Wall clock time and date at job start Wed Apr 1 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48508 * 109.47164 * 269.99677 * 3 2 1 5 5 H 1.48504 * 109.47530 * 30.00059 * 3 2 1 6 6 H 1.48509 * 109.46857 * 149.99992 * 3 2 1 7 7 C 1.38811 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00035 * 164.51968 * 7 2 1 9 9 N 1.36937 * 119.99908 * 344.51226 * 7 2 1 10 10 C 1.47003 * 121.37482 * 335.97453 * 9 7 2 11 11 C 1.50319 * 109.16463 * 222.96767 * 10 9 7 12 12 C 1.29450 * 123.65714 * 349.02626 * 11 10 9 13 13 C 1.50699 * 117.69883 * 180.85624 * 12 11 10 14 14 C 1.53009 * 109.47135 * 95.00002 * 13 12 11 15 15 N 1.46498 * 109.47071 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99761 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00299 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.74988 * 299.36143 * 18 16 15 20 20 C 1.53433 * 109.72722 * 178.72076 * 18 16 15 21 21 C 1.53152 * 109.18818 * 191.75833 * 20 18 16 22 22 C 1.53244 * 109.55663 * 69.43929 * 21 20 18 23 23 N 1.46593 * 108.80052 * 309.43769 * 22 21 20 24 24 N 1.39655 * 127.55169 * 197.29850 * 23 22 21 25 25 C 1.31022 * 108.13152 * 179.89238 * 24 23 22 26 26 C 1.40062 * 108.25283 * 0.03560 * 25 24 23 27 27 C 1.34748 * 107.79849 * 0.02562 * 26 25 24 28 28 C 1.49973 * 124.60848 * 1.13549 * 12 11 10 29 29 C 1.47338 * 121.37339 * 156.00328 * 9 7 2 30 30 H 0.96994 * 120.00025 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51549 * 103.06662 * 10 9 7 32 32 H 1.09000 * 109.57484 * 342.91301 * 10 9 7 33 33 H 1.08009 * 118.17271 * 169.04848 * 11 10 9 34 34 H 1.08994 * 109.46827 * 335.00468 * 13 12 11 35 35 H 1.08998 * 109.47412 * 214.99635 * 13 12 11 36 36 H 1.09003 * 109.46786 * 59.99902 * 14 13 12 37 37 H 1.08994 * 109.46775 * 300.00590 * 14 13 12 38 38 H 0.96997 * 120.00202 * 0.02562 * 15 14 13 39 39 H 1.09005 * 109.51799 * 311.67017 * 20 18 16 40 40 H 1.08994 * 109.52050 * 71.84419 * 20 18 16 41 41 H 1.09000 * 109.45813 * 189.45960 * 21 20 18 42 42 H 1.08997 * 109.45517 * 309.41342 * 21 20 18 43 43 H 1.09002 * 109.58707 * 69.23079 * 22 21 20 44 44 H 1.09000 * 109.58538 * 189.50551 * 22 21 20 45 45 H 1.07995 * 125.87566 * 180.02562 * 25 24 23 46 46 H 1.07995 * 126.10090 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.31062 * 101.00890 * 28 12 11 48 48 H 1.08996 * 109.31988 * 220.43727 * 28 12 11 49 49 H 1.09004 * 109.77693 * 237.79078 * 29 9 7 50 50 H 1.09003 * 109.77762 * 358.53752 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0609 -1.2190 -0.2502 9 7 1.3629 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1381 11 6 0.2247 -3.4838 2.1399 12 6 1.1204 -4.4177 2.1026 13 6 1.0640 -5.4852 3.1648 14 6 0.2872 -6.6920 2.6342 15 7 0.2318 -7.7295 3.6670 16 6 -0.4061 -8.8911 3.4217 17 8 -0.9348 -9.0773 2.3461 18 6 -0.4637 -9.9582 4.4842 19 1 0.5466 -10.2758 4.7423 20 6 -1.2683 -11.1589 3.9693 21 6 -1.5706 -12.1009 5.1383 22 6 -2.5758 -11.4369 6.0855 23 7 -2.0978 -10.0904 6.4130 24 7 -2.5064 -9.2763 7.4717 25 6 -1.8319 -8.1549 7.4075 26 6 -0.9730 -8.2221 6.3032 27 6 -1.1568 -9.4183 5.7107 28 6 2.2139 -4.5088 1.0803 29 6 1.8591 -3.6720 -0.1540 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7264 -2.5115 0.4989 32 1 0.0574 -1.4136 1.6611 33 1 -0.5059 -3.5095 2.9349 34 1 0.5636 -5.0914 4.0493 35 1 2.0768 -5.7916 3.4262 36 1 0.7875 -7.0858 1.7495 37 1 -0.7256 -6.3857 2.3727 38 1 0.6542 -7.5805 4.5274 39 1 -2.2036 -10.8099 3.5316 40 1 -0.6878 -11.6896 3.2147 41 1 -1.9917 -13.0307 4.7559 42 1 -0.6490 -12.3155 5.6794 43 1 -3.5485 -11.3708 5.5980 44 1 -2.6637 -12.0275 6.9974 45 1 -1.9227 -7.3218 8.0887 46 1 -0.2860 -7.4526 5.9836 47 1 3.1442 -4.1418 1.5139 48 1 2.3439 -5.5494 0.7830 49 1 1.0848 -4.1738 -0.7344 50 1 2.7471 -3.5292 -0.7698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160523272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:48 Heat of formation + Delta-G solvation = 52.163737 kcal Electronic energy + Delta-G solvation = -29685.961383 eV Core-core repulsion = 25714.406733 eV Total energy + Delta-G solvation = -3971.554650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.71203 -40.72837 -39.46177 -37.42660 -36.64373 -35.19211 -33.87452 -32.99039 -31.49401 -31.31432 -30.13222 -29.28297 -27.27695 -25.85416 -24.58702 -23.90430 -23.22077 -22.55224 -22.09040 -21.80443 -19.95264 -19.45142 -18.44648 -17.76315 -17.59801 -17.04578 -16.89593 -16.53834 -16.29020 -15.78222 -15.65893 -15.45411 -15.27871 -15.19878 -15.04901 -14.82289 -14.56842 -14.29925 -14.18184 -13.83295 -13.41913 -13.34440 -13.18157 -13.08605 -12.82022 -12.78184 -12.56745 -12.43242 -12.32845 -12.17842 -12.08932 -12.02515 -11.87948 -11.68242 -11.63620 -11.27358 -11.02609 -10.67607 -10.20620 -10.11477 -9.55740 -9.46565 -8.74375 -7.87548 -5.29620 0.77498 1.38544 1.43876 1.46792 1.48067 1.57965 1.67831 1.81845 2.20512 2.51491 3.29204 3.34658 3.38357 3.53437 3.66486 3.70631 3.95666 3.98989 4.09460 4.13691 4.18547 4.22174 4.26970 4.32306 4.54063 4.57436 4.61045 4.63966 4.70063 4.71198 4.76878 4.88573 4.90997 4.93407 4.98615 5.00298 5.07361 5.12196 5.19672 5.21842 5.25588 5.40307 5.43642 5.51668 5.61450 5.68405 5.90289 5.99791 6.30333 6.34308 6.48622 6.71110 7.13647 7.16867 7.84055 8.38884 9.21095 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.001952 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.931736 B =14341.939604 C =15022.103229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.207 3.793 11 C -0.176 4.176 12 C -0.118 4.118 13 C -0.079 4.079 14 C 0.132 3.868 15 N -0.710 5.710 16 C 0.523 3.477 17 O -0.576 6.576 18 C -0.038 4.038 19 H 0.153 0.847 20 C -0.110 4.110 21 C -0.123 4.123 22 C 0.118 3.882 23 N -0.370 5.370 24 N -0.327 5.327 25 C 0.040 3.960 26 C -0.275 4.275 27 C 0.082 3.918 28 C -0.087 4.087 29 C 0.134 3.866 30 H 0.249 0.751 31 H 0.000 1.000 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.415 0.585 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.206 0.794 46 H 0.164 0.836 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.017 0.983 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -26.976 16.080 31.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.082 3.918 11 C -0.196 4.196 12 C -0.119 4.119 13 C -0.117 4.117 14 C 0.008 3.992 15 N -0.363 5.363 16 C 0.309 3.691 17 O -0.455 6.455 18 C -0.061 4.061 19 H 0.170 0.830 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.002 4.002 23 N -0.154 5.154 24 N -0.149 5.149 25 C -0.145 4.145 26 C -0.305 4.305 27 C -0.047 4.047 28 C -0.125 4.125 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.223 0.777 46 H 0.181 0.819 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.035 0.965 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.308 -27.769 15.944 32.022 hybrid contribution 0.469 2.134 -0.429 2.227 sum 0.161 -25.635 15.515 29.964 Atomic orbital electron populations 1.70200 1.06680 1.25761 1.56273 1.25815 0.96194 1.01576 1.01745 0.85215 0.77998 0.79327 0.77546 1.21177 1.21950 1.19347 1.19536 0.92577 0.85566 1.40950 0.91039 1.44435 1.29432 1.02137 1.57962 1.19334 0.87214 0.95290 0.89983 1.22812 0.99561 0.97257 0.99922 1.20581 0.97021 0.96174 0.98133 1.20819 1.01902 0.92351 0.96628 1.21191 0.99851 0.87220 0.90933 1.46084 1.56036 1.15545 1.18677 1.20572 0.77301 0.83186 0.88070 1.90730 1.47057 1.80229 1.27459 1.20235 1.02955 0.94393 0.88475 0.83013 1.21557 1.00487 0.94069 0.98664 1.21977 0.99958 0.99336 0.94806 1.22167 0.99040 0.77618 1.01340 1.48987 1.30466 1.15019 1.20945 1.77263 1.24314 1.04613 1.08673 1.24405 0.94605 0.96653 0.98812 1.21416 1.09120 0.99069 1.00853 1.20738 0.94317 0.94121 0.95489 1.20749 0.96784 1.00079 0.94898 1.21201 0.97017 0.86040 0.94832 0.94188 0.98234 0.92747 0.87043 0.89814 0.88546 0.91837 0.93609 0.74569 0.92476 0.88465 0.85882 0.89107 0.89897 0.87524 0.77691 0.81867 0.91171 0.89442 0.96524 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 11.08 21.65 0.24 -56.96 16 2 C -0.06 -3.36 5.01 84.86 0.43 -2.94 16 3 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.26 -14.40 9.71 84.03 0.82 -13.58 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.62 -31.95 3.01 -703.04 -2.11 -34.07 16 10 C 0.21 10.48 5.23 85.42 0.45 10.92 16 11 C -0.18 -6.77 9.47 27.11 0.26 -6.52 16 12 C -0.12 -3.75 5.11 -15.13 -0.08 -3.83 16 13 C -0.08 -1.68 5.32 29.85 0.16 -1.52 16 14 C 0.13 2.95 5.66 86.38 0.49 3.44 16 15 N -0.71 -12.20 4.97 -463.06 -2.30 -14.50 16 16 C 0.52 10.73 7.09 87.66 0.62 11.35 16 17 O -0.58 -17.11 15.82 -3.04 -0.05 -17.16 16 18 C -0.04 -0.51 2.92 -12.09 -0.04 -0.55 16 19 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 20 C -0.11 -1.30 4.75 30.79 0.15 -1.16 16 21 C -0.12 -0.75 5.93 30.73 0.18 -0.56 16 22 C 0.12 1.29 7.28 86.44 0.63 1.91 16 23 N -0.37 -6.65 4.04 -334.08 -1.35 -8.00 16 24 N -0.33 -7.10 12.62 -56.80 -0.72 -7.82 16 25 C 0.04 0.72 12.03 85.26 1.03 1.74 16 26 C -0.28 -4.49 9.80 21.91 0.21 -4.28 16 27 C 0.08 1.36 6.11 41.28 0.25 1.61 16 28 C -0.09 -2.80 5.95 29.72 0.18 -2.62 16 29 C 0.13 5.63 6.59 86.31 0.57 6.20 16 30 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.05 3.08 6.41 -2.39 -0.02 3.07 16 33 H 0.11 3.77 7.73 -2.91 -0.02 3.74 16 34 H 0.08 1.59 7.78 -2.39 -0.02 1.57 16 35 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16 36 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.42 4.59 6.08 -92.71 -0.56 4.02 16 39 H 0.06 1.00 7.72 -2.38 -0.02 0.98 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.09 0.37 8.12 -2.39 -0.02 0.35 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.16 1.94 5.87 -2.91 -0.02 1.92 16 47 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 50 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -78.90 395.90 2.41 -76.49 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.38 Total: 14.78 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.30 Total: -0.37 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -6.24 Total: -121.35 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.90 2.41 -76.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160523272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.652 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds