Wall clock time and date at job start Wed Apr 1 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50700 * 125.68270 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46801 * 125.58251 * 9 8 7 11 11 O 1.21276 * 120.00377 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00142 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47310 * 325.00128 * 13 12 10 15 15 C 1.53000 * 109.47130 * 85.00113 * 13 12 10 16 16 C 1.53005 * 109.47299 * 205.00261 * 13 12 10 17 17 C 1.52998 * 109.46919 * 64.99971 * 16 13 12 18 18 H 1.09001 * 109.46970 * 304.99837 * 17 16 13 19 19 C 1.53001 * 109.46813 * 185.00149 * 17 16 13 20 20 N 1.46497 * 109.47590 * 65.00306 * 17 16 13 21 21 C 1.36932 * 120.00274 * 204.99956 * 20 17 16 22 22 H 1.08006 * 119.99891 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00237 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00318 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99931 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47074 * 89.99527 * 25 23 21 27 27 H 1.48495 * 109.47143 * 209.99613 * 25 23 21 28 28 H 1.48501 * 109.46723 * 329.99507 * 25 23 21 29 29 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 30 30 C 1.32563 * 109.15839 * 359.49816 * 29 8 7 31 31 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 34 34 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 35 35 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 36 36 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 37 37 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 38 38 H 1.08997 * 109.47746 * 245.58121 * 9 8 7 39 39 H 1.09008 * 109.47342 * 5.58380 * 9 8 7 40 40 H 0.97001 * 119.99628 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.46880 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.47055 * 300.00161 * 15 13 12 43 43 H 1.09000 * 109.47384 * 60.00211 * 15 13 12 44 44 H 1.09000 * 109.47344 * 185.00162 * 16 13 12 45 45 H 1.08996 * 109.46787 * 304.99685 * 16 13 12 46 46 H 1.09001 * 109.47619 * 299.99684 * 19 17 16 47 47 H 1.08995 * 109.47262 * 60.00256 * 19 17 16 48 48 H 1.09005 * 109.47225 * 179.97438 * 19 17 16 49 49 H 0.97001 * 119.99391 * 24.99354 * 20 17 16 50 50 H 0.96997 * 120.00140 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7825 0.0269 10 6 2.0539 -5.2674 1.1933 11 8 1.5359 -4.4681 1.9440 12 7 1.8935 -6.5893 1.4015 13 6 1.0939 -7.0606 2.5349 14 1 1.2287 -6.3858 3.3802 15 6 -0.3835 -7.0927 2.1386 16 6 1.5471 -8.4679 2.9286 17 6 2.9870 -8.4147 3.4433 18 1 3.6241 -7.9471 2.6926 19 6 3.4827 -9.8357 3.7193 20 7 3.0348 -7.6319 4.6806 21 6 4.1975 -7.0128 5.0547 22 1 5.0794 -7.1019 4.4377 23 6 4.2426 -6.2707 6.2269 24 7 5.3603 -5.6760 6.5867 25 14 2.7174 -6.1171 7.2945 26 1 2.6949 -7.2211 8.2873 27 1 2.7395 -4.8131 8.0046 28 1 1.5053 -6.1949 6.4400 29 7 1.8238 -2.4817 0.0144 30 6 2.2188 -1.2163 0.0076 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6620 2.1139 -0.0008 35 1 4.1467 2.0889 0.0001 36 1 5.3465 -0.0152 0.0024 37 1 5.0285 -2.8497 0.0047 38 1 2.4365 -5.1445 -0.9026 39 1 3.8945 -5.1599 0.1185 40 1 2.3074 -7.2286 0.8008 41 1 -0.9783 -7.4439 2.9818 42 1 -0.7063 -6.0901 1.8581 43 1 -0.5183 -7.7676 1.2933 44 1 0.8952 -8.8537 3.7124 45 1 1.4961 -9.1227 2.0587 46 1 2.8457 -10.3034 4.4699 47 1 3.4472 -10.4181 2.7987 48 1 4.5087 -9.7978 4.0855 49 1 2.2427 -7.5522 5.2349 50 1 5.3919 -5.1577 7.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135678044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:08 Heat of formation + Delta-G solvation = 56.081562 kcal Electronic energy + Delta-G solvation = -30238.460483 eV Core-core repulsion = 26267.075723 eV Total energy + Delta-G solvation = -3971.384760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.79019 -39.43367 -37.68192 -36.77626 -34.59315 -34.39178 -32.32776 -31.93988 -30.78297 -30.00039 -29.16506 -27.65982 -27.01211 -26.32529 -23.29119 -22.88156 -22.51505 -21.53753 -20.57815 -19.89431 -19.71929 -17.70996 -17.51305 -17.07179 -16.60266 -15.96802 -15.78639 -15.48949 -14.92627 -14.63012 -14.29505 -14.16142 -13.92943 -13.65207 -13.60226 -13.32523 -13.07484 -12.87720 -12.77546 -12.55070 -12.39386 -12.17267 -11.98795 -11.91370 -11.86374 -11.79027 -11.62535 -11.49371 -11.11757 -10.87135 -10.63330 -10.61411 -10.38968 -10.21162 -9.94794 -9.89420 -9.51089 -9.35925 -8.85027 -8.64024 -8.57907 -7.77777 -7.18038 -5.69426 -3.03389 0.67085 1.25716 2.56741 2.82586 3.17018 3.44089 3.45110 3.49324 3.53183 3.68926 4.12368 4.32766 4.59305 4.67589 4.67973 4.84109 5.03724 5.11967 5.15705 5.24139 5.30911 5.37641 5.43033 5.43685 5.49693 5.53986 5.60437 5.66496 5.70822 5.79271 5.85177 5.86032 5.91980 5.96760 5.99405 6.08142 6.20243 6.24486 6.35227 6.38458 6.45540 6.49751 6.62629 6.67539 6.82529 6.97578 7.03624 7.07928 7.93497 7.97963 8.06035 8.49681 8.75016 9.28841 10.02155 10.21413 11.49326 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003117 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.823137 B = 8982.202686 C =10045.164620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.038 4.038 3 C -0.119 4.119 4 C -0.142 4.142 5 C 0.050 3.950 6 N -0.361 5.361 7 C -0.088 4.088 8 C 0.081 3.919 9 C -0.060 4.060 10 C 0.518 3.482 11 O -0.514 6.514 12 N -0.722 5.722 13 C 0.145 3.855 14 H 0.097 0.903 15 C -0.161 4.161 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.055 0.945 19 C -0.165 4.165 20 N -0.745 5.745 21 C -0.235 4.235 22 H 0.087 0.913 23 C 0.005 3.995 24 N -0.937 5.937 25 Si 0.881 3.119 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.276 1.276 29 N -0.457 5.457 30 C 0.220 3.780 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.394 0.606 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.359 0.641 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 7.126 -19.807 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.041 4.041 3 C -0.143 4.143 4 C -0.163 4.163 5 C -0.072 4.072 6 N -0.033 5.033 7 C -0.220 4.220 8 C -0.053 4.053 9 C -0.101 4.101 10 C 0.303 3.697 11 O -0.388 6.388 12 N -0.374 5.374 13 C 0.041 3.959 14 H 0.115 0.885 15 C -0.219 4.219 16 C -0.173 4.173 17 C 0.068 3.932 18 H 0.073 0.927 19 C -0.226 4.226 20 N -0.388 5.388 21 C -0.365 4.365 22 H 0.105 0.895 23 C -0.190 4.190 24 N -0.585 5.585 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.202 1.202 29 N -0.176 5.176 30 C -0.024 4.024 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.201 0.799 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.192 0.808 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.087 7.504 -19.230 21.825 hybrid contribution 0.345 0.101 0.761 0.841 sum -6.742 7.605 -18.470 21.081 Atomic orbital electron populations 1.20665 0.89096 1.03723 1.02702 1.19023 0.96909 0.88460 0.99692 1.20867 0.93729 0.97713 1.01993 1.20719 0.94769 0.97036 1.03758 1.21571 0.98608 0.83364 1.03646 1.42739 1.08817 1.05944 1.45777 1.22384 1.01047 0.80598 1.17947 1.20048 0.88269 0.94972 1.02022 1.19986 1.02290 0.89002 0.98789 1.20148 0.81124 0.82416 0.86054 1.90752 1.47636 1.54103 1.46323 1.45901 1.54070 1.06633 1.30795 1.20927 0.89024 0.96321 0.89634 0.88469 1.22185 0.96587 1.01991 1.01182 1.22212 0.98855 0.95264 1.00948 1.20191 0.92869 0.90849 0.89314 0.92739 1.22425 1.02110 0.98489 0.99532 1.42776 1.11485 1.60560 1.24019 1.18999 0.89398 1.23257 1.04875 0.89472 1.24619 0.96434 0.99831 0.98138 1.69691 1.25345 1.38049 1.25394 0.86581 0.84108 0.77137 0.80961 1.21288 1.21916 1.20198 1.70591 1.29179 0.97454 1.20412 1.20762 0.80136 0.94400 1.07084 0.90751 0.91084 0.90092 0.84348 0.83425 0.82160 0.79932 0.87701 0.87303 0.77312 0.92146 0.92334 0.93021 0.90940 0.91590 0.93683 0.94368 0.92480 0.80783 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.03 36.01 0.36 -0.75 16 2 C -0.04 -0.48 5.90 -104.40 -0.62 -1.10 16 3 C -0.12 -1.15 9.72 -39.54 -0.38 -1.54 16 4 C -0.14 -1.24 9.98 -39.91 -0.40 -1.64 16 5 C 0.05 0.52 10.95 -16.65 -0.18 0.34 16 6 N -0.36 -5.05 2.95 -62.66 -0.18 -5.23 16 7 C -0.09 -1.24 11.63 -16.43 -0.19 -1.43 16 8 C 0.08 1.27 5.85 -82.98 -0.49 0.79 16 9 C -0.06 -0.78 6.26 -29.04 -0.18 -0.96 16 10 C 0.52 8.85 7.78 -10.98 -0.09 8.77 16 11 O -0.51 -11.54 15.22 5.56 0.08 -11.46 16 12 N -0.72 -10.48 4.45 -53.81 -0.24 -10.72 16 13 C 0.15 2.34 2.52 -67.93 -0.17 2.17 16 14 H 0.10 2.06 7.06 -51.93 -0.37 1.69 16 15 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 16 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 17 C 0.18 3.24 2.84 -67.93 -0.19 3.05 16 18 H 0.05 1.03 7.56 -51.93 -0.39 0.63 16 19 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 20 N -0.75 -17.58 4.30 -53.43 -0.23 -17.81 16 21 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 22 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.94 -30.24 13.97 55.49 0.78 -29.46 16 25 Si 0.88 23.31 27.74 -169.99 -4.71 18.59 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 28 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 29 N -0.46 -8.07 10.66 -9.01 -0.10 -8.17 16 30 C 0.22 3.46 7.52 -156.04 -1.17 2.29 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.11 1.14 8.10 -51.92 -0.42 0.72 16 40 H 0.39 4.31 8.60 -40.82 -0.35 3.95 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.36 8.55 5.66 -40.82 -0.23 8.32 16 50 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 413.35 15.07 6.23 6.23 Total: -1.00 -39.53 413.35 -9.85 -49.38 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.11 Total: 11.85 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -3.36 Total: -3.21 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: 0.03 Total: -71.39 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -39.53 -9.85 -49.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135678044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.463 kcal (2) G-P(sol) polarization free energy of solvation -39.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds