Wall clock time and date at job start Wed Apr 1 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50700 * 125.68270 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46801 * 125.58251 * 9 8 7 11 11 O 1.21276 * 120.00377 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00142 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47310 * 325.00128 * 13 12 10 15 15 C 1.53000 * 109.47130 * 85.00113 * 13 12 10 16 16 C 1.53005 * 109.47299 * 205.00261 * 13 12 10 17 17 C 1.52998 * 109.46919 * 64.99971 * 16 13 12 18 18 H 1.09001 * 109.46970 * 304.99837 * 17 16 13 19 19 C 1.53001 * 109.46813 * 185.00149 * 17 16 13 20 20 N 1.46497 * 109.47590 * 65.00306 * 17 16 13 21 21 C 1.36932 * 120.00274 * 204.99956 * 20 17 16 22 22 H 1.08006 * 119.99891 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00237 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00318 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99931 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47074 * 89.99527 * 25 23 21 27 27 H 1.48495 * 109.47143 * 209.99613 * 25 23 21 28 28 H 1.48501 * 109.46723 * 329.99507 * 25 23 21 29 29 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 30 30 C 1.32563 * 109.15839 * 359.49816 * 29 8 7 31 31 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 34 34 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 35 35 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 36 36 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 37 37 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 38 38 H 1.08997 * 109.47746 * 245.58121 * 9 8 7 39 39 H 1.09008 * 109.47342 * 5.58380 * 9 8 7 40 40 H 0.97001 * 119.99628 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.46880 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.47055 * 300.00161 * 15 13 12 43 43 H 1.09000 * 109.47384 * 60.00211 * 15 13 12 44 44 H 1.09000 * 109.47344 * 185.00162 * 16 13 12 45 45 H 1.08996 * 109.46787 * 304.99685 * 16 13 12 46 46 H 1.09001 * 109.47619 * 299.99684 * 19 17 16 47 47 H 1.08995 * 109.47262 * 60.00256 * 19 17 16 48 48 H 1.09005 * 109.47225 * 179.97438 * 19 17 16 49 49 H 0.97001 * 119.99391 * 24.99354 * 20 17 16 50 50 H 0.96997 * 120.00140 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7825 0.0269 10 6 2.0539 -5.2674 1.1933 11 8 1.5359 -4.4681 1.9440 12 7 1.8935 -6.5893 1.4015 13 6 1.0939 -7.0606 2.5349 14 1 1.2287 -6.3858 3.3802 15 6 -0.3835 -7.0927 2.1386 16 6 1.5471 -8.4679 2.9286 17 6 2.9870 -8.4147 3.4433 18 1 3.6241 -7.9471 2.6926 19 6 3.4827 -9.8357 3.7193 20 7 3.0348 -7.6319 4.6806 21 6 4.1975 -7.0128 5.0547 22 1 5.0794 -7.1019 4.4377 23 6 4.2426 -6.2707 6.2269 24 7 5.3603 -5.6760 6.5867 25 14 2.7174 -6.1171 7.2945 26 1 2.6949 -7.2211 8.2873 27 1 2.7395 -4.8131 8.0046 28 1 1.5053 -6.1949 6.4400 29 7 1.8238 -2.4817 0.0144 30 6 2.2188 -1.2163 0.0076 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6620 2.1139 -0.0008 35 1 4.1467 2.0889 0.0001 36 1 5.3465 -0.0152 0.0024 37 1 5.0285 -2.8497 0.0047 38 1 2.4365 -5.1445 -0.9026 39 1 3.8945 -5.1599 0.1185 40 1 2.3074 -7.2286 0.8008 41 1 -0.9783 -7.4439 2.9818 42 1 -0.7063 -6.0901 1.8581 43 1 -0.5183 -7.7676 1.2933 44 1 0.8952 -8.8537 3.7124 45 1 1.4961 -9.1227 2.0587 46 1 2.8457 -10.3034 4.4699 47 1 3.4472 -10.4181 2.7987 48 1 4.5087 -9.7978 4.0855 49 1 2.2427 -7.5522 5.2349 50 1 5.3919 -5.1577 7.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135678044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:07 Heat of formation + Delta-G solvation = 29.011342 kcal Electronic energy + Delta-G solvation = -30239.634336 eV Core-core repulsion = 26267.075723 eV Total energy + Delta-G solvation = -3972.558613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.75085 -40.74437 -38.68760 -38.17287 -36.05967 -35.45002 -34.08322 -33.26991 -32.00307 -31.17173 -30.81555 -28.62789 -27.87403 -27.57608 -25.34634 -23.85320 -23.51302 -22.60602 -21.88929 -21.25283 -21.04128 -19.70551 -18.56389 -18.09492 -17.69051 -17.21437 -16.80037 -16.68938 -16.35631 -16.10162 -15.73918 -15.28014 -15.10117 -14.97229 -14.85395 -14.61662 -14.27553 -14.19315 -14.07673 -13.90484 -13.58719 -13.40472 -13.35400 -13.10081 -12.98505 -12.79677 -12.71522 -12.62358 -12.57916 -12.43856 -12.39184 -11.99221 -11.85970 -11.67083 -11.53205 -11.42081 -11.02851 -10.96937 -10.71478 -9.89582 -9.60590 -9.26131 -8.70517 -8.02630 -5.31099 -0.15996 0.34952 1.30371 1.35768 1.40113 1.66114 1.82130 1.89636 2.44127 2.46348 2.61003 3.21122 3.31157 3.48196 3.67170 3.76209 3.84010 3.94224 4.03287 4.08019 4.17167 4.28009 4.33738 4.37795 4.45348 4.53614 4.56246 4.67748 4.70625 4.74097 4.78585 4.80748 4.83724 4.93725 4.95149 5.02572 5.07616 5.10056 5.17691 5.24096 5.34478 5.35560 5.41489 5.61256 5.63342 5.68956 5.72383 5.80815 6.18286 6.22867 6.77242 6.95542 7.10936 7.52322 7.90916 8.05502 9.19635 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003117 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.823137 B = 8982.202686 C =10045.164620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.080 4.080 3 C -0.100 4.100 4 C -0.134 4.134 5 C 0.030 3.970 6 N -0.369 5.369 7 C -0.101 4.101 8 C 0.048 3.952 9 C -0.052 4.052 10 C 0.509 3.491 11 O -0.578 6.578 12 N -0.708 5.708 13 C 0.144 3.856 14 H 0.041 0.959 15 C -0.150 4.150 16 C -0.120 4.120 17 C 0.167 3.833 18 H 0.047 0.953 19 C -0.157 4.157 20 N -0.750 5.750 21 C -0.208 4.208 22 H 0.059 0.941 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.943 3.057 26 H -0.273 1.273 27 H -0.305 1.305 28 H -0.262 1.262 29 N -0.507 5.507 30 C 0.193 3.807 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.175 0.825 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.210 0.790 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.414 0.586 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.049 0.951 47 H 0.080 0.920 48 H 0.026 0.974 49 H 0.359 0.641 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 6.686 -21.710 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.154 4.154 5 C -0.091 4.091 6 N -0.040 5.040 7 C -0.233 4.233 8 C -0.085 4.085 9 C -0.092 4.092 10 C 0.295 3.705 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.039 3.961 14 H 0.059 0.941 15 C -0.209 4.209 16 C -0.158 4.158 17 C 0.060 3.940 18 H 0.066 0.934 19 C -0.216 4.216 20 N -0.393 5.393 21 C -0.340 4.340 22 H 0.077 0.923 23 C -0.257 4.257 24 N -0.638 5.638 25 Si 0.772 3.228 26 H -0.198 1.198 27 H -0.233 1.233 28 H -0.187 1.187 29 N -0.227 5.227 30 C -0.051 4.051 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.193 0.807 35 H 0.209 0.791 36 H 0.209 0.791 37 H 0.227 0.773 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.251 0.749 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.046 0.954 49 H 0.192 0.808 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.743 6.971 -21.204 23.625 hybrid contribution 0.611 0.312 1.234 1.411 sum -7.132 7.283 -19.971 22.421 Atomic orbital electron populations 1.20613 0.88475 1.03118 1.03214 1.19411 0.97814 0.88598 1.02393 1.21404 0.94485 0.97962 0.98458 1.21334 0.94637 0.98134 1.01328 1.22362 1.00351 0.82755 1.03667 1.42977 1.08545 1.06917 1.45525 1.22833 1.01807 0.80809 1.17811 1.20563 0.88657 0.96226 1.03019 1.20079 1.03083 0.87922 0.98105 1.20919 0.80606 0.82592 0.86339 1.90722 1.50339 1.55810 1.48791 1.45797 1.53395 1.06428 1.30464 1.20812 0.90842 0.95977 0.88461 0.94108 1.22076 0.94811 1.01247 1.02743 1.22130 0.95869 0.94895 1.02885 1.20527 0.95636 0.90923 0.86956 0.93443 1.22280 1.00108 0.97542 1.01685 1.42875 1.09698 1.60852 1.25907 1.18998 0.90018 1.21497 1.03448 0.92329 1.25340 0.99255 1.00903 1.00211 1.69856 1.27675 1.40144 1.26157 0.85574 0.81159 0.76648 0.79448 1.19848 1.23293 1.18739 1.70507 1.30730 0.98879 1.22596 1.21316 0.81440 0.94880 1.07415 0.89730 0.88564 0.93634 0.80725 0.79118 0.79113 0.77300 0.84717 0.84690 0.74871 0.91186 0.95047 0.89776 0.90039 0.86897 0.93229 0.90114 0.95445 0.80791 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.03 71.24 0.71 -1.42 16 2 C -0.08 -2.03 5.90 -19.72 -0.12 -2.15 16 3 C -0.10 -1.71 9.72 22.30 0.22 -1.49 16 4 C -0.13 -1.95 9.98 22.06 0.22 -1.73 16 5 C 0.03 0.57 10.95 83.21 0.91 1.48 16 6 N -0.37 -10.42 2.95 -352.15 -1.04 -11.46 16 7 C -0.10 -2.90 11.63 83.19 0.97 -1.93 16 8 C 0.05 1.60 5.85 41.58 0.24 1.84 16 9 C -0.05 -1.35 6.26 29.10 0.18 -1.17 16 10 C 0.51 17.90 7.78 87.66 0.68 18.58 16 11 O -0.58 -27.69 15.22 -3.02 -0.05 -27.74 16 12 N -0.71 -19.95 4.45 -442.54 -1.97 -21.92 16 13 C 0.14 4.51 2.52 44.99 0.11 4.62 16 14 H 0.04 1.77 7.06 -2.39 -0.02 1.75 16 15 C -0.15 -3.98 9.48 71.98 0.68 -3.29 16 16 C -0.12 -3.10 4.29 30.60 0.13 -2.97 16 17 C 0.17 5.80 2.84 44.99 0.13 5.93 16 18 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16 19 C -0.16 -4.82 9.49 71.98 0.68 -4.13 16 20 N -0.75 -35.24 4.30 -322.95 -1.39 -36.63 16 21 C -0.21 -12.14 10.41 84.03 0.87 -11.27 16 22 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 23 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 24 N -0.99 -66.10 13.97 21.65 0.30 -65.80 16 25 Si 0.94 49.40 27.74 68.60 1.90 51.31 16 26 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 28 H -0.26 -12.95 6.52 99.48 0.65 -12.30 16 29 N -0.51 -19.17 10.66 -182.41 -1.94 -21.11 16 30 C 0.19 6.38 7.52 134.10 1.01 7.39 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.51 8.09 -2.39 -0.02 1.50 16 33 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.21 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.14 2.70 8.10 -2.38 -0.02 2.68 16 40 H 0.41 8.02 8.60 -92.71 -0.80 7.22 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.36 16.87 5.66 -92.71 -0.52 16.35 16 50 H 0.25 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -95.62 413.35 3.50 -92.12 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.44 Total: 36.59 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 8.11 Total: 4.63 kcal Atomic # 7 Polarization: -150.88 SS G_CDS: -6.03 Total: -156.91 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.90 Total: 51.31 kcal Total: -95.62 3.50 -92.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135678044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.134 kcal (2) G-P(sol) polarization free energy of solvation -95.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds