Wall clock time and date at job start Wed Apr 1 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48508 * 109.47164 * 269.99677 * 3 2 1 5 5 H 1.48504 * 109.47530 * 30.00059 * 3 2 1 6 6 H 1.48509 * 109.46857 * 149.99992 * 3 2 1 7 7 C 1.38811 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00035 * 164.51968 * 7 2 1 9 9 N 1.36937 * 119.99908 * 344.51226 * 7 2 1 10 10 C 1.47003 * 121.37482 * 335.97453 * 9 7 2 11 11 C 1.50319 * 109.16463 * 222.96767 * 10 9 7 12 12 C 1.29450 * 123.65714 * 349.02626 * 11 10 9 13 13 C 1.50699 * 117.69883 * 180.85624 * 12 11 10 14 14 C 1.53009 * 109.47135 * 95.00002 * 13 12 11 15 15 N 1.46498 * 109.47071 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99761 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00299 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.74988 * 299.36143 * 18 16 15 20 20 C 1.53433 * 109.72722 * 178.72076 * 18 16 15 21 21 C 1.53152 * 109.18818 * 191.75833 * 20 18 16 22 22 C 1.53244 * 109.55663 * 69.43929 * 21 20 18 23 23 N 1.46593 * 108.80052 * 309.43769 * 22 21 20 24 24 N 1.39655 * 127.55169 * 197.29850 * 23 22 21 25 25 C 1.31022 * 108.13152 * 179.89238 * 24 23 22 26 26 C 1.40062 * 108.25283 * 0.03560 * 25 24 23 27 27 C 1.34748 * 107.79849 * 0.02562 * 26 25 24 28 28 C 1.49973 * 124.60848 * 1.13549 * 12 11 10 29 29 C 1.47338 * 121.37339 * 156.00328 * 9 7 2 30 30 H 0.96994 * 120.00025 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51549 * 103.06662 * 10 9 7 32 32 H 1.09000 * 109.57484 * 342.91301 * 10 9 7 33 33 H 1.08009 * 118.17271 * 169.04848 * 11 10 9 34 34 H 1.08994 * 109.46827 * 335.00468 * 13 12 11 35 35 H 1.08998 * 109.47412 * 214.99635 * 13 12 11 36 36 H 1.09003 * 109.46786 * 59.99902 * 14 13 12 37 37 H 1.08994 * 109.46775 * 300.00590 * 14 13 12 38 38 H 0.96997 * 120.00202 * 0.02562 * 15 14 13 39 39 H 1.09005 * 109.51799 * 311.67017 * 20 18 16 40 40 H 1.08994 * 109.52050 * 71.84419 * 20 18 16 41 41 H 1.09000 * 109.45813 * 189.45960 * 21 20 18 42 42 H 1.08997 * 109.45517 * 309.41342 * 21 20 18 43 43 H 1.09002 * 109.58707 * 69.23079 * 22 21 20 44 44 H 1.09000 * 109.58538 * 189.50551 * 22 21 20 45 45 H 1.07995 * 125.87566 * 180.02562 * 25 24 23 46 46 H 1.07995 * 126.10090 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.31062 * 101.00890 * 28 12 11 48 48 H 1.08996 * 109.31988 * 220.43727 * 28 12 11 49 49 H 1.09004 * 109.77693 * 237.79078 * 29 9 7 50 50 H 1.09003 * 109.77762 * 358.53752 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0609 -1.2190 -0.2502 9 7 1.3629 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1381 11 6 0.2247 -3.4838 2.1399 12 6 1.1204 -4.4177 2.1026 13 6 1.0640 -5.4852 3.1648 14 6 0.2872 -6.6920 2.6342 15 7 0.2318 -7.7295 3.6670 16 6 -0.4061 -8.8911 3.4217 17 8 -0.9348 -9.0773 2.3461 18 6 -0.4637 -9.9582 4.4842 19 1 0.5466 -10.2758 4.7423 20 6 -1.2683 -11.1589 3.9693 21 6 -1.5706 -12.1009 5.1383 22 6 -2.5758 -11.4369 6.0855 23 7 -2.0978 -10.0904 6.4130 24 7 -2.5064 -9.2763 7.4717 25 6 -1.8319 -8.1549 7.4075 26 6 -0.9730 -8.2221 6.3032 27 6 -1.1568 -9.4183 5.7107 28 6 2.2139 -4.5088 1.0803 29 6 1.8591 -3.6720 -0.1540 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7264 -2.5115 0.4989 32 1 0.0574 -1.4136 1.6611 33 1 -0.5059 -3.5095 2.9349 34 1 0.5636 -5.0914 4.0493 35 1 2.0768 -5.7916 3.4262 36 1 0.7875 -7.0858 1.7495 37 1 -0.7256 -6.3857 2.3727 38 1 0.6542 -7.5805 4.5274 39 1 -2.2036 -10.8099 3.5316 40 1 -0.6878 -11.6896 3.2147 41 1 -1.9917 -13.0307 4.7559 42 1 -0.6490 -12.3155 5.6794 43 1 -3.5485 -11.3708 5.5980 44 1 -2.6637 -12.0275 6.9974 45 1 -1.9227 -7.3218 8.0887 46 1 -0.2860 -7.4526 5.9836 47 1 3.1442 -4.1418 1.5139 48 1 2.3439 -5.5494 0.7830 49 1 1.0848 -4.1738 -0.7344 50 1 2.7471 -3.5292 -0.7698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160523272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:49 Heat of formation + Delta-G solvation = 73.811290 kcal Electronic energy + Delta-G solvation = -29685.022674 eV Core-core repulsion = 25714.406733 eV Total energy + Delta-G solvation = -3970.615942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05180 -39.83774 -37.93752 -36.78976 -35.43922 -33.77932 -32.98536 -31.34612 -30.70428 -29.81723 -28.84192 -28.52195 -25.86753 -24.79463 -23.06598 -22.68849 -22.45379 -21.48899 -21.11016 -20.72691 -19.36735 -17.70865 -17.53323 -17.09759 -16.34969 -15.90761 -15.57423 -15.54095 -15.08289 -14.89168 -14.72044 -14.43620 -14.25351 -13.94352 -13.81934 -13.67323 -13.46189 -13.27137 -12.86236 -12.63288 -12.48821 -12.19337 -12.00824 -11.88462 -11.61424 -11.56453 -11.52203 -11.40324 -11.01078 -10.99248 -10.89407 -10.70469 -10.36055 -10.29247 -10.13153 -9.79664 -9.56040 -9.48382 -9.18192 -8.88135 -8.63658 -7.90555 -6.70389 -5.76831 -3.15403 1.45604 2.04671 2.41043 2.51914 2.80780 3.11408 3.39009 3.45696 3.47951 3.89864 3.96130 4.07484 4.20539 4.51368 4.54040 4.68190 4.68750 4.73775 5.00960 5.11168 5.11991 5.14562 5.21699 5.26399 5.31176 5.35994 5.41799 5.48739 5.57372 5.65657 5.70021 5.72195 5.80369 6.01883 6.05379 6.15880 6.22333 6.30127 6.33193 6.40873 6.57588 6.58976 6.80609 6.92491 7.25087 7.27228 7.35722 7.38778 7.43233 7.76948 7.90477 7.98491 8.41281 9.22677 9.85672 10.44346 11.33584 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.001952 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.931736 B =14341.939604 C =15022.103229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.092 4.092 14 C 0.123 3.877 15 N -0.723 5.723 16 C 0.525 3.475 17 O -0.531 6.531 18 C -0.047 4.047 19 H 0.120 0.880 20 C -0.109 4.109 21 C -0.136 4.136 22 C 0.130 3.870 23 N -0.364 5.364 24 N -0.291 5.291 25 C 0.049 3.951 26 C -0.264 4.264 27 C 0.088 3.912 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.254 0.746 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.186 0.814 46 H 0.148 0.852 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.024 0.976 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -24.780 14.386 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.000 4.000 15 N -0.376 5.376 16 C 0.309 3.691 17 O -0.407 6.407 18 C -0.070 4.070 19 H 0.138 0.862 20 C -0.147 4.147 21 C -0.174 4.174 22 C 0.009 3.991 23 N -0.148 5.148 24 N -0.112 5.112 25 C -0.137 4.137 26 C -0.294 4.294 27 C -0.040 4.040 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.203 0.797 46 H 0.166 0.834 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.563 -25.541 14.214 29.341 hybrid contribution 1.156 1.528 0.169 1.924 sum -1.407 -24.013 14.383 28.026 Atomic orbital electron populations 1.70016 1.05164 1.25444 1.54844 1.24992 0.95391 0.98271 1.01382 0.86269 0.79037 0.83653 0.77658 1.21466 1.21589 1.20576 1.19166 0.92178 0.84386 1.41671 0.91445 1.44134 1.29281 1.01155 1.57329 1.19700 0.88615 0.94771 0.89774 1.23126 0.96665 0.97346 0.99388 1.20212 0.99336 0.96583 0.98236 1.20912 0.99957 0.94126 0.97953 1.21484 1.01359 0.86695 0.90430 1.46256 1.56392 1.16408 1.18560 1.20008 0.78355 0.82657 0.88029 1.90743 1.45256 1.79334 1.25359 1.20188 1.01160 0.95416 0.90210 0.86224 1.21543 1.01754 0.93897 0.97513 1.21994 0.99759 0.99394 0.96245 1.21855 0.98470 0.78537 1.00269 1.48686 1.30581 1.14194 1.21303 1.77322 1.23072 1.03578 1.07229 1.23951 0.94948 0.96466 0.98290 1.21134 1.08734 0.98601 1.00904 1.20489 0.94344 0.93882 0.95263 1.20788 0.96561 0.98961 0.96666 1.20989 0.97303 0.87242 0.92841 0.93643 0.94452 0.89154 0.89048 0.91447 0.91443 0.91130 0.91181 0.76419 0.89841 0.89349 0.88365 0.90428 0.89664 0.88781 0.79682 0.83417 0.91924 0.92944 0.95831 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.48 11.08 55.49 0.61 -25.86 16 2 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 3 Si 0.90 21.79 29.58 -169.99 -5.03 16.77 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.75 9.71 -15.06 -0.15 -6.90 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -15.12 3.01 -173.57 -0.52 -15.64 16 10 C 0.20 4.74 5.23 -5.10 -0.03 4.72 16 11 C -0.15 -2.80 9.47 -35.78 -0.34 -3.14 16 12 C -0.14 -2.42 5.11 -100.99 -0.52 -2.93 16 13 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 14 C 0.12 1.53 5.66 -4.04 -0.02 1.51 16 15 N -0.72 -7.24 4.97 -60.29 -0.30 -7.54 16 16 C 0.53 5.88 7.09 -10.99 -0.08 5.80 16 17 O -0.53 -8.05 15.82 5.55 0.09 -7.97 16 18 C -0.05 -0.37 2.92 -92.62 -0.27 -0.64 16 19 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 20 C -0.11 -0.75 4.75 -26.43 -0.13 -0.88 16 21 C -0.14 -0.60 5.93 -26.53 -0.16 -0.75 16 22 C 0.13 0.81 7.28 -3.87 -0.03 0.78 16 23 N -0.36 -3.52 4.04 -56.95 -0.23 -3.75 16 24 N -0.29 -3.29 12.62 30.69 0.39 -2.90 16 25 C 0.05 0.47 12.03 -17.21 -0.21 0.27 16 26 C -0.26 -2.44 9.80 -40.13 -0.39 -2.83 16 27 C 0.09 0.82 6.11 -82.22 -0.50 0.32 16 28 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 29 C 0.14 3.01 6.59 -3.44 -0.02 2.99 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 33 H 0.09 1.56 7.73 -52.48 -0.41 1.16 16 34 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 35 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 2.98 6.08 -40.82 -0.25 2.73 16 39 H 0.08 0.75 7.72 -51.93 -0.40 0.35 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.15 1.10 5.87 -52.49 -0.31 0.79 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.42 395.90 -10.24 -44.66 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.97 Total: 1.17 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.24 Total: -4.90 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.05 Total: -55.69 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.42 -10.24 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160523272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.468 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds