Wall clock time and date at job start Wed Apr 1 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36012 * 120.34164 * 2 1 4 4 C 1.40476 * 119.69919 * 180.02562 * 3 2 1 5 5 C 1.34950 * 120.29556 * 0.02562 * 4 3 2 6 6 N 1.36492 * 120.61343 * 359.97438 * 5 4 3 7 7 C 1.36832 * 132.56948 * 180.31274 * 6 5 4 8 8 C 1.35107 * 107.17801 * 180.10773 * 7 6 5 9 9 C 1.50697 * 125.68828 * 179.88177 * 8 7 6 10 10 C 1.50698 * 109.47331 * 124.71033 * 9 8 7 11 11 O 1.21284 * 120.00180 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99979 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47123 * 35.00778 * 13 12 10 15 15 C 1.53002 * 109.47520 * 275.00457 * 13 12 10 16 16 C 1.53003 * 109.47333 * 155.00547 * 13 12 10 17 17 C 1.53004 * 109.46807 * 295.00361 * 16 13 12 18 18 H 1.08995 * 109.47216 * 304.99653 * 17 16 13 19 19 C 1.52999 * 109.47083 * 184.99648 * 17 16 13 20 20 N 1.46498 * 109.47065 * 64.99542 * 17 16 13 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 17 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 17 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 17 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 N 1.33520 * 108.62529 * 359.60882 * 8 7 6 30 30 C 1.32567 * 109.15588 * 0.24799 * 29 8 7 31 31 H 1.09002 * 109.46782 * 269.93514 * 1 2 3 32 32 H 1.08999 * 109.46546 * 29.93509 * 1 2 3 33 33 H 1.08998 * 109.47103 * 149.94109 * 1 2 3 34 34 H 1.08004 * 120.15225 * 0.04647 * 3 2 1 35 35 H 1.07996 * 119.85177 * 180.02562 * 4 3 2 36 36 H 1.08002 * 119.69310 * 180.02562 * 5 4 3 37 37 H 1.07996 * 126.41277 * 359.95812 * 7 6 5 38 38 H 1.08998 * 109.47375 * 4.70784 * 9 8 7 39 39 H 1.09004 * 109.46545 * 244.70982 * 9 8 7 40 40 H 0.96999 * 119.99718 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47436 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.47185 * 300.00284 * 15 13 12 43 43 H 1.09004 * 109.46882 * 60.00056 * 15 13 12 44 44 H 1.08993 * 109.47316 * 175.00453 * 16 13 12 45 45 H 1.08998 * 109.46869 * 54.99922 * 16 13 12 46 46 H 1.09003 * 109.47054 * 59.99725 * 19 17 16 47 47 H 1.08996 * 109.47245 * 179.97438 * 19 17 16 48 48 H 1.08995 * 109.47098 * 300.00077 * 19 17 16 49 49 H 0.97001 * 120.00384 * 25.00562 * 20 17 16 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1738 0.0000 4 6 3.5987 1.1581 -0.0005 5 6 4.2664 -0.0147 -0.0016 6 7 3.5895 -1.1999 -0.0016 7 6 4.0054 -2.5035 0.0030 8 6 2.8970 -3.2760 -0.0021 9 6 2.8756 -4.7828 -0.0022 10 6 2.0542 -5.2737 1.1620 11 8 1.5366 -4.4782 1.9172 12 7 1.8938 -6.5967 1.3633 13 6 1.0958 -7.0738 2.4954 14 1 0.2655 -6.3892 2.6688 15 6 1.9735 -7.1385 3.7470 16 6 0.5499 -8.4685 2.1827 17 6 -0.4257 -8.3826 1.0073 18 1 -1.2027 -7.6523 1.2327 19 6 -1.0656 -9.7527 0.7744 20 7 0.2973 -7.9700 -0.1983 21 6 -0.3709 -7.3448 -1.2170 22 1 -1.4300 -7.1519 -1.1298 23 6 0.3130 -6.9590 -2.3617 24 7 1.6036 -7.1946 -2.4681 25 14 -0.5983 -6.1055 -3.7511 26 1 -1.1970 -4.8430 -3.2484 27 1 0.3509 -5.7999 -4.8515 28 1 -1.6733 -6.9956 -4.2583 29 7 1.8237 -2.4818 -0.0010 30 6 2.2188 -1.2164 -0.0007 31 1 -0.3633 -0.0012 1.0277 32 1 -0.3632 0.8906 -0.5128 33 1 -0.3633 -0.8894 -0.5147 34 1 1.6621 2.1138 0.0008 35 1 4.1468 2.0887 -0.0001 36 1 5.3464 -0.0154 -0.0016 37 1 5.0282 -2.8500 0.0072 38 1 3.8941 -5.1607 0.0868 39 1 2.4357 -5.1398 -0.9335 40 1 2.3075 -7.2328 0.7591 41 1 1.3798 -7.4940 4.5891 42 1 2.8038 -7.8231 3.5735 43 1 2.3623 -6.1449 3.9698 44 1 0.0311 -8.8602 3.0576 45 1 1.3750 -9.1316 1.9224 46 1 -1.6035 -10.0597 1.6714 47 1 -1.7610 -9.6914 -0.0627 48 1 -0.2886 -10.4830 0.5490 49 1 1.2485 -8.1434 -0.2766 50 1 2.0815 -6.9247 -3.2679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135678046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:15 Heat of formation + Delta-G solvation = 60.081567 kcal Electronic energy + Delta-G solvation = -31012.920804 eV Core-core repulsion = 27041.709497 eV Total energy + Delta-G solvation = -3971.211307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.57125 -39.10072 -37.49585 -36.54563 -34.38437 -34.00918 -32.25031 -31.69278 -30.54764 -29.78014 -28.47180 -27.35244 -26.79703 -26.22904 -23.57962 -22.67404 -22.31079 -21.34754 -20.18348 -20.10610 -19.19770 -17.41359 -17.10510 -16.81577 -16.22285 -15.77385 -15.55678 -15.29841 -14.73485 -14.44242 -14.14839 -13.87891 -13.73573 -13.64478 -13.18875 -13.02028 -12.95161 -12.74450 -12.59823 -12.35818 -12.11542 -11.95545 -11.74596 -11.67219 -11.62153 -11.58600 -11.51506 -11.16537 -10.84781 -10.74219 -10.64441 -10.43732 -10.26894 -10.19149 -9.82636 -9.61586 -9.59483 -8.98797 -8.86553 -8.36392 -8.15578 -7.59794 -6.86476 -5.73678 -2.98475 0.83248 1.43017 2.76645 3.07929 3.50520 3.54122 3.57799 3.59014 3.69640 4.10728 4.35963 4.49928 4.67206 4.74202 4.83906 5.05064 5.19810 5.34540 5.45543 5.50052 5.51424 5.57632 5.60575 5.63857 5.75322 5.76288 5.79452 5.93949 5.97838 6.00334 6.03303 6.07626 6.10139 6.17479 6.23245 6.32405 6.37519 6.44602 6.51303 6.53493 6.64193 6.66191 6.69601 6.92880 6.96361 7.13325 7.28955 7.38145 7.77654 8.27303 8.40176 8.47636 9.17148 9.58494 10.12211 10.48081 11.49025 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003776 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.460991 B = 7413.562808 C = 8834.125258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.032 4.032 3 C -0.127 4.127 4 C -0.144 4.144 5 C 0.047 3.953 6 N -0.363 5.363 7 C -0.104 4.104 8 C 0.098 3.902 9 C -0.068 4.068 10 C 0.535 3.465 11 O -0.547 6.547 12 N -0.701 5.701 13 C 0.152 3.848 14 H 0.081 0.919 15 C -0.161 4.161 16 C -0.133 4.133 17 C 0.170 3.830 18 H 0.047 0.953 19 C -0.163 4.163 20 N -0.715 5.715 21 C -0.223 4.223 22 H 0.066 0.934 23 C -0.009 4.009 24 N -0.937 5.937 25 Si 0.897 3.103 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.290 1.290 29 N -0.446 5.446 30 C 0.215 3.785 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.403 0.597 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.052 0.948 48 H 0.044 0.956 49 H 0.378 0.622 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 10.212 8.007 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.034 4.034 3 C -0.150 4.150 4 C -0.166 4.166 5 C -0.075 4.075 6 N -0.035 5.035 7 C -0.235 4.235 8 C -0.036 4.036 9 C -0.109 4.109 10 C 0.321 3.679 11 O -0.425 6.425 12 N -0.354 5.354 13 C 0.047 3.953 14 H 0.099 0.901 15 C -0.219 4.219 16 C -0.171 4.171 17 C 0.060 3.940 18 H 0.065 0.935 19 C -0.224 4.224 20 N -0.358 5.358 21 C -0.354 4.354 22 H 0.084 0.916 23 C -0.204 4.204 24 N -0.587 5.587 25 Si 0.729 3.271 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.217 1.217 29 N -0.165 5.165 30 C -0.029 4.029 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.197 0.803 38 H 0.115 0.885 39 H 0.154 0.846 40 H 0.240 0.760 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.213 0.787 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.835 10.536 8.428 14.700 hybrid contribution 1.013 0.308 -1.293 1.671 sum 6.848 10.844 7.135 14.677 Atomic orbital electron populations 1.20679 0.89110 1.03497 1.03035 1.19043 0.96923 0.88492 0.98984 1.20805 0.93673 0.97601 1.02933 1.20658 0.94763 0.96863 1.04275 1.21489 0.98330 0.83558 1.04166 1.42766 1.08832 1.05790 1.46126 1.22311 1.00845 0.80608 1.19689 1.20316 0.87825 0.95501 0.99921 1.20105 1.01485 0.87761 1.01553 1.20002 0.80603 0.82286 0.85002 1.90644 1.49397 1.54887 1.47577 1.45901 1.52849 1.06906 1.29752 1.20727 0.93725 0.95527 0.85368 0.90127 1.22202 1.00148 1.01787 0.97807 1.22192 0.99934 0.95688 0.99306 1.20270 0.93254 0.93707 0.86792 0.93486 1.22427 1.00483 0.99621 0.99834 1.42429 1.08262 1.69989 1.15116 1.19150 0.92918 1.28733 0.94588 0.91626 1.24516 0.95807 1.01941 0.98093 1.69575 1.06735 1.53484 1.28865 0.86400 0.78635 0.79782 0.82294 1.21235 1.21907 1.21676 1.70738 1.29231 0.97156 1.19358 1.20879 0.80045 0.94592 1.07343 0.90533 0.91233 0.90023 0.84540 0.83714 0.82538 0.80273 0.88515 0.84573 0.75956 0.92402 0.92941 0.92586 0.91063 0.91830 0.94678 0.92926 0.93649 0.78700 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.03 36.01 0.36 -1.05 16 2 C -0.03 -0.47 5.90 -104.40 -0.62 -1.09 16 3 C -0.13 -1.41 9.72 -39.54 -0.38 -1.79 16 4 C -0.14 -1.41 9.99 -39.91 -0.40 -1.81 16 5 C 0.05 0.53 10.95 -16.65 -0.18 0.35 16 6 N -0.36 -5.67 2.94 -62.66 -0.18 -5.85 16 7 C -0.10 -1.66 11.63 -16.43 -0.19 -1.85 16 8 C 0.10 1.93 5.85 -82.97 -0.49 1.45 16 9 C -0.07 -1.31 6.26 -29.04 -0.18 -1.49 16 10 C 0.54 11.10 7.78 -10.99 -0.09 11.02 16 11 O -0.55 -13.03 15.22 5.55 0.08 -12.95 16 12 N -0.70 -12.94 3.80 -53.81 -0.20 -13.15 16 13 C 0.15 2.56 2.57 -67.93 -0.17 2.38 16 14 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 15 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 16 C -0.13 -2.06 4.43 -26.73 -0.12 -2.18 16 17 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 20 N -0.71 -16.33 3.84 -53.43 -0.21 -16.54 16 21 C -0.22 -5.91 9.93 -15.06 -0.15 -6.06 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.94 -25.35 12.83 55.49 0.71 -24.64 16 25 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 N -0.45 -9.66 10.66 -9.00 -0.10 -9.75 16 30 C 0.21 3.92 7.52 -156.04 -1.17 2.75 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 39 H 0.14 3.03 7.91 -51.93 -0.41 2.62 16 40 H 0.40 7.40 6.51 -40.82 -0.27 7.14 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.38 8.75 5.71 -40.82 -0.23 8.52 16 50 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -33.67 411.81 -10.10 -43.77 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -8.03 Total: 16.43 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.37 Total: -1.11 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: 0.02 Total: -69.93 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.67 -10.10 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135678046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.856 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds