Wall clock time and date at job start Wed Apr 1 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38770 * 119.77397 * 2 1 4 4 C 1.36604 * 120.66583 * 179.97438 * 3 2 1 5 5 C 1.39739 * 119.88897 * 0.04366 * 4 3 2 6 6 N 1.35779 * 133.60184 * 180.02562 * 5 4 3 7 7 C 1.30118 * 109.64630 * 179.69376 * 6 5 4 8 8 N 1.36039 * 110.09104 * 0.39720 * 7 6 5 9 9 C 1.46501 * 126.34427 * 179.86813 * 8 7 6 10 10 C 1.50703 * 109.47670 * 264.69343 * 9 8 7 11 11 O 1.21282 * 119.99513 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99953 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99608 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47437 * 34.99780 * 13 12 10 15 15 C 1.53001 * 109.47050 * 274.99670 * 13 12 10 16 16 C 1.53001 * 109.47107 * 154.99829 * 13 12 10 17 17 C 1.52997 * 109.47049 * 294.99725 * 16 13 12 18 18 H 1.09001 * 109.46832 * 55.00084 * 17 16 13 19 19 C 1.53006 * 109.47127 * 174.99763 * 17 16 13 20 20 N 1.46492 * 109.47244 * 295.00135 * 17 16 13 21 21 C 1.36940 * 120.00114 * 155.00043 * 20 17 16 22 22 H 1.07993 * 119.99751 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00020 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00145 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99789 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46987 * 90.00577 * 25 23 21 27 27 H 1.48502 * 109.47063 * 210.00262 * 25 23 21 28 28 H 1.48499 * 109.47321 * 330.00080 * 25 23 21 29 29 C 1.38048 * 107.30526 * 359.61098 * 8 7 6 30 30 C 1.37855 * 119.77026 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46982 * 269.98256 * 1 2 3 32 32 H 1.09003 * 109.46469 * 29.97759 * 1 2 3 33 33 H 1.08992 * 109.47082 * 149.97434 * 1 2 3 34 34 H 1.07998 * 119.67397 * 0.02594 * 3 2 1 35 35 H 1.08007 * 120.05952 * 180.02562 * 4 3 2 36 36 H 1.07999 * 124.95416 * 180.26387 * 7 6 5 37 37 H 1.09000 * 109.46919 * 144.68714 * 9 8 7 38 38 H 1.09000 * 109.47122 * 24.69546 * 9 8 7 39 39 H 0.97001 * 120.00414 * 359.97438 * 12 10 9 40 40 H 1.09006 * 109.47111 * 299.99943 * 15 13 12 41 41 H 1.09000 * 109.47307 * 60.00051 * 15 13 12 42 42 H 1.09000 * 109.47516 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47252 * 174.99920 * 16 13 12 44 44 H 1.09006 * 109.47074 * 55.00113 * 16 13 12 45 45 H 1.09001 * 109.46998 * 59.99868 * 19 17 16 46 46 H 1.09000 * 109.47050 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.46801 * 300.00272 * 19 17 16 48 48 H 0.97005 * 120.00153 * 334.99565 * 20 17 16 49 49 H 0.96993 * 119.99993 * 179.97438 * 24 23 21 50 50 H 1.07995 * 120.15646 * 359.95906 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5620 1.2258 0.0005 5 6 4.2772 0.0252 0.0001 6 7 5.6011 -0.2761 0.0009 7 6 5.7557 -1.5680 0.0066 8 7 4.5427 -2.1839 0.0010 9 6 4.3028 -3.6291 0.0020 10 6 4.0985 -4.1055 -1.4131 11 8 4.1480 -3.3154 -2.3320 12 7 3.8598 -5.4092 -1.6574 13 6 3.6607 -5.8721 -3.0330 14 1 4.2966 -5.2967 -3.7057 15 6 2.1951 -5.6808 -3.4284 16 6 4.0258 -7.3548 -3.1300 17 6 5.5207 -7.5309 -2.8561 18 1 5.7687 -7.0843 -1.8932 19 6 5.8621 -9.0222 -2.8298 20 7 6.2918 -6.8720 -3.9131 21 6 7.5674 -6.4413 -3.6630 22 1 8.0048 -6.5871 -2.6864 23 6 8.2982 -5.8174 -4.6648 24 7 7.7650 -5.6392 -5.8549 25 14 10.0380 -5.2293 -4.3233 26 1 10.9992 -6.3156 -4.6418 27 1 10.3341 -4.0434 -5.1667 28 1 10.1639 -4.8613 -2.8902 29 6 3.5799 -1.1946 0.0001 30 6 2.1915 -1.1966 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3632 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6472 2.1346 0.0004 35 1 4.0884 2.1689 0.0009 36 1 6.7082 -2.0772 0.0125 37 1 3.4128 -3.8492 0.5915 38 1 5.1620 -4.1398 0.4368 39 1 3.8199 -6.0410 -0.9225 40 1 1.5592 -6.2564 -2.7557 41 1 1.9350 -4.6246 -3.3593 42 1 2.0468 -6.0257 -4.4517 43 1 3.7940 -7.7214 -4.1300 44 1 3.4525 -7.9190 -2.3943 45 1 5.6140 -9.4688 -3.7927 46 1 6.9271 -9.1476 -2.6342 47 1 5.2884 -9.5124 -2.0433 48 1 5.8988 -6.7407 -4.7902 49 1 8.2755 -5.2029 -6.5547 50 1 1.6504 -2.1312 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135274275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:58 Heat of formation + Delta-G solvation = 41.510025 kcal Electronic energy + Delta-G solvation = -30418.417198 eV Core-core repulsion = 26446.400569 eV Total energy + Delta-G solvation = -3972.016630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16144 -39.66905 -37.78927 -36.93329 -34.59622 -34.20792 -32.26113 -31.61431 -31.05228 -30.30352 -28.65224 -27.58937 -26.48523 -26.37434 -23.66383 -23.07177 -22.04193 -21.41517 -20.72807 -20.20441 -19.78877 -17.64591 -17.29744 -17.10137 -17.06015 -15.83652 -15.59320 -15.13098 -15.06606 -14.67256 -14.34141 -14.01153 -13.96353 -13.82079 -13.70387 -13.51052 -13.45799 -13.15138 -12.82857 -12.50857 -12.33048 -12.18307 -12.07233 -11.94983 -11.79524 -11.67869 -11.45130 -11.33851 -11.09925 -10.85917 -10.67425 -10.59795 -10.50000 -10.27200 -9.95057 -9.92259 -9.70293 -9.64958 -8.91247 -8.86449 -8.29922 -8.01048 -6.95658 -5.75749 -3.04355 0.94542 1.50163 2.38422 2.66846 2.81500 3.34277 3.43605 3.47886 3.51533 3.86204 4.28164 4.48241 4.51498 4.59453 4.66996 4.76940 4.79945 4.98159 5.05825 5.11256 5.32359 5.37242 5.40158 5.41269 5.44373 5.56992 5.57829 5.60874 5.64063 5.81333 5.84371 5.86148 5.94876 6.05744 6.06905 6.22446 6.27642 6.36669 6.38651 6.49710 6.50958 6.54676 6.61151 6.70590 6.83938 6.85637 7.01251 7.07441 7.59039 7.68047 7.90659 8.32192 8.42375 9.53638 10.10685 10.44364 11.46862 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003230 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.123131 B = 8667.293163 C =10288.011874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.061 4.061 5 C 0.043 3.957 6 N -0.497 5.497 7 C 0.277 3.723 8 N -0.476 5.476 9 C 0.092 3.908 10 C 0.493 3.507 11 O -0.511 6.511 12 N -0.712 5.712 13 C 0.145 3.855 14 H 0.106 0.894 15 C -0.160 4.160 16 C -0.131 4.131 17 C 0.173 3.827 18 H 0.044 0.956 19 C -0.166 4.166 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.064 3.936 30 C -0.107 4.107 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.214 0.786 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.395 0.605 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.034 0.966 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 3.436 15.926 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.081 4.081 5 C -0.075 4.075 6 N -0.215 5.215 7 C -0.009 4.009 8 N -0.165 5.165 9 C -0.035 4.035 10 C 0.275 3.725 11 O -0.384 6.384 12 N -0.364 5.364 13 C 0.041 3.959 14 H 0.124 0.876 15 C -0.219 4.219 16 C -0.169 4.169 17 C 0.063 3.937 18 H 0.062 0.938 19 C -0.226 4.226 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.734 3.266 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 C -0.045 4.045 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.230 0.770 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.216 0.784 49 H 0.065 0.935 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.172 4.576 15.291 22.021 hybrid contribution 0.489 -0.896 0.015 1.021 sum -14.682 3.681 15.306 21.526 Atomic orbital electron populations 1.20737 0.90862 1.02830 1.02119 1.19556 0.95815 0.92163 1.00155 1.20469 0.93447 0.97490 1.03671 1.19976 0.93168 0.95657 0.99276 1.19031 0.89503 0.92950 1.06024 1.70461 1.16649 1.12240 1.22156 1.25400 0.89759 0.88542 0.97197 1.44837 1.06310 1.05071 1.60293 1.21641 1.05926 0.79210 0.96702 1.20603 0.77780 0.83264 0.90815 1.90827 1.48544 1.53851 1.45225 1.45902 1.72739 1.07893 1.09877 1.21056 0.96095 0.95991 0.82740 0.87618 1.22177 0.96417 1.01792 1.01504 1.22175 0.98194 0.94079 1.02492 1.20204 0.88797 0.91415 0.93324 0.93781 1.22468 1.01208 0.99127 0.99819 1.42400 1.13794 1.69257 1.10790 1.19115 0.90259 1.30959 0.96573 0.91555 1.24708 0.98396 1.01606 0.95950 1.69640 1.37010 1.48403 1.02727 0.86263 0.85000 0.78088 0.77238 1.21833 1.21755 1.20859 1.18754 0.91507 0.88830 1.05419 1.19707 0.89546 0.98176 1.05357 0.91267 0.91384 0.91682 0.85599 0.85482 0.76978 0.86775 0.85620 0.77163 0.93108 0.92642 0.91622 0.90549 0.92014 0.93513 0.92888 0.94738 0.78356 0.93516 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.00 36.01 0.36 -0.49 16 2 C -0.08 -0.84 5.88 -104.56 -0.62 -1.45 16 3 C -0.13 -1.46 9.61 -39.97 -0.38 -1.84 16 4 C -0.06 -0.82 10.05 -39.61 -0.40 -1.21 16 5 C 0.04 0.68 7.23 -84.71 -0.61 0.07 16 6 N -0.50 -8.28 11.27 -12.05 -0.14 -8.42 16 7 C 0.28 3.98 12.49 -89.77 -1.12 2.86 16 8 N -0.48 -6.45 2.29 -117.08 -0.27 -6.71 16 9 C 0.09 0.93 6.64 -5.19 -0.03 0.90 16 10 C 0.49 7.13 7.86 -10.99 -0.09 7.04 16 11 O -0.51 -10.40 16.09 5.56 0.09 -10.31 16 12 N -0.71 -8.86 4.45 -53.81 -0.24 -9.10 16 13 C 0.14 2.17 2.52 -67.93 -0.17 2.00 16 14 H 0.11 2.17 7.05 -51.93 -0.37 1.81 16 15 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 16 C -0.13 -1.83 4.29 -26.73 -0.11 -1.95 16 17 C 0.17 3.05 2.84 -67.93 -0.19 2.86 16 18 H 0.04 0.78 7.56 -51.93 -0.39 0.38 16 19 C -0.17 -2.74 9.49 37.16 0.35 -2.38 16 20 N -0.72 -17.05 4.49 -53.43 -0.24 -17.29 16 21 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 25 Si 0.90 22.64 29.55 -169.99 -5.02 17.61 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.06 0.93 6.87 -83.99 -0.58 0.36 16 30 C -0.11 -1.35 9.69 -39.50 -0.38 -1.73 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.21 2.35 8.06 -52.49 -0.42 1.93 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 0.91 8.13 -51.93 -0.42 0.49 16 39 H 0.39 3.46 8.60 -40.82 -0.35 3.11 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.25 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 418.01 15.07 6.30 6.30 Total: -1.00 -37.02 418.01 -10.82 -47.84 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.15 Total: 11.24 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.87 Total: -3.65 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.16 Total: -69.04 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -37.02 -10.82 -47.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135274275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.354 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds