Wall clock time and date at job start Wed Apr 1 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40157 * 119.84144 * 2 1 4 4 C 1.36452 * 119.41115 * 179.97438 * 3 2 1 5 5 C 1.40089 * 119.24895 * 0.02562 * 4 3 2 6 6 C 1.40858 * 132.86109 * 180.02562 * 5 4 3 7 7 C 1.46565 * 126.58236 * 359.91892 * 6 5 4 8 8 O 1.21720 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00147 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99801 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47025 * 35.00670 * 10 9 7 12 12 C 1.52999 * 109.47051 * 274.99989 * 10 9 7 13 13 C 1.53002 * 109.46576 * 155.00371 * 10 9 7 14 14 C 1.52993 * 109.47310 * 294.99936 * 13 10 9 15 15 H 1.09003 * 109.47164 * 305.00248 * 14 13 10 16 16 C 1.52997 * 109.47233 * 185.00129 * 14 13 10 17 17 N 1.46494 * 109.47405 * 65.00290 * 14 13 10 18 18 C 1.36934 * 120.00377 * 205.00406 * 17 14 13 19 19 H 1.08003 * 120.00088 * 359.97438 * 18 17 14 20 20 C 1.38813 * 120.00340 * 179.97438 * 18 17 14 21 21 N 1.31625 * 119.99632 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47363 * 59.99738 * 22 20 18 24 24 H 1.48503 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 299.99976 * 22 20 18 26 26 C 1.40560 * 106.83753 * 180.18936 * 6 5 4 27 27 N 1.30738 * 108.74366 * 359.60860 * 26 6 5 28 28 N 1.36573 * 120.23439 * 359.95950 * 5 4 3 29 29 C 1.35187 * 119.83775 * 179.97438 * 2 1 3 30 30 C 1.50700 * 119.65018 * 0.02562 * 29 2 1 31 31 H 1.09003 * 109.46681 * 264.30397 * 1 2 3 32 32 H 1.09003 * 109.47300 * 24.29731 * 1 2 3 33 33 H 1.08997 * 109.47388 * 144.30201 * 1 2 3 34 34 H 1.08003 * 120.29605 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.37634 * 179.97438 * 4 3 2 36 36 H 0.97000 * 119.99415 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.46679 * 60.00770 * 12 10 9 38 38 H 1.09000 * 109.46920 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47348 * 300.00574 * 12 10 9 40 40 H 1.09000 * 109.46633 * 174.99696 * 13 10 9 41 41 H 1.09001 * 109.47051 * 55.00164 * 13 10 9 42 42 H 1.08994 * 109.47328 * 300.00088 * 16 14 13 43 43 H 1.09007 * 109.47203 * 59.99766 * 16 14 13 44 44 H 1.08994 * 109.47455 * 179.97438 * 16 14 13 45 45 H 0.97010 * 120.00095 * 24.99801 * 17 14 13 46 46 H 0.97010 * 119.99685 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.62687 * 179.78104 * 26 6 5 48 48 H 1.09002 * 109.46861 * 275.70354 * 30 29 2 49 49 H 1.08999 * 109.46771 * 35.70295 * 30 29 2 50 50 H 1.08994 * 109.47098 * 155.70210 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2044 1.2157 0.0000 4 6 3.5689 1.2055 0.0005 5 6 4.2442 -0.0219 0.0005 6 6 5.6107 -0.3637 0.0014 7 6 6.7437 0.5661 0.0011 8 8 6.5454 1.7671 0.0003 9 7 8.0051 0.0914 0.0026 10 6 9.1375 1.0209 0.0028 11 1 8.8838 1.9025 0.5913 12 6 9.4532 1.4403 -1.4343 13 6 10.3606 0.3342 0.6140 14 6 10.0892 0.0265 2.0879 15 1 9.8023 0.9429 2.6036 16 6 11.3542 -0.5457 2.7307 17 7 9.0039 -0.9520 2.1908 18 6 8.2414 -1.0120 3.3266 19 1 8.4404 -0.3381 4.1468 20 6 7.2126 -1.9388 3.4238 21 7 6.9703 -2.7604 2.4244 22 14 6.1729 -2.0211 4.9735 23 1 5.5003 -0.7147 5.1883 24 1 5.1495 -3.0872 4.8270 25 1 7.0427 -2.3273 6.1375 26 6 5.6792 -1.7676 -0.0036 27 7 4.4632 -2.2476 0.0012 28 7 3.5419 -1.1932 0.0008 29 6 2.1796 -1.1727 0.0005 30 6 1.4145 -2.4710 0.0005 31 1 -0.3633 -0.1020 1.0226 32 1 -0.3634 0.9367 -0.4229 33 1 -0.3634 -0.8345 -0.5996 34 1 1.6667 2.1524 0.0004 35 1 4.1220 2.1331 0.0001 36 1 8.1630 -0.8657 0.0036 37 1 8.5818 1.9295 -1.8697 38 1 10.2960 2.1315 -1.4342 39 1 9.7068 0.5587 -2.0228 40 1 11.2251 0.9932 0.5335 41 1 10.5607 -0.5945 0.0798 42 1 11.6412 -1.4621 2.2151 43 1 12.1619 0.1824 2.6542 44 1 11.1611 -0.7645 3.7809 45 1 8.8252 -1.5575 1.4542 46 1 6.2511 -3.4078 2.4922 47 1 6.5867 -2.3531 -0.0076 48 1 1.1417 -2.7319 1.0231 49 1 0.5113 -2.3604 -0.5996 50 1 2.0371 -3.2596 -0.4219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134653599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:07 Heat of formation + Delta-G solvation = 53.582361 kcal Electronic energy + Delta-G solvation = -31744.626044 eV Core-core repulsion = 27773.132910 eV Total energy + Delta-G solvation = -3971.493134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.09490 -40.46327 -38.77919 -38.11741 -35.70704 -34.74515 -34.07154 -33.32867 -32.07870 -30.50423 -29.97169 -29.23464 -27.56262 -26.91984 -25.53467 -24.60624 -23.34227 -22.63131 -21.90345 -21.60147 -20.66588 -19.06518 -18.71852 -17.57571 -17.35139 -16.95080 -16.84768 -16.53316 -16.08119 -15.68725 -15.51888 -15.33567 -15.19850 -14.79163 -14.52383 -14.25048 -14.17651 -14.07778 -13.69748 -13.56649 -13.55172 -13.29947 -13.20422 -13.14454 -12.91986 -12.84614 -12.76781 -12.61689 -12.40514 -12.27300 -12.21581 -12.19844 -11.69757 -11.67260 -11.55415 -11.37013 -11.18808 -10.84914 -10.64749 -10.12387 -9.74502 -8.78818 -8.45283 -7.83976 -5.01848 -0.29243 0.04770 1.25867 1.36415 1.39083 1.40415 1.42681 2.21746 2.53872 2.59782 2.85044 3.22052 3.51837 3.66592 3.69850 3.85082 3.88697 3.97916 4.06374 4.22263 4.24648 4.40974 4.47013 4.48353 4.55495 4.58159 4.61404 4.62520 4.73596 4.81930 4.87637 4.89185 4.90929 4.97318 5.01230 5.11682 5.16234 5.17424 5.21562 5.23375 5.29507 5.41719 5.46149 5.50905 5.61653 5.63408 5.67173 5.91275 5.95025 6.38645 6.57635 6.88771 7.48808 7.59334 8.21867 8.49037 9.36105 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.004552 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.524819 B = 6149.806332 C = 7755.958040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.132 4.132 3 C -0.053 4.053 4 C -0.141 4.141 5 C 0.135 3.865 6 C -0.339 4.339 7 C 0.605 3.395 8 O -0.607 6.607 9 N -0.690 5.690 10 C 0.149 3.851 11 H 0.054 0.946 12 C -0.150 4.150 13 C -0.119 4.119 14 C 0.162 3.838 15 H 0.026 0.974 16 C -0.153 4.153 17 N -0.717 5.717 18 C -0.224 4.224 19 H 0.052 0.948 20 C -0.043 4.043 21 N -0.925 5.925 22 Si 0.932 3.068 23 H -0.304 1.304 24 H -0.302 1.302 25 H -0.284 1.284 26 C 0.172 3.828 27 N -0.351 5.351 28 N -0.270 5.270 29 C 0.110 3.890 30 C -0.110 4.110 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.182 0.818 35 H 0.145 0.855 36 H 0.400 0.600 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.375 0.625 46 H 0.245 0.755 47 H 0.196 0.804 48 H 0.089 0.911 49 H 0.127 0.873 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 5.184 -10.295 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C -0.076 4.076 4 C -0.161 4.161 5 C 0.014 3.986 6 C -0.353 4.353 7 C 0.395 3.605 8 O -0.492 6.492 9 N -0.340 5.340 10 C 0.044 3.956 11 H 0.073 0.927 12 C -0.209 4.209 13 C -0.158 4.158 14 C 0.054 3.946 15 H 0.045 0.955 16 C -0.212 4.212 17 N -0.360 5.360 18 C -0.356 4.356 19 H 0.070 0.930 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.766 3.234 23 H -0.232 1.232 24 H -0.228 1.228 25 H -0.210 1.210 26 C -0.008 4.008 27 N -0.172 5.172 28 N -0.034 5.034 29 C 0.002 3.998 30 C -0.167 4.167 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.200 0.800 35 H 0.163 0.837 36 H 0.237 0.763 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.210 0.790 46 H 0.054 0.946 47 H 0.213 0.787 48 H 0.108 0.892 49 H 0.145 0.855 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.629 4.818 -10.123 14.147 hybrid contribution 0.289 -0.232 1.381 1.430 sum -8.339 4.586 -8.742 12.923 Atomic orbital electron populations 1.20857 0.85074 1.05352 1.04001 1.19894 0.99559 0.89707 1.04410 1.21685 0.92267 1.00013 0.93649 1.20868 0.95614 0.95390 1.04227 1.19652 0.91856 0.88380 0.98717 1.19834 0.91920 0.94017 1.29537 1.16885 0.82897 0.86376 0.74341 1.90605 1.86249 1.16840 1.55511 1.45695 1.04374 1.10312 1.73623 1.20910 0.85596 0.92181 0.96897 0.92744 1.22100 1.01569 1.02032 0.95156 1.22127 0.97039 1.01730 0.94859 1.20480 0.88109 0.91412 0.94602 0.95543 1.22261 0.98233 1.00895 0.99841 1.42448 1.35703 1.40638 1.17184 1.19147 1.08797 1.12982 0.94692 0.93028 1.24829 1.00246 0.99867 0.98857 1.69509 1.33390 1.23786 1.30845 0.85847 0.79321 0.75594 0.82644 1.23237 1.22843 1.21036 1.23979 0.95697 0.92652 0.88435 1.77420 0.98329 1.07600 1.33875 1.46255 1.06053 1.05604 1.45481 1.20840 0.78419 1.00237 1.00304 1.21023 1.00279 0.90637 1.04729 0.89692 0.88694 0.89100 0.80032 0.83683 0.76262 0.94434 0.89501 0.91453 0.87265 0.90513 0.93258 0.91256 0.95359 0.79047 0.94581 0.78715 0.89234 0.85464 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.45 71.24 0.67 -0.42 16 2 C -0.13 -2.96 5.84 -20.10 -0.12 -3.08 16 3 C -0.05 -1.29 9.73 22.32 0.22 -1.08 16 4 C -0.14 -4.90 9.73 22.30 0.22 -4.68 16 5 C 0.14 5.64 6.76 39.50 0.27 5.91 16 6 C -0.34 -15.32 6.17 -19.90 -0.12 -15.44 16 7 C 0.60 27.39 7.75 86.41 0.67 28.06 16 8 O -0.61 -29.59 15.37 -4.41 -0.07 -29.66 16 9 N -0.69 -26.95 3.79 -446.59 -1.69 -28.65 16 10 C 0.15 4.93 2.58 44.99 0.12 5.05 16 11 H 0.05 2.11 7.57 -2.39 -0.02 2.10 16 12 C -0.15 -4.02 9.48 71.98 0.68 -3.34 16 13 C -0.12 -3.42 4.43 30.59 0.14 -3.28 16 14 C 0.16 6.03 2.89 44.99 0.13 6.16 16 15 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 16 C -0.15 -5.04 9.49 71.98 0.68 -4.36 16 17 N -0.72 -32.93 3.84 -322.96 -1.24 -34.17 16 18 C -0.22 -12.08 9.93 84.03 0.83 -11.24 16 19 H 0.05 2.88 7.83 -2.91 -0.02 2.85 16 20 C -0.04 -2.40 5.50 84.86 0.47 -1.94 16 21 N -0.93 -50.76 10.95 21.65 0.24 -50.53 16 22 Si 0.93 48.04 29.55 68.60 2.03 50.07 16 23 H -0.30 -16.18 7.11 99.48 0.71 -15.48 16 24 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 25 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 26 C 0.17 7.63 10.08 85.42 0.86 8.49 16 27 N -0.35 -15.18 12.18 -56.61 -0.69 -15.87 16 28 N -0.27 -10.55 3.85 -175.58 -0.68 -11.22 16 29 C 0.11 3.20 6.81 41.17 0.28 3.48 16 30 C -0.11 -2.37 9.49 71.24 0.68 -1.70 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.70 8.05 -2.39 -0.02 0.68 16 33 H 0.09 0.73 6.15 -2.39 -0.01 0.72 16 34 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.15 5.24 7.12 -2.91 -0.02 5.22 16 36 H 0.40 15.62 5.43 -92.71 -0.50 15.12 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.37 17.45 5.70 -92.70 -0.53 16.92 16 46 H 0.24 13.86 8.31 -92.70 -0.77 13.09 16 47 H 0.20 8.61 6.78 -2.91 -0.02 8.59 16 48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.13 1.61 6.15 -2.39 -0.01 1.60 16 50 H 0.06 1.67 7.89 -2.39 -0.02 1.66 16 Total: -1.00 -73.70 401.51 4.50 -69.20 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.07 Total: 44.24 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.67 Total: 6.59 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -4.06 Total: -140.45 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.07 Total: -29.66 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -73.70 4.50 -69.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.780 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds