Wall clock time and date at job start Wed Apr 1 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38774 * 119.77605 * 2 1 4 4 C 1.36599 * 120.66816 * 180.02562 * 3 2 1 5 5 C 1.39745 * 119.88797 * 0.03914 * 4 3 2 6 6 N 1.35780 * 133.59826 * 180.02562 * 5 4 3 7 7 C 1.30110 * 109.64110 * 179.69690 * 6 5 4 8 8 N 1.36030 * 110.09923 * 0.39773 * 7 6 5 9 9 C 1.46505 * 126.35038 * 179.87545 * 8 7 6 10 10 C 1.50703 * 109.47064 * 264.68718 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.53002 * 109.47076 * 204.99915 * 13 12 10 17 17 C 1.52995 * 109.47310 * 64.99893 * 16 13 12 18 18 H 1.09008 * 109.46799 * 304.99686 * 17 16 13 19 19 C 1.53005 * 109.47209 * 185.00113 * 17 16 13 20 20 N 1.46499 * 109.47232 * 64.99935 * 17 16 13 21 21 C 1.36939 * 119.99809 * 204.99899 * 20 17 16 22 22 H 1.08001 * 120.00213 * 0.02562 * 21 20 17 23 23 C 1.38813 * 119.99825 * 179.97438 * 21 20 17 24 24 N 1.31619 * 120.00033 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47491 * 89.99557 * 25 23 21 27 27 H 1.48501 * 109.47012 * 209.99608 * 25 23 21 28 28 H 1.48499 * 109.47460 * 329.99245 * 25 23 21 29 29 C 1.38053 * 107.30525 * 359.61057 * 8 7 6 30 30 C 1.37862 * 119.77300 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47538 * 269.98133 * 1 2 3 32 32 H 1.09004 * 109.47088 * 29.98089 * 1 2 3 33 33 H 1.08999 * 109.47048 * 149.97634 * 1 2 3 34 34 H 1.07999 * 119.66550 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.05688 * 180.02562 * 4 3 2 36 36 H 1.08005 * 124.95214 * 180.26473 * 7 6 5 37 37 H 1.09002 * 109.47068 * 24.68686 * 9 8 7 38 38 H 1.09001 * 109.47372 * 144.68774 * 9 8 7 39 39 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 41 41 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 42 42 H 1.09000 * 109.47057 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46658 * 184.99904 * 16 13 12 44 44 H 1.08998 * 109.46554 * 304.99506 * 16 13 12 45 45 H 1.08994 * 109.47150 * 179.97438 * 19 17 16 46 46 H 1.08997 * 109.46701 * 299.99983 * 19 17 16 47 47 H 1.08999 * 109.47014 * 59.99551 * 19 17 16 48 48 H 0.96998 * 119.99847 * 24.99759 * 20 17 16 49 49 H 0.96999 * 119.99879 * 179.97438 * 24 23 21 50 50 H 1.07996 * 120.15249 * 359.95756 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2045 0.0000 4 6 3.5619 1.2258 -0.0005 5 6 4.2771 0.0252 -0.0019 6 7 5.6010 -0.2761 -0.0023 7 6 5.7556 -1.5679 0.0028 8 7 4.5428 -2.1839 -0.0022 9 6 4.3028 -3.6291 -0.0015 10 6 4.0974 -4.1049 -1.4166 11 8 4.1462 -3.3145 -2.3352 12 7 3.8585 -5.4086 -1.6613 13 6 3.6594 -5.8712 -3.0370 14 1 3.1370 -5.1027 -3.6068 15 6 5.0180 -6.1499 -3.6830 16 6 2.8261 -7.1543 -3.0280 17 6 1.4242 -6.8483 -2.4970 18 1 1.5019 -6.3736 -1.5188 19 6 0.6313 -8.1507 -2.3703 20 7 0.7369 -5.9463 -3.4244 21 6 -0.2697 -5.1358 -2.9715 22 1 -0.5566 -5.1612 -1.9306 23 6 -0.9207 -4.2807 -3.8501 24 7 -1.8885 -3.5020 -3.4150 25 14 -0.4240 -4.2362 -5.6503 26 1 -1.2276 -5.2271 -6.4102 27 1 -0.6675 -2.8773 -6.1975 28 1 1.0180 -4.5686 -5.7744 29 6 3.5798 -1.1946 -0.0019 30 6 2.1915 -1.1966 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6470 2.1345 0.0004 35 1 4.0883 2.1689 -0.0001 36 1 6.7081 -2.0771 0.0078 37 1 5.1624 -4.1399 0.4324 38 1 3.4132 -3.8495 0.5886 39 1 3.8192 -6.0406 -0.9265 40 1 5.6117 -5.2357 -3.6894 41 1 5.5405 -6.9184 -3.1133 42 1 4.8699 -6.4937 -4.7067 43 1 2.7528 -7.5470 -4.0422 44 1 3.3046 -7.8937 -2.3858 45 1 -0.3672 -7.9327 -1.9916 46 1 0.5537 -8.6253 -3.3484 47 1 1.1427 -8.8218 -1.6803 48 1 0.9948 -5.9231 -4.3591 49 1 -2.3431 -2.9043 -4.0289 50 1 1.6503 -2.1312 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135274272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:49 Heat of formation + Delta-G solvation = 45.461199 kcal Electronic energy + Delta-G solvation = -30984.820994 eV Core-core repulsion = 27012.975701 eV Total energy + Delta-G solvation = -3971.845294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06001 -39.72417 -37.59749 -37.05761 -34.72210 -34.14712 -32.26398 -31.39698 -31.04940 -30.18612 -29.29287 -27.55313 -26.49267 -26.20103 -23.38409 -22.90764 -22.04153 -21.21979 -20.75725 -20.15582 -19.91915 -17.84306 -17.33169 -17.20915 -16.92843 -15.91760 -15.43034 -15.13786 -14.99457 -14.76602 -14.22702 -14.11018 -13.86585 -13.68666 -13.62482 -13.34589 -13.26719 -13.10446 -12.71988 -12.58719 -12.38732 -12.17673 -12.05411 -11.89660 -11.79920 -11.65204 -11.31114 -11.19851 -11.11647 -10.97377 -10.73317 -10.57957 -10.49668 -10.33716 -10.02231 -9.84261 -9.70708 -9.59527 -8.95709 -8.93763 -8.14184 -7.80804 -7.27648 -5.77327 -3.12154 1.13644 1.69442 2.44218 2.62153 2.90318 3.31641 3.38537 3.41161 3.47562 4.05320 4.37022 4.48436 4.54306 4.60125 4.65578 4.82130 4.91569 5.10259 5.15691 5.20442 5.23028 5.43091 5.46465 5.52868 5.59605 5.64999 5.67220 5.71925 5.78072 5.81869 5.91602 5.92579 5.96171 6.10221 6.14942 6.23670 6.27722 6.34695 6.39649 6.43141 6.58470 6.59736 6.68644 6.72734 6.86216 6.91332 7.06169 7.15626 7.52888 7.96257 7.96362 8.26572 8.41278 9.19549 9.93022 10.11663 11.40904 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.004371 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.929887 B = 6404.241771 C = 8397.382677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.127 4.127 4 C -0.067 4.067 5 C 0.036 3.964 6 N -0.496 5.496 7 C 0.261 3.739 8 N -0.477 5.477 9 C 0.093 3.907 10 C 0.494 3.506 11 O -0.513 6.513 12 N -0.713 5.713 13 C 0.144 3.856 14 H 0.100 0.900 15 C -0.161 4.161 16 C -0.135 4.135 17 C 0.178 3.822 18 H 0.053 0.947 19 C -0.166 4.166 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.087 0.913 23 C 0.009 3.991 24 N -0.931 5.931 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.278 1.278 29 C 0.068 3.932 30 C -0.102 4.102 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.209 0.791 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.396 0.604 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.359 0.641 49 H 0.259 0.741 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.122 -2.970 9.984 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.087 4.087 5 C -0.081 4.081 6 N -0.215 5.215 7 C -0.025 4.025 8 N -0.167 5.167 9 C -0.034 4.034 10 C 0.277 3.723 11 O -0.387 6.387 12 N -0.365 5.365 13 C 0.040 3.960 14 H 0.118 0.882 15 C -0.220 4.220 16 C -0.173 4.173 17 C 0.068 3.932 18 H 0.071 0.929 19 C -0.226 4.226 20 N -0.389 5.389 21 C -0.370 4.370 22 H 0.105 0.895 23 C -0.187 4.187 24 N -0.579 5.579 25 Si 0.711 3.289 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.040 4.040 30 C -0.123 4.123 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.225 0.775 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.230 0.770 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.600 -1.749 9.434 17.470 hybrid contribution -0.361 -1.093 -1.168 1.640 sum 14.239 -2.842 8.266 16.707 Atomic orbital electron populations 1.20813 0.90290 1.03966 1.02129 1.19675 0.96313 0.91913 0.98471 1.20537 0.93417 0.97670 1.03124 1.19911 0.93146 0.95415 1.00188 1.18944 0.89235 0.93016 1.06880 1.70378 1.17003 1.12153 1.21945 1.25156 0.89498 0.88726 0.99081 1.44748 1.06314 1.04942 1.60703 1.21603 1.05903 0.79371 0.96496 1.20667 0.77702 0.82931 0.90980 1.90810 1.48700 1.53687 1.45479 1.45881 1.72826 1.08094 1.09716 1.21024 0.95139 0.97713 0.82134 0.88223 1.22183 0.97465 1.01537 1.00779 1.22225 0.96769 0.95794 1.02536 1.20179 0.88751 0.90183 0.94066 0.92943 1.22426 1.01516 0.98383 1.00275 1.42782 1.42189 1.46896 1.07027 1.18954 1.08208 1.13850 0.96028 0.89510 1.24610 0.98134 0.98626 0.97315 1.69679 1.25958 1.27906 1.34349 0.86617 0.78042 0.77103 0.87153 1.21254 1.21783 1.20412 1.18762 0.91538 0.88499 1.05240 1.19895 0.89481 0.98902 1.04039 0.91325 0.91469 0.90220 0.85560 0.85698 0.77501 0.86032 0.86345 0.76981 0.92503 0.92815 0.91773 0.90675 0.91473 0.92386 0.93609 0.94375 0.80772 0.93138 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 10.00 36.00 0.36 -1.29 16 2 C -0.06 -0.97 5.88 -104.56 -0.62 -1.59 16 3 C -0.13 -1.81 9.61 -39.98 -0.38 -2.20 16 4 C -0.07 -1.01 10.05 -39.61 -0.40 -1.41 16 5 C 0.04 0.62 7.23 -84.70 -0.61 0.00 16 6 N -0.50 -8.02 11.27 -12.05 -0.14 -8.16 16 7 C 0.26 3.40 12.49 -89.79 -1.12 2.28 16 8 N -0.48 -6.56 2.29 -117.08 -0.27 -6.83 16 9 C 0.09 0.95 6.64 -5.19 -0.03 0.92 16 10 C 0.49 7.01 7.86 -10.98 -0.09 6.93 16 11 O -0.51 -10.22 16.09 5.56 0.09 -10.13 16 12 N -0.71 -8.50 4.45 -53.81 -0.24 -8.74 16 13 C 0.14 2.03 2.52 -67.93 -0.17 1.86 16 14 H 0.10 1.92 7.05 -51.93 -0.37 1.56 16 15 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 16 C -0.13 -1.75 4.29 -26.73 -0.11 -1.86 16 17 C 0.18 2.99 2.84 -67.93 -0.19 2.80 16 18 H 0.05 0.90 7.56 -51.92 -0.39 0.51 16 19 C -0.17 -2.60 9.49 37.16 0.35 -2.25 16 20 N -0.75 -16.60 4.30 -53.42 -0.23 -16.82 16 21 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 22 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 24 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 25 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 29 C 0.07 1.13 6.87 -83.99 -0.58 0.55 16 30 C -0.10 -1.73 9.69 -39.50 -0.38 -2.11 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.21 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.12 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.40 3.28 8.60 -40.82 -0.35 2.93 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.36 8.12 5.66 -40.82 -0.23 7.89 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -37.49 414.89 -10.46 -47.95 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.11 Total: 12.10 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.88 Total: -5.44 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -0.10 Total: -68.55 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.49 -10.46 -47.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135274272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.413 kcal (2) G-P(sol) polarization free energy of solvation -37.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds