Wall clock time and date at job start Wed Apr 1 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36012 * 120.34164 * 2 1 4 4 C 1.40476 * 119.69919 * 180.02562 * 3 2 1 5 5 C 1.34950 * 120.29556 * 0.02562 * 4 3 2 6 6 N 1.36492 * 120.61343 * 359.97438 * 5 4 3 7 7 C 1.36832 * 132.56948 * 180.31274 * 6 5 4 8 8 C 1.35107 * 107.17801 * 180.10773 * 7 6 5 9 9 C 1.50697 * 125.68828 * 179.88177 * 8 7 6 10 10 C 1.50698 * 109.47331 * 124.71033 * 9 8 7 11 11 O 1.21284 * 120.00180 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99979 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47123 * 35.00778 * 13 12 10 15 15 C 1.53002 * 109.47520 * 275.00457 * 13 12 10 16 16 C 1.53003 * 109.47333 * 155.00547 * 13 12 10 17 17 C 1.53004 * 109.46807 * 295.00361 * 16 13 12 18 18 H 1.08995 * 109.47216 * 304.99653 * 17 16 13 19 19 C 1.52999 * 109.47083 * 184.99648 * 17 16 13 20 20 N 1.46498 * 109.47065 * 64.99542 * 17 16 13 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 17 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 17 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 17 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 N 1.33520 * 108.62529 * 359.60882 * 8 7 6 30 30 C 1.32567 * 109.15588 * 0.24799 * 29 8 7 31 31 H 1.09002 * 109.46782 * 269.93514 * 1 2 3 32 32 H 1.08999 * 109.46546 * 29.93509 * 1 2 3 33 33 H 1.08998 * 109.47103 * 149.94109 * 1 2 3 34 34 H 1.08004 * 120.15225 * 0.04647 * 3 2 1 35 35 H 1.07996 * 119.85177 * 180.02562 * 4 3 2 36 36 H 1.08002 * 119.69310 * 180.02562 * 5 4 3 37 37 H 1.07996 * 126.41277 * 359.95812 * 7 6 5 38 38 H 1.08998 * 109.47375 * 4.70784 * 9 8 7 39 39 H 1.09004 * 109.46545 * 244.70982 * 9 8 7 40 40 H 0.96999 * 119.99718 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47436 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.47185 * 300.00284 * 15 13 12 43 43 H 1.09004 * 109.46882 * 60.00056 * 15 13 12 44 44 H 1.08993 * 109.47316 * 175.00453 * 16 13 12 45 45 H 1.08998 * 109.46869 * 54.99922 * 16 13 12 46 46 H 1.09003 * 109.47054 * 59.99725 * 19 17 16 47 47 H 1.08996 * 109.47245 * 179.97438 * 19 17 16 48 48 H 1.08995 * 109.47098 * 300.00077 * 19 17 16 49 49 H 0.97001 * 120.00384 * 25.00562 * 20 17 16 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1738 0.0000 4 6 3.5987 1.1581 -0.0005 5 6 4.2664 -0.0147 -0.0016 6 7 3.5895 -1.1999 -0.0016 7 6 4.0054 -2.5035 0.0030 8 6 2.8970 -3.2760 -0.0021 9 6 2.8756 -4.7828 -0.0022 10 6 2.0542 -5.2737 1.1620 11 8 1.5366 -4.4782 1.9172 12 7 1.8938 -6.5967 1.3633 13 6 1.0958 -7.0738 2.4954 14 1 0.2655 -6.3892 2.6688 15 6 1.9735 -7.1385 3.7470 16 6 0.5499 -8.4685 2.1827 17 6 -0.4257 -8.3826 1.0073 18 1 -1.2027 -7.6523 1.2327 19 6 -1.0656 -9.7527 0.7744 20 7 0.2973 -7.9700 -0.1983 21 6 -0.3709 -7.3448 -1.2170 22 1 -1.4300 -7.1519 -1.1298 23 6 0.3130 -6.9590 -2.3617 24 7 1.6036 -7.1946 -2.4681 25 14 -0.5983 -6.1055 -3.7511 26 1 -1.1970 -4.8430 -3.2484 27 1 0.3509 -5.7999 -4.8515 28 1 -1.6733 -6.9956 -4.2583 29 7 1.8237 -2.4818 -0.0010 30 6 2.2188 -1.2164 -0.0007 31 1 -0.3633 -0.0012 1.0277 32 1 -0.3632 0.8906 -0.5128 33 1 -0.3633 -0.8894 -0.5147 34 1 1.6621 2.1138 0.0008 35 1 4.1468 2.0887 -0.0001 36 1 5.3464 -0.0154 -0.0016 37 1 5.0282 -2.8500 0.0072 38 1 3.8941 -5.1607 0.0868 39 1 2.4357 -5.1398 -0.9335 40 1 2.3075 -7.2328 0.7591 41 1 1.3798 -7.4940 4.5891 42 1 2.8038 -7.8231 3.5735 43 1 2.3623 -6.1449 3.9698 44 1 0.0311 -8.8602 3.0576 45 1 1.3750 -9.1316 1.9224 46 1 -1.6035 -10.0597 1.6714 47 1 -1.7610 -9.6914 -0.0627 48 1 -0.2886 -10.4830 0.5490 49 1 1.2485 -8.1434 -0.2766 50 1 2.0815 -6.9247 -3.2679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135678046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:14 Heat of formation + Delta-G solvation = 39.864912 kcal Electronic energy + Delta-G solvation = -31013.797464 eV Core-core repulsion = 27041.709497 eV Total energy + Delta-G solvation = -3972.087967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.71920 -40.64887 -38.63967 -38.06018 -35.74095 -35.41956 -34.03167 -33.08478 -31.91039 -31.07392 -30.18834 -28.53742 -27.86679 -27.55992 -25.56114 -23.80909 -23.45605 -22.56453 -21.65863 -21.53207 -20.71582 -19.09802 -18.51108 -17.98850 -17.60031 -17.14781 -16.76238 -16.65521 -16.28662 -15.96547 -15.55261 -15.40982 -15.09002 -15.01875 -14.53911 -14.34929 -14.30106 -14.20033 -13.82587 -13.61285 -13.50266 -13.37271 -13.27304 -12.95740 -12.89198 -12.77817 -12.71715 -12.60211 -12.54882 -12.38428 -12.24626 -12.17713 -11.69461 -11.58967 -11.52565 -11.39092 -10.92560 -10.86204 -10.58498 -9.73206 -9.55444 -8.79725 -8.68919 -7.85713 -5.06057 -0.12875 0.38127 1.41338 1.45646 1.49170 1.72022 1.88412 1.97511 2.54528 2.59662 2.70727 3.28950 3.48536 3.50724 3.81052 3.84653 3.99044 4.02193 4.05770 4.19832 4.24280 4.33233 4.35956 4.41599 4.45413 4.59251 4.66453 4.70085 4.72184 4.77644 4.84437 4.88820 4.93452 4.95037 4.99000 5.08754 5.10586 5.15595 5.17737 5.18378 5.37567 5.38622 5.44019 5.60159 5.65238 5.66711 5.70765 5.90045 6.24604 6.38274 6.85709 7.05517 7.47573 7.59433 8.19839 8.47835 9.35568 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003776 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.460991 B = 7413.562808 C = 8834.125258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.083 4.083 3 C -0.095 4.095 4 C -0.135 4.135 5 C 0.035 3.965 6 N -0.367 5.367 7 C -0.095 4.095 8 C 0.053 3.947 9 C -0.059 4.059 10 C 0.528 3.472 11 O -0.585 6.585 12 N -0.693 5.693 13 C 0.147 3.853 14 H 0.045 0.955 15 C -0.148 4.148 16 C -0.118 4.118 17 C 0.162 3.838 18 H 0.022 0.978 19 C -0.153 4.153 20 N -0.717 5.717 21 C -0.225 4.225 22 H 0.051 0.949 23 C -0.046 4.046 24 N -0.941 5.941 25 Si 0.935 3.065 26 H -0.304 1.304 27 H -0.293 1.293 28 H -0.283 1.283 29 N -0.518 5.518 30 C 0.193 3.807 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.176 0.824 35 H 0.196 0.804 36 H 0.199 0.801 37 H 0.220 0.780 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.404 0.596 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.027 0.973 48 H 0.050 0.950 49 H 0.377 0.623 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 11.494 9.182 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.156 4.156 5 C -0.085 4.085 6 N -0.038 5.038 7 C -0.226 4.226 8 C -0.080 4.080 9 C -0.099 4.099 10 C 0.315 3.685 11 O -0.466 6.466 12 N -0.345 5.345 13 C 0.043 3.957 14 H 0.063 0.937 15 C -0.206 4.206 16 C -0.156 4.156 17 C 0.053 3.947 18 H 0.040 0.960 19 C -0.213 4.213 20 N -0.360 5.360 21 C -0.358 4.358 22 H 0.069 0.931 23 C -0.240 4.240 24 N -0.592 5.592 25 Si 0.768 3.232 26 H -0.232 1.232 27 H -0.219 1.219 28 H -0.210 1.210 29 N -0.238 5.238 30 C -0.051 4.051 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.193 0.807 35 H 0.213 0.787 36 H 0.216 0.784 37 H 0.236 0.764 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.242 0.758 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.212 0.788 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.136 11.772 9.617 17.241 hybrid contribution 0.279 0.093 -1.612 1.638 sum 8.415 11.865 8.005 16.603 Atomic orbital electron populations 1.20600 0.89210 1.03054 1.02710 1.19361 0.97428 0.88810 1.03000 1.21391 0.94753 0.97528 0.98156 1.21345 0.94276 0.98293 1.01642 1.22441 1.00472 0.82427 1.03202 1.42989 1.08196 1.06923 1.45704 1.22733 1.01369 0.80556 1.17955 1.20507 0.89052 0.95644 1.02755 1.19988 1.02625 0.88557 0.98761 1.20376 0.80427 0.82651 0.85069 1.90608 1.50969 1.55919 1.49097 1.45938 1.52346 1.06221 1.30037 1.20863 0.93241 0.95446 0.86189 0.93655 1.22075 1.00455 1.01242 0.96872 1.22107 0.99653 0.94996 0.98845 1.20481 0.93525 0.93913 0.86756 0.95975 1.22264 1.00227 0.98276 1.00494 1.42452 1.08237 1.69786 1.15540 1.19225 0.92495 1.28502 0.95568 0.93089 1.24890 0.96530 1.03118 0.99449 1.69623 1.06815 1.53993 1.28739 0.85795 0.78002 0.78412 0.80975 1.23189 1.21942 1.20985 1.70579 1.31423 0.99373 1.22443 1.21339 0.81790 0.94586 1.07401 0.90917 0.87808 0.94160 0.80673 0.78666 0.78393 0.76357 0.85135 0.88274 0.75808 0.89863 0.90925 0.94670 0.87534 0.90165 0.91281 0.95357 0.93053 0.78837 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 10.03 71.24 0.71 -2.06 16 2 C -0.08 -2.48 5.90 -19.72 -0.12 -2.60 16 3 C -0.09 -1.81 9.72 22.30 0.22 -1.59 16 4 C -0.14 -2.00 9.99 22.06 0.22 -1.78 16 5 C 0.04 0.68 10.95 83.21 0.91 1.59 16 6 N -0.37 -11.22 2.94 -352.15 -1.04 -12.25 16 7 C -0.10 -3.05 11.63 83.19 0.97 -2.09 16 8 C 0.05 2.22 5.85 41.58 0.24 2.46 16 9 C -0.06 -2.40 6.26 29.10 0.18 -2.22 16 10 C 0.53 23.31 7.78 87.66 0.68 23.99 16 11 O -0.59 -29.99 15.22 -3.04 -0.05 -30.04 16 12 N -0.69 -26.50 3.80 -442.53 -1.68 -28.18 16 13 C 0.15 4.99 2.57 44.99 0.12 5.10 16 14 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 15 C -0.15 -3.99 9.48 71.98 0.68 -3.31 16 16 C -0.12 -3.45 4.43 30.60 0.14 -3.32 16 17 C 0.16 6.19 2.89 44.99 0.13 6.32 16 18 H 0.02 0.96 8.08 -2.39 -0.02 0.94 16 19 C -0.15 -5.17 9.49 71.98 0.68 -4.49 16 20 N -0.72 -33.59 3.84 -322.94 -1.24 -34.83 16 21 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 22 H 0.05 2.92 7.83 -2.91 -0.02 2.89 16 23 C -0.05 -2.58 5.50 84.86 0.47 -2.12 16 24 N -0.94 -52.44 12.83 21.65 0.28 -52.16 16 25 Si 0.94 48.31 29.55 68.60 2.03 50.34 16 26 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 27 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 28 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 29 N -0.52 -24.33 10.66 -182.40 -1.94 -26.28 16 30 C 0.19 7.35 7.52 134.11 1.01 8.36 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 33 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.22 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.13 4.13 8.10 -2.39 -0.02 4.11 16 39 H 0.10 4.78 7.91 -2.38 -0.02 4.77 16 40 H 0.40 15.18 6.51 -92.71 -0.60 14.57 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.38 17.73 5.71 -92.71 -0.53 17.20 16 50 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -82.63 411.81 4.24 -78.39 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.19 Total: 44.38 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 8.08 Total: 10.63 kcal Atomic # 7 Polarization: -148.08 SS G_CDS: -5.63 Total: -153.71 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -82.63 4.24 -78.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135678046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.254 kcal (2) G-P(sol) polarization free energy of solvation -82.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds