Wall clock time and date at job start Wed Apr 1 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38770 * 119.77397 * 2 1 4 4 C 1.36604 * 120.66583 * 179.97438 * 3 2 1 5 5 C 1.39739 * 119.88897 * 0.04366 * 4 3 2 6 6 N 1.35779 * 133.60184 * 180.02562 * 5 4 3 7 7 C 1.30118 * 109.64630 * 179.69376 * 6 5 4 8 8 N 1.36039 * 110.09104 * 0.39720 * 7 6 5 9 9 C 1.46501 * 126.34427 * 179.86813 * 8 7 6 10 10 C 1.50703 * 109.47670 * 264.69343 * 9 8 7 11 11 O 1.21282 * 119.99513 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99953 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99608 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47437 * 34.99780 * 13 12 10 15 15 C 1.53001 * 109.47050 * 274.99670 * 13 12 10 16 16 C 1.53001 * 109.47107 * 154.99829 * 13 12 10 17 17 C 1.52997 * 109.47049 * 294.99725 * 16 13 12 18 18 H 1.09001 * 109.46832 * 55.00084 * 17 16 13 19 19 C 1.53006 * 109.47127 * 174.99763 * 17 16 13 20 20 N 1.46492 * 109.47244 * 295.00135 * 17 16 13 21 21 C 1.36940 * 120.00114 * 155.00043 * 20 17 16 22 22 H 1.07993 * 119.99751 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00020 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00145 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99789 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46987 * 90.00577 * 25 23 21 27 27 H 1.48502 * 109.47063 * 210.00262 * 25 23 21 28 28 H 1.48499 * 109.47321 * 330.00080 * 25 23 21 29 29 C 1.38048 * 107.30526 * 359.61098 * 8 7 6 30 30 C 1.37855 * 119.77026 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46982 * 269.98256 * 1 2 3 32 32 H 1.09003 * 109.46469 * 29.97759 * 1 2 3 33 33 H 1.08992 * 109.47082 * 149.97434 * 1 2 3 34 34 H 1.07998 * 119.67397 * 0.02594 * 3 2 1 35 35 H 1.08007 * 120.05952 * 180.02562 * 4 3 2 36 36 H 1.07999 * 124.95416 * 180.26387 * 7 6 5 37 37 H 1.09000 * 109.46919 * 144.68714 * 9 8 7 38 38 H 1.09000 * 109.47122 * 24.69546 * 9 8 7 39 39 H 0.97001 * 120.00414 * 359.97438 * 12 10 9 40 40 H 1.09006 * 109.47111 * 299.99943 * 15 13 12 41 41 H 1.09000 * 109.47307 * 60.00051 * 15 13 12 42 42 H 1.09000 * 109.47516 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47252 * 174.99920 * 16 13 12 44 44 H 1.09006 * 109.47074 * 55.00113 * 16 13 12 45 45 H 1.09001 * 109.46998 * 59.99868 * 19 17 16 46 46 H 1.09000 * 109.47050 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.46801 * 300.00272 * 19 17 16 48 48 H 0.97005 * 120.00153 * 334.99565 * 20 17 16 49 49 H 0.96993 * 119.99993 * 179.97438 * 24 23 21 50 50 H 1.07995 * 120.15646 * 359.95906 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5620 1.2258 0.0005 5 6 4.2772 0.0252 0.0001 6 7 5.6011 -0.2761 0.0009 7 6 5.7557 -1.5680 0.0066 8 7 4.5427 -2.1839 0.0010 9 6 4.3028 -3.6291 0.0020 10 6 4.0985 -4.1055 -1.4131 11 8 4.1480 -3.3154 -2.3320 12 7 3.8598 -5.4092 -1.6574 13 6 3.6607 -5.8721 -3.0330 14 1 4.2966 -5.2967 -3.7057 15 6 2.1951 -5.6808 -3.4284 16 6 4.0258 -7.3548 -3.1300 17 6 5.5207 -7.5309 -2.8561 18 1 5.7687 -7.0843 -1.8932 19 6 5.8621 -9.0222 -2.8298 20 7 6.2918 -6.8720 -3.9131 21 6 7.5674 -6.4413 -3.6630 22 1 8.0048 -6.5871 -2.6864 23 6 8.2982 -5.8174 -4.6648 24 7 7.7650 -5.6392 -5.8549 25 14 10.0380 -5.2293 -4.3233 26 1 10.9992 -6.3156 -4.6418 27 1 10.3341 -4.0434 -5.1667 28 1 10.1639 -4.8613 -2.8902 29 6 3.5799 -1.1946 0.0001 30 6 2.1915 -1.1966 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3632 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6472 2.1346 0.0004 35 1 4.0884 2.1689 0.0009 36 1 6.7082 -2.0772 0.0125 37 1 3.4128 -3.8492 0.5915 38 1 5.1620 -4.1398 0.4368 39 1 3.8199 -6.0410 -0.9225 40 1 1.5592 -6.2564 -2.7557 41 1 1.9350 -4.6246 -3.3593 42 1 2.0468 -6.0257 -4.4517 43 1 3.7940 -7.7214 -4.1300 44 1 3.4525 -7.9190 -2.3943 45 1 5.6140 -9.4688 -3.7927 46 1 6.9271 -9.1476 -2.6342 47 1 5.2884 -9.5124 -2.0433 48 1 5.8988 -6.7407 -4.7902 49 1 8.2755 -5.2029 -6.5547 50 1 1.6504 -2.1312 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135274275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:57 Heat of formation + Delta-G solvation = 17.917700 kcal Electronic energy + Delta-G solvation = -30419.440238 eV Core-core repulsion = 26446.400569 eV Total energy + Delta-G solvation = -3973.039670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.15280 -40.83481 -38.72289 -38.28838 -36.09773 -35.25131 -34.03024 -32.55830 -32.20159 -31.28997 -30.42359 -28.53672 -27.58338 -27.29865 -25.66595 -24.02677 -23.16447 -22.35827 -21.93513 -21.24966 -21.17780 -19.31606 -18.50697 -18.27982 -17.99487 -17.06272 -16.63239 -16.52785 -16.18676 -15.99397 -15.64123 -15.43389 -15.23405 -14.89881 -14.79985 -14.54366 -14.40520 -14.32365 -14.17883 -13.64529 -13.47725 -13.30542 -13.13364 -13.02389 -12.93789 -12.79415 -12.76278 -12.67902 -12.33551 -12.25950 -12.21120 -12.20017 -11.83189 -11.68649 -11.55048 -11.41623 -10.98276 -10.92652 -10.84109 -10.03005 -9.27043 -8.98684 -8.95053 -7.92782 -5.17771 -0.02064 0.54234 1.42188 1.44258 1.44710 1.51303 1.58796 1.81829 2.32204 2.55648 2.87717 3.32947 3.42773 3.58557 3.69936 3.74357 3.85258 3.98598 4.02693 4.08397 4.13231 4.14863 4.34863 4.40222 4.46552 4.51881 4.54769 4.68210 4.73216 4.79473 4.82541 4.85312 4.90674 4.95459 5.03951 5.11558 5.13664 5.21652 5.24251 5.34601 5.42359 5.42973 5.51570 5.56824 5.62863 5.65210 5.65966 5.97079 6.10249 6.30369 6.59487 6.86021 7.31043 7.36189 8.17661 8.35710 9.31246 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003230 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.123131 B = 8667.293163 C =10288.011874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.074 4.074 3 C -0.126 4.126 4 C -0.083 4.083 5 C 0.001 3.999 6 N -0.536 5.536 7 C 0.263 3.737 8 N -0.476 5.476 9 C 0.096 3.904 10 C 0.488 3.512 11 O -0.580 6.580 12 N -0.696 5.696 13 C 0.149 3.851 14 H 0.041 0.959 15 C -0.150 4.150 16 C -0.117 4.117 17 C 0.164 3.836 18 H 0.051 0.949 19 C -0.158 4.158 20 N -0.733 5.733 21 C -0.221 4.221 22 H 0.075 0.925 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.959 3.041 26 H -0.287 1.287 27 H -0.306 1.306 28 H -0.267 1.267 29 C 0.047 3.953 30 C -0.121 4.121 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.236 0.764 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.418 0.582 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.037 0.963 46 H 0.029 0.971 47 H 0.079 0.921 48 H 0.368 0.632 49 H 0.245 0.755 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 1.613 18.957 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.116 4.116 6 N -0.255 5.255 7 C -0.023 4.023 8 N -0.166 5.166 9 C -0.029 4.029 10 C 0.273 3.727 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.044 3.956 14 H 0.059 0.941 15 C -0.208 4.208 16 C -0.155 4.155 17 C 0.056 3.944 18 H 0.069 0.931 19 C -0.217 4.217 20 N -0.373 5.373 21 C -0.353 4.353 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.789 3.211 26 H -0.214 1.214 27 H -0.234 1.234 28 H -0.191 1.191 29 C -0.062 4.062 30 C -0.141 4.141 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.252 0.748 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.256 0.744 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.199 0.801 49 H 0.054 0.946 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.626 2.666 18.424 25.636 hybrid contribution 1.124 -0.369 -0.872 1.469 sum -16.502 2.298 17.552 24.201 Atomic orbital electron populations 1.20806 0.88125 1.03733 1.03567 1.20058 0.97767 0.91610 0.98143 1.20868 0.92728 0.99045 1.01968 1.20274 0.94321 0.95391 1.00214 1.19518 0.89663 0.94576 1.07813 1.70372 1.17712 1.13788 1.23664 1.25874 0.91017 0.88455 0.96911 1.44979 1.05708 1.06180 1.59685 1.21967 1.09365 0.77545 0.94052 1.21398 0.76253 0.83096 0.91964 1.90811 1.51675 1.55662 1.47722 1.45728 1.71565 1.07924 1.09652 1.20772 0.96225 0.95647 0.82949 0.94054 1.22066 0.95333 1.01000 1.02434 1.22076 0.95922 0.93762 1.03785 1.20545 0.90453 0.91710 0.91661 0.93117 1.22325 1.00436 0.97962 1.01010 1.42653 1.13337 1.69665 1.11651 1.19521 0.91274 1.28230 0.96262 0.90693 1.25437 1.02030 1.03562 0.96213 1.69801 1.38200 1.50671 1.03645 0.85341 0.81285 0.76978 0.77485 1.21416 1.23393 1.19150 1.19108 0.92496 0.88829 1.05781 1.20049 0.88850 0.99641 1.05604 0.89367 0.90089 0.91218 0.82537 0.84947 0.74791 0.82678 0.82146 0.74434 0.89467 0.94797 0.91714 0.91110 0.87071 0.94341 0.95166 0.90262 0.80119 0.94598 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.00 71.24 0.71 -0.62 16 2 C -0.07 -1.52 5.88 -19.83 -0.12 -1.64 16 3 C -0.13 -2.68 9.61 22.01 0.21 -2.47 16 4 C -0.08 -2.25 10.05 22.25 0.22 -2.03 16 5 C 0.00 0.05 7.23 39.45 0.29 0.33 16 6 N -0.54 -18.78 11.27 -192.03 -2.16 -20.94 16 7 C 0.26 7.74 12.49 180.05 2.25 9.99 16 8 N -0.48 -12.70 2.29 -524.32 -1.20 -13.90 16 9 C 0.10 1.71 6.64 85.63 0.57 2.28 16 10 C 0.49 13.63 7.86 87.66 0.69 14.32 16 11 O -0.58 -24.47 16.09 -3.04 -0.05 -24.52 16 12 N -0.70 -15.66 4.45 -442.54 -1.97 -17.63 16 13 C 0.15 4.30 2.52 44.99 0.11 4.41 16 14 H 0.04 1.77 7.05 -2.39 -0.02 1.76 16 15 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 16 C -0.12 -2.95 4.29 30.59 0.13 -2.82 16 17 C 0.16 5.45 2.84 44.99 0.13 5.58 16 18 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 19 C -0.16 -4.72 9.49 71.98 0.68 -4.04 16 20 N -0.73 -34.95 4.49 -322.95 -1.45 -36.40 16 21 C -0.22 -11.95 9.93 84.03 0.83 -11.12 16 22 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 25 Si 0.96 47.56 29.55 68.60 2.03 49.59 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 C 0.05 1.37 6.87 38.86 0.27 1.64 16 30 C -0.12 -2.90 9.69 22.32 0.22 -2.68 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.24 5.24 8.06 -2.91 -0.02 5.22 16 37 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.16 1.73 8.13 -2.39 -0.02 1.71 16 39 H 0.42 5.46 8.60 -92.71 -0.80 4.66 16 40 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.37 19.61 7.80 -92.70 -0.72 18.89 16 49 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -88.67 418.01 3.25 -85.42 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.57 Total: 35.65 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 8.35 Total: 3.94 kcal Atomic # 7 Polarization: -143.58 SS G_CDS: -6.50 Total: -150.08 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -88.67 3.25 -85.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135274275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.340 kcal (2) G-P(sol) polarization free energy of solvation -88.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds