 6 5 48 48 H 1.09002 * 109.46861 * 275.70354 * 30 29 2 49 49 H 1.08999 * 109.46771 * 35.70295 * 30 29 2 50 50 H 1.08994 * 109.47098 * 155.70210 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2044 1.2157 0.0000 4 6 3.5689 1.2055 0.0005 5 6 4.2442 -0.0219 0.0005 6 6 5.6107 -0.3637 0.0014 7 6 6.7437 0.5661 0.0011 8 8 6.5454 1.7671 0.0003 9 7 8.0051 0.0914 0.0026 10 6 9.1375 1.0209 0.0028 11 1 8.8838 1.9025 0.5913 12 6 9.4532 1.4403 -1.4343 13 6 10.3606 0.3342 0.6140 14 6 10.0892 0.0265 2.0879 15 1 9.8023 0.9429 2.6036 16 6 11.3542 -0.5457 2.7307 17 7 9.0039 -0.9520 2.1908 18 6 8.2414 -1.0120 3.3266 19 1 8.4404 -0.3381 4.1468 20 6 7.2126 -1.9388 3.4238 21 7 6.9703 -2.7604 2.4244 22 14 6.1729 -2.0211 4.9735 23 1 5.5003 -0.7147 5.1883 24 1 5.1495 -3.0872 4.8270 25 1 7.0427 -2.3273 6.1375 26 6 5.6792 -1.7676 -0.0036 27 7 4.4632 -2.2476 0.0012 28 7 3.5419 -1.1932 0.0008 29 6 2.1796 -1.1727 0.0005 30 6 1.4145 -2.4710 0.0005 31 1 -0.3633 -0.1020 1.0226 32 1 -0.3634 0.9367 -0.4229 33 1 -0.3634 -0.8345 -0.5996 34 1 1.6667 2.1524 0.0004 35 1 4.1220 2.1331 0.0001 36 1 8.1630 -0.8657 0.0036 37 1 8.5818 1.9295 -1.8697 38 1 10.2960 2.1315 -1.4342 39 1 9.7068 0.5587 -2.0228 40 1 11.2251 0.9932 0.5335 41 1 10.5607 -0.5945 0.0798 42 1 11.6412 -1.4621 2.2151 43 1 12.1619 0.1824 2.6542 44 1 11.1611 -0.7645 3.7809 45 1 8.8252 -1.5575 1.4542 46 1 6.2511 -3.4078 2.4922 47 1 6.5867 -2.3531 -0.0076 48 1 1.1417 -2.7319 1.0231 49 1 0.5113 -2.3604 -0.5996 50 1 2.0371 -3.2596 -0.4219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134653599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:08 Heat of formation + Delta-G solvation = 71.797778 kcal Electronic energy + Delta-G solvation = -31743.836164 eV Core-core repulsion = 27773.132910 eV Total energy + Delta-G solvation = -3970.703254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.72795 -38.96406 -37.52395 -36.54082 -34.07371 -33.51426 -32.46695 -31.90530 -30.58535 -29.04790 -28.39986 -28.17321 -26.27451 -25.81295 -23.59855 -23.23528 -22.10342 -21.26044 -20.50506 -20.09725 -19.15203 -17.37639 -17.10865 -16.23476 -15.96983 -15.61839 -15.40466 -14.90094 -14.71489 -14.17105 -13.92860 -13.75894 -13.73785 -13.61311 -13.17211 -13.03901 -12.87775 -12.75203 -12.58120 -12.42594 -12.25272 -12.06851 -11.81764 -11.71656 -11.64878 -11.57713 -11.48009 -11.04101 -10.93259 -10.78207 -10.68123 -10.29297 -10.25880 -10.22144 -9.85261 -9.82278 -9.61499 -9.04463 -8.90880 -8.79725 -8.20868 -7.12183 -6.85319 -5.76567 -2.98585 0.96331 1.32966 2.56722 2.94370 3.45215 3.48985 3.50465 3.52145 4.00369 4.38090 4.41945 4.63857 4.74663 4.87236 5.00136 5.04100 5.18946 5.31881 5.38368 5.50430 5.54058 5.56553 5.58850 5.62628 5.64838 5.68830 5.76785 5.86178 5.87775 5.95279 6.01113 6.06755 6.08918 6.15553 6.21941 6.30706 6.39478 6.41961 6.44530 6.54697 6.63787 6.67338 6.74487 6.91650 7.05878 7.11378 7.26902 7.36861 7.75220 8.04997 8.41480 8.46818 9.16641 9.56945 10.09853 10.45656 11.47023 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.004552 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.524819 B = 6149.806332 C = 7755.958040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.148 4.148 3 C -0.083 4.083 4 C -0.105 4.105 5 C 0.151 3.849 6 C -0.296 4.296 7 C 0.612 3.388 8 O -0.578 6.578 9 N -0.696 5.696 10 C 0.153 3.847 11 H 0.082 0.918 12 C -0.162 4.162 13 C -0.134 4.134 14 C 0.170 3.830 15 H 0.047 0.953 16 C -0.163 4.163 17 N -0.714 5.714 18 C -0.224 4.224 19 H 0.064 0.936 20 C -0.004 4.004 21 N -0.928 5.928 22 Si 0.897 3.103 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.173 3.827 27 N -0.325 5.325 28 N -0.268 5.268 29 C 0.141 3.859 30 C -0.114 4.114 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.401 0.599 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.377 0.623 46 H 0.255 0.745 47 H 0.204 0.796 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 4.403 -9.356 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C -0.107 4.107 4 C -0.125 4.125 5 C 0.031 3.969 6 C -0.310 4.310 7 C 0.402 3.598 8 O -0.460 6.460 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.100 0.900 12 C -0.220 4.220 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.065 0.935 16 C -0.223 4.223 17 N -0.357 5.357 18 C -0.356 4.356 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.577 5.577 22 Si 0.729 3.271 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.216 1.216 26 C -0.007 4.007 27 N -0.146 5.146 28 N -0.032 5.032 29 C 0.032 3.968 30 C -0.171 4.171 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.238 0.762 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.212 0.788 46 H 0.065 0.935 47 H 0.220 0.780 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.280 4.047 -9.182 12.397 hybrid contribution 0.057 -0.098 1.087 1.093 sum -7.222 3.949 -8.095 11.545 Atomic orbital electron populations 1.20667 0.89214 1.03002 1.02522 1.19190 0.96982 0.91081 1.07944 1.21091 0.93696 0.97698 0.98166 1.20793 0.93879 0.96782 1.00996 1.19270 0.91779 0.87033 0.98844 1.19700 0.91019 0.93860 1.26444 1.16689 0.82032 0.86614 0.74468 1.90655 1.85749 1.15918 1.53711 1.45657 1.04420 1.10103 1.74519 1.20740 0.85811 0.93399 0.95244 0.90003 1.22211 1.01413 1.01010 0.97386 1.22208 0.96671 1.00505 0.97839 1.20269 0.88599 0.93157 0.91985 0.93501 1.22421 0.98301 0.99903 1.01700 1.42400 1.35015 1.39887 1.18396 1.19094 1.08599 1.13912 0.93948 0.91760 1.24450 0.99121 0.98977 0.97467 1.69422 1.33729 1.23802 1.30780 0.86414 0.80272 0.76857 0.83543 1.21807 1.21976 1.21626 1.24173 0.95682 0.92729 0.88141 1.77564 0.98100 1.06520 1.32463 1.46037 1.04842 1.06415 1.45858 1.19856 0.79628 0.97546 0.99775 1.20904 0.99576 0.92931 1.03722 0.91064 0.91173 0.91135 0.84466 0.82658 0.76177 0.92405 0.92339 0.92919 0.90940 0.91806 0.93636 0.94666 0.92955 0.78844 0.93460 0.77970 0.89838 0.89570 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.45 36.01 0.34 -0.47 16 2 C -0.15 -1.90 5.84 -104.99 -0.61 -2.51 16 3 C -0.08 -1.12 9.73 -39.51 -0.38 -1.50 16 4 C -0.10 -1.79 9.73 -39.53 -0.38 -2.18 16 5 C 0.15 3.02 6.76 -84.07 -0.57 2.45 16 6 C -0.30 -6.28 6.17 -104.67 -0.65 -6.93 16 7 C 0.61 13.05 7.75 -12.90 -0.10 12.95 16 8 O -0.58 -13.26 15.37 5.17 0.08 -13.18 16 9 N -0.70 -13.02 3.79 -55.15 -0.21 -13.23 16 10 C 0.15 2.54 2.58 -67.93 -0.17 2.36 16 11 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 12 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 13 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 14 C 0.17 3.18 2.89 -67.94 -0.20 2.98 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 17 N -0.71 -16.06 3.84 -53.43 -0.21 -16.26 16 18 C -0.22 -5.88 9.93 -15.06 -0.15 -6.03 16 19 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 20 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 21 N -0.93 -24.62 10.95 55.49 0.61 -24.02 16 22 Si 0.90 22.81 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.17 3.60 10.08 -17.14 -0.17 3.42 16 27 N -0.33 -6.71 12.18 30.75 0.37 -6.33 16 28 N -0.27 -5.10 3.85 -6.85 -0.03 -5.12 16 29 C 0.14 2.14 6.81 -81.72 -0.56 1.58 16 30 C -0.11 -1.35 9.49 36.01 0.34 -1.01 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.07 0.49 6.15 -51.93 -0.32 0.17 16 34 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.16 2.67 7.12 -52.49 -0.37 2.30 16 36 H 0.40 7.48 5.43 -40.82 -0.22 7.26 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.38 8.56 5.70 -40.82 -0.23 8.33 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.20 4.14 6.78 -52.49 -0.36 3.78 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 0.72 6.15 -51.93 -0.32 0.40 16 50 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -31.23 401.51 -8.78 -40.01 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.66 Total: 15.89 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.77 Total: -1.59 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: 0.54 Total: -64.97 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.23 -8.78 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.812 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds