Wall clock time and date at job start Wed Apr 1 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38774 * 119.77605 * 2 1 4 4 C 1.36599 * 120.66816 * 180.02562 * 3 2 1 5 5 C 1.39745 * 119.88797 * 0.03914 * 4 3 2 6 6 N 1.35780 * 133.59826 * 180.02562 * 5 4 3 7 7 C 1.30110 * 109.64110 * 179.69690 * 6 5 4 8 8 N 1.36030 * 110.09923 * 0.39773 * 7 6 5 9 9 C 1.46505 * 126.35038 * 179.87545 * 8 7 6 10 10 C 1.50703 * 109.47064 * 264.68718 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.53002 * 109.47076 * 204.99915 * 13 12 10 17 17 C 1.52995 * 109.47310 * 64.99893 * 16 13 12 18 18 H 1.09008 * 109.46799 * 304.99686 * 17 16 13 19 19 C 1.53005 * 109.47209 * 185.00113 * 17 16 13 20 20 N 1.46499 * 109.47232 * 64.99935 * 17 16 13 21 21 C 1.36939 * 119.99809 * 204.99899 * 20 17 16 22 22 H 1.08001 * 120.00213 * 0.02562 * 21 20 17 23 23 C 1.38813 * 119.99825 * 179.97438 * 21 20 17 24 24 N 1.31619 * 120.00033 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47491 * 89.99557 * 25 23 21 27 27 H 1.48501 * 109.47012 * 209.99608 * 25 23 21 28 28 H 1.48499 * 109.47460 * 329.99245 * 25 23 21 29 29 C 1.38053 * 107.30525 * 359.61057 * 8 7 6 30 30 C 1.37862 * 119.77300 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47538 * 269.98133 * 1 2 3 32 32 H 1.09004 * 109.47088 * 29.98089 * 1 2 3 33 33 H 1.08999 * 109.47048 * 149.97634 * 1 2 3 34 34 H 1.07999 * 119.66550 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.05688 * 180.02562 * 4 3 2 36 36 H 1.08005 * 124.95214 * 180.26473 * 7 6 5 37 37 H 1.09002 * 109.47068 * 24.68686 * 9 8 7 38 38 H 1.09001 * 109.47372 * 144.68774 * 9 8 7 39 39 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 41 41 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 42 42 H 1.09000 * 109.47057 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46658 * 184.99904 * 16 13 12 44 44 H 1.08998 * 109.46554 * 304.99506 * 16 13 12 45 45 H 1.08994 * 109.47150 * 179.97438 * 19 17 16 46 46 H 1.08997 * 109.46701 * 299.99983 * 19 17 16 47 47 H 1.08999 * 109.47014 * 59.99551 * 19 17 16 48 48 H 0.96998 * 119.99847 * 24.99759 * 20 17 16 49 49 H 0.96999 * 119.99879 * 179.97438 * 24 23 21 50 50 H 1.07996 * 120.15249 * 359.95756 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2045 0.0000 4 6 3.5619 1.2258 -0.0005 5 6 4.2771 0.0252 -0.0019 6 7 5.6010 -0.2761 -0.0023 7 6 5.7556 -1.5679 0.0028 8 7 4.5428 -2.1839 -0.0022 9 6 4.3028 -3.6291 -0.0015 10 6 4.0974 -4.1049 -1.4166 11 8 4.1462 -3.3145 -2.3352 12 7 3.8585 -5.4086 -1.6613 13 6 3.6594 -5.8712 -3.0370 14 1 3.1370 -5.1027 -3.6068 15 6 5.0180 -6.1499 -3.6830 16 6 2.8261 -7.1543 -3.0280 17 6 1.4242 -6.8483 -2.4970 18 1 1.5019 -6.3736 -1.5188 19 6 0.6313 -8.1507 -2.3703 20 7 0.7369 -5.9463 -3.4244 21 6 -0.2697 -5.1358 -2.9715 22 1 -0.5566 -5.1612 -1.9306 23 6 -0.9207 -4.2807 -3.8501 24 7 -1.8885 -3.5020 -3.4150 25 14 -0.4240 -4.2362 -5.6503 26 1 -1.2276 -5.2271 -6.4102 27 1 -0.6675 -2.8773 -6.1975 28 1 1.0180 -4.5686 -5.7744 29 6 3.5798 -1.1946 -0.0019 30 6 2.1915 -1.1966 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6470 2.1345 0.0004 35 1 4.0883 2.1689 -0.0001 36 1 6.7081 -2.0771 0.0078 37 1 5.1624 -4.1399 0.4324 38 1 3.4132 -3.8495 0.5886 39 1 3.8192 -6.0406 -0.9265 40 1 5.6117 -5.2357 -3.6894 41 1 5.5405 -6.9184 -3.1133 42 1 4.8699 -6.4937 -4.7067 43 1 2.7528 -7.5470 -4.0422 44 1 3.3046 -7.8937 -2.3858 45 1 -0.3672 -7.9327 -1.9916 46 1 0.5537 -8.6253 -3.3484 47 1 1.1427 -8.8218 -1.6803 48 1 0.9948 -5.9231 -4.3591 49 1 -2.3431 -2.9043 -4.0289 50 1 1.6503 -2.1312 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135274272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:48 Heat of formation + Delta-G solvation = 20.952005 kcal Electronic energy + Delta-G solvation = -30985.883793 eV Core-core repulsion = 27012.975701 eV Total energy + Delta-G solvation = -3972.908092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.14834 -40.86655 -38.76520 -38.39132 -36.18746 -35.24081 -34.10436 -32.61775 -32.27340 -31.37792 -30.95177 -28.54031 -27.61151 -27.35351 -25.34967 -24.03017 -23.15950 -22.38837 -21.98149 -21.31262 -21.24295 -19.73825 -18.54172 -18.27450 -18.02394 -17.10768 -16.70878 -16.42459 -16.23995 -16.17143 -15.78152 -15.31255 -15.15424 -14.98723 -14.78852 -14.62799 -14.45638 -14.34658 -14.24506 -14.03553 -13.52453 -13.42626 -13.19151 -13.08520 -13.03360 -12.83471 -12.78060 -12.64891 -12.43178 -12.37259 -12.24787 -12.02892 -11.88306 -11.71787 -11.66765 -11.46330 -10.99526 -10.98445 -10.86562 -10.05924 -9.28554 -9.26958 -8.99117 -8.02063 -5.30947 -0.01679 0.51527 1.29251 1.33935 1.38593 1.44278 1.56147 1.83443 2.31760 2.45219 2.86037 3.31530 3.32131 3.58640 3.64602 3.68144 3.73964 3.86252 3.95414 4.07052 4.08097 4.13670 4.31555 4.32991 4.46182 4.49445 4.50395 4.63784 4.71064 4.75931 4.80077 4.80424 4.80696 4.89808 4.99272 5.07636 5.12446 5.18439 5.21335 5.30963 5.36565 5.41464 5.51393 5.57450 5.60418 5.66183 5.79635 5.91903 6.15686 6.22524 6.56504 6.85942 7.10710 7.27289 7.90130 8.04237 9.19434 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.004371 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.929887 B = 6404.241771 C = 8397.382677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.076 4.076 5 C 0.012 3.988 6 N -0.531 5.531 7 C 0.274 3.726 8 N -0.479 5.479 9 C 0.095 3.905 10 C 0.488 3.512 11 O -0.580 6.580 12 N -0.697 5.697 13 C 0.143 3.857 14 H 0.041 0.959 15 C -0.150 4.150 16 C -0.121 4.121 17 C 0.167 3.833 18 H 0.047 0.953 19 C -0.158 4.158 20 N -0.751 5.751 21 C -0.210 4.210 22 H 0.058 0.942 23 C -0.061 4.061 24 N -0.979 5.979 25 Si 0.938 3.062 26 H -0.275 1.275 27 H -0.307 1.307 28 H -0.263 1.263 29 C 0.046 3.954 30 C -0.126 4.126 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.258 0.742 37 H 0.183 0.817 38 H 0.130 0.870 39 H 0.418 0.582 40 H 0.035 0.965 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.025 0.975 46 H 0.048 0.952 47 H 0.081 0.919 48 H 0.359 0.641 49 H 0.253 0.747 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.061 -5.558 10.802 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.096 4.096 5 C -0.105 4.105 6 N -0.250 5.250 7 C -0.012 4.012 8 N -0.169 5.169 9 C -0.030 4.030 10 C 0.274 3.726 11 O -0.458 6.458 12 N -0.351 5.351 13 C 0.038 3.962 14 H 0.059 0.941 15 C -0.208 4.208 16 C -0.159 4.159 17 C 0.060 3.940 18 H 0.065 0.935 19 C -0.217 4.217 20 N -0.394 5.394 21 C -0.342 4.342 22 H 0.076 0.924 23 C -0.252 4.252 24 N -0.630 5.630 25 Si 0.768 3.232 26 H -0.201 1.201 27 H -0.234 1.234 28 H -0.188 1.188 29 C -0.063 4.063 30 C -0.147 4.147 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.274 0.726 37 H 0.200 0.800 38 H 0.148 0.852 39 H 0.256 0.744 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.134 0.866 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.192 0.808 49 H 0.062 0.938 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.575 -4.458 10.295 20.851 hybrid contribution -1.222 -0.396 -1.320 1.842 sum 16.353 -4.854 8.975 19.275 Atomic orbital electron populations 1.20768 0.89751 1.02832 1.03193 1.19936 0.96899 0.92333 0.98586 1.20821 0.93394 0.98187 1.02127 1.20258 0.93596 0.95909 0.99808 1.19387 0.89996 0.93777 1.07356 1.70366 1.16544 1.14069 1.24008 1.26155 0.90743 0.88215 0.96038 1.44979 1.05862 1.05940 1.60092 1.21961 1.09218 0.77822 0.94006 1.21388 0.76374 0.82908 0.91965 1.90789 1.51840 1.55408 1.47801 1.45749 1.71423 1.08039 1.09845 1.20869 0.96209 0.96452 0.82635 0.94107 1.22073 0.95749 1.01604 1.01421 1.22145 0.93785 0.96139 1.03814 1.20527 0.90925 0.89657 0.92913 0.93487 1.22292 0.99906 0.98120 1.01425 1.42881 1.41413 1.47165 1.07953 1.18932 1.07873 1.12875 0.94489 0.92396 1.25299 0.99102 0.99493 1.01356 1.69842 1.28074 1.29659 1.35461 0.85650 0.78605 0.76333 0.82630 1.20090 1.23422 1.18777 1.18937 0.91745 0.89797 1.05838 1.19934 0.90128 0.98812 1.05830 0.89167 0.90016 0.93750 0.82560 0.83814 0.72636 0.79952 0.85179 0.74402 0.94541 0.89320 0.91391 0.90079 0.86598 0.95587 0.93314 0.90066 0.80835 0.93834 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.27 10.00 71.23 0.71 -2.56 16 2 C -0.08 -2.49 5.88 -19.83 -0.12 -2.60 16 3 C -0.13 -3.60 9.61 22.01 0.21 -3.39 16 4 C -0.08 -2.32 10.05 22.25 0.22 -2.10 16 5 C 0.01 0.40 7.23 39.45 0.29 0.69 16 6 N -0.53 -16.87 11.27 -192.03 -2.16 -19.04 16 7 C 0.27 6.62 12.49 180.06 2.25 8.87 16 8 N -0.48 -12.71 2.29 -524.32 -1.20 -13.91 16 9 C 0.10 1.72 6.64 85.63 0.57 2.29 16 10 C 0.49 13.37 7.86 87.66 0.69 14.06 16 11 O -0.58 -23.68 16.09 -3.02 -0.05 -23.73 16 12 N -0.70 -15.00 4.45 -442.54 -1.97 -16.96 16 13 C 0.14 3.75 2.52 44.99 0.11 3.87 16 14 H 0.04 1.59 7.05 -2.39 -0.02 1.57 16 15 C -0.15 -3.13 9.48 71.98 0.68 -2.45 16 16 C -0.12 -2.67 4.29 30.59 0.13 -2.54 16 17 C 0.17 5.31 2.84 44.99 0.13 5.43 16 18 H 0.05 1.55 7.56 -2.38 -0.02 1.53 16 19 C -0.16 -4.51 9.49 71.98 0.68 -3.83 16 20 N -0.75 -33.36 4.30 -322.93 -1.39 -34.75 16 21 C -0.21 -11.77 10.41 84.03 0.87 -10.89 16 22 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 23 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 24 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 25 Si 0.94 47.97 27.74 68.60 1.90 49.87 16 26 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 28 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 29 C 0.05 1.56 6.87 38.86 0.27 1.83 16 30 C -0.13 -4.53 9.69 22.32 0.22 -4.32 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.17 8.08 -2.38 -0.02 2.15 16 33 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.26 3.11 8.06 -2.91 -0.02 3.08 16 37 H 0.18 1.01 8.13 -2.39 -0.02 0.99 16 38 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.42 5.22 8.60 -92.70 -0.80 4.42 16 40 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.36 16.02 5.66 -92.71 -0.52 15.50 16 49 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -90.87 414.89 3.39 -87.48 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.44 Total: 35.11 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 8.39 Total: -0.83 kcal Atomic # 7 Polarization: -141.48 SS G_CDS: -6.42 Total: -147.90 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.90 Total: 49.87 kcal Total: -90.87 3.39 -87.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135274272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.432 kcal (2) G-P(sol) polarization free energy of solvation -90.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds