Wall clock time and date at job start Wed Apr 1 2020 03:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40168 * 120.20057 * 2 1 4 4 C 1.35265 * 120.13065 * 180.02562 * 3 2 1 5 5 N 1.35955 * 120.63060 * 359.97438 * 4 3 2 6 6 C 1.36577 * 120.67427 * 0.02562 * 5 4 3 7 7 C 1.36290 * 120.19345 * 180.02562 * 2 1 3 8 8 N 1.33202 * 108.60996 * 179.97438 * 6 5 4 9 9 C 1.32329 * 109.81252 * 0.02562 * 8 6 5 10 10 C 1.38303 * 132.38808 * 179.97438 * 5 4 3 11 11 C 1.41809 * 126.78665 * 0.29462 * 10 5 4 12 12 O 1.21772 * 120.00504 * 354.54955 * 11 10 5 13 13 N 1.34784 * 119.99397 * 174.55596 * 11 10 5 14 14 C 1.46505 * 119.99598 * 185.04790 * 13 11 10 15 15 H 1.09004 * 109.47203 * 34.99982 * 14 13 11 16 16 C 1.52999 * 109.47059 * 275.00136 * 14 13 11 17 17 C 1.53001 * 109.47084 * 154.99910 * 14 13 11 18 18 C 1.52996 * 109.47095 * 295.00170 * 17 14 13 19 19 C 1.53001 * 109.47095 * 179.97438 * 18 17 14 20 20 C 1.52996 * 109.47095 * 180.02562 * 19 18 17 21 21 N 1.46504 * 109.46938 * 179.97438 * 20 19 18 22 22 C 1.36942 * 119.99702 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00401 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99890 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00395 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99935 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46892 * 89.99919 * 26 24 22 28 28 H 1.48489 * 109.47022 * 209.99914 * 26 24 22 29 29 H 1.48499 * 109.47063 * 330.00460 * 26 24 22 30 30 H 1.08997 * 109.46940 * 89.99180 * 1 2 3 31 31 H 1.08992 * 109.47381 * 209.99538 * 1 2 3 32 32 H 1.08997 * 109.46950 * 329.99983 * 1 2 3 33 33 H 1.08004 * 119.93860 * 0.02562 * 3 2 1 34 34 H 1.07991 * 119.68387 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.30430 * 0.02562 * 7 2 1 36 36 H 1.08006 * 125.89115 * 180.02562 * 9 8 6 37 37 H 0.96991 * 120.00393 * 5.05043 * 13 11 10 38 38 H 1.09001 * 109.47083 * 59.99893 * 16 14 13 39 39 H 1.08997 * 109.47302 * 180.02562 * 16 14 13 40 40 H 1.09004 * 109.46986 * 299.99978 * 16 14 13 41 41 H 1.08998 * 109.46895 * 55.00047 * 17 14 13 42 42 H 1.08993 * 109.47062 * 174.99870 * 17 14 13 43 43 H 1.08998 * 109.47148 * 299.99721 * 18 17 14 44 44 H 1.09007 * 109.47417 * 59.99816 * 18 17 14 45 45 H 1.08998 * 109.46895 * 299.99876 * 19 18 17 46 46 H 1.08993 * 109.47062 * 59.99700 * 19 18 17 47 47 H 1.08998 * 109.47148 * 299.99721 * 20 19 18 48 48 H 1.09001 * 109.47420 * 60.00256 * 20 19 18 49 49 H 0.96989 * 120.00220 * 0.02562 * 21 20 19 50 50 H 0.96998 * 120.00091 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2121 1.2114 0.0000 4 6 3.5648 1.2098 -0.0005 5 7 4.2560 0.0391 -0.0005 6 6 3.5988 -1.1581 -0.0005 7 6 2.1925 -1.1780 -0.0005 8 7 4.5008 -2.1383 -0.0011 9 6 5.7206 -1.6252 -0.0009 10 6 5.6097 -0.2444 -0.0014 11 6 6.6736 0.6931 0.0031 12 8 6.4365 1.8838 -0.0916 13 7 7.9474 0.2662 0.1123 14 6 9.0380 1.2375 0.2284 15 1 8.6980 2.0986 0.8040 16 6 9.4652 1.6941 -1.1680 17 6 10.2270 0.5869 0.9383 18 6 9.8362 0.2432 2.3770 19 6 11.0249 -0.4081 3.0867 20 6 10.6339 -0.7524 4.5252 21 7 11.7720 -1.3765 5.2046 22 6 11.6568 -1.7722 6.5105 23 1 10.7272 -1.6238 7.0398 24 6 12.7354 -2.3631 7.1544 25 7 12.6249 -2.7429 8.4097 26 14 14.3436 -2.6191 6.2392 27 1 15.2096 -1.4260 6.4169 28 1 15.0349 -3.8174 6.7789 29 1 14.0647 -2.8173 4.7941 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6744 2.1481 0.0004 34 1 4.1007 2.1473 -0.0001 35 1 1.6606 -2.1180 -0.0014 36 1 6.6435 -2.1862 -0.0017 37 1 8.1420 -0.6840 0.1139 38 1 8.6182 2.1576 -1.6737 39 1 10.2769 2.4164 -1.0816 40 1 9.8052 0.8330 -1.7435 41 1 10.5106 -0.3241 0.4113 42 1 11.0688 1.2792 0.9460 43 1 9.5526 1.1542 2.9040 44 1 8.9943 -0.4492 2.3693 45 1 11.3081 -1.3191 2.5596 46 1 11.8670 0.2839 3.0944 47 1 10.3504 0.1584 5.0526 48 1 9.7919 -1.4446 4.5172 49 1 12.6073 -1.5088 4.7296 50 1 13.3787 -3.1555 8.8597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170963579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:39 Heat of formation + Delta-G solvation = 43.980376 kcal Electronic energy + Delta-G solvation = -28843.558252 eV Core-core repulsion = 24871.648744 eV Total energy + Delta-G solvation = -3971.909507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.32306 -40.00302 -38.21293 -37.08289 -35.47178 -34.60276 -33.38087 -32.15691 -31.07888 -30.57542 -30.25910 -27.77231 -27.58052 -24.44596 -24.13709 -23.80891 -22.05740 -21.78042 -21.13036 -20.90631 -20.70004 -18.62850 -17.48501 -17.34256 -17.04870 -16.61751 -16.26379 -15.55598 -15.20943 -15.10612 -14.87766 -14.59756 -14.47374 -14.22503 -14.06495 -13.95679 -13.56391 -13.31567 -13.09162 -13.04898 -12.71597 -12.63437 -12.44316 -12.27361 -12.19565 -11.91865 -11.68187 -11.47335 -11.18277 -11.04881 -10.89055 -10.83713 -10.77342 -10.41070 -10.33943 -10.16864 -10.08801 -9.56736 -9.41555 -9.30972 -8.86570 -8.25975 -7.19777 -5.74202 -3.09387 0.25941 0.36713 1.89127 1.93940 3.01166 3.04526 3.10961 3.38798 3.41479 3.46437 3.64509 4.03597 4.18225 4.26498 4.43919 4.57137 4.59841 4.61358 4.76468 4.81802 4.89746 4.90835 5.02407 5.08605 5.17754 5.21611 5.30387 5.34345 5.39764 5.48772 5.50402 5.54272 5.59265 5.65181 5.74116 5.80511 5.86943 5.98868 6.01253 6.02648 6.07806 6.13531 6.19091 6.30475 6.37065 6.50365 6.79615 6.83250 7.16637 7.32034 7.90346 8.02982 8.45117 9.24693 9.97108 10.17434 11.44376 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.001953 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.296180 B =14334.276067 C =15744.199267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.144 4.144 4 C 0.080 3.920 5 N -0.324 5.324 6 C 0.250 3.750 7 C -0.096 4.096 8 N -0.495 5.495 9 C 0.112 3.888 10 C -0.150 4.150 11 C 0.602 3.398 12 O -0.557 6.557 13 N -0.712 5.712 14 C 0.146 3.854 15 H 0.089 0.911 16 C -0.163 4.163 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.156 3.844 21 N -0.758 5.758 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.191 0.809 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.239 8.817 -25.633 35.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.164 4.164 4 C -0.045 4.045 5 N 0.007 4.993 6 C 0.010 3.990 7 C -0.116 4.116 8 N -0.214 5.214 9 C -0.049 4.049 10 C -0.264 4.264 11 C 0.391 3.609 12 O -0.438 6.438 13 N -0.363 5.363 14 C 0.042 3.958 15 H 0.107 0.893 16 C -0.222 4.222 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.167 4.167 20 C 0.029 3.971 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.194 4.194 25 N -0.584 5.584 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.195 0.805 35 H 0.173 0.827 36 H 0.208 0.792 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.628 8.850 -25.444 35.181 hybrid contribution 1.625 0.095 -0.453 1.689 sum -21.003 8.945 -25.897 34.522 Atomic orbital electron populations 1.20818 0.89223 1.03815 1.03172 1.19909 0.97385 0.91957 0.96655 1.20892 0.91917 0.99617 1.03952 1.22056 0.93022 0.89642 0.99788 1.42415 1.06418 1.07673 1.42840 1.21085 0.94560 0.80207 1.03157 1.20182 0.87982 0.99964 1.03514 1.70540 0.99009 1.28664 1.23149 1.23220 0.96741 0.89326 0.95637 1.19810 0.82752 0.96224 1.27611 1.15357 0.82101 0.86893 0.76532 1.90799 1.84495 1.16895 1.51588 1.45734 1.05257 1.10632 1.74704 1.21054 0.86093 0.92002 0.96641 0.89254 1.22182 1.01769 1.01544 0.96677 1.21954 0.96941 1.01425 0.96227 1.21523 0.98545 1.01061 0.94202 1.21775 0.97741 1.00329 0.96881 1.20632 0.90881 0.95691 0.89922 1.42733 1.11505 1.74147 1.11959 1.19091 0.99709 1.32244 0.86315 0.89292 1.24694 0.97847 1.00933 0.95918 1.69706 1.31268 1.47085 1.10294 0.86509 0.84946 0.77590 0.79268 1.21113 1.21724 1.20355 0.90230 0.90618 0.90657 0.82632 0.80488 0.82663 0.79185 0.76332 0.92141 0.91469 0.92426 0.91201 0.90058 0.91804 0.91874 0.92117 0.92092 0.95736 0.95762 0.80741 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.34 10.02 36.01 0.36 0.02 16 2 C -0.05 -0.32 5.88 -104.60 -0.62 -0.93 16 3 C -0.14 -0.88 9.68 -39.92 -0.39 -1.27 16 4 C 0.08 0.71 10.51 -16.78 -0.18 0.53 16 5 N -0.32 -3.58 2.96 -60.15 -0.18 -3.76 16 6 C 0.25 2.75 7.77 -156.07 -1.21 1.54 16 7 C -0.10 -0.76 9.75 -39.37 -0.38 -1.15 16 8 N -0.50 -5.95 11.25 -12.27 -0.14 -6.09 16 9 C 0.11 1.15 11.32 -17.23 -0.20 0.95 16 10 C -0.15 -1.69 6.83 -83.47 -0.57 -2.26 16 11 C 0.60 6.92 7.55 -14.89 -0.11 6.81 16 12 O -0.56 -7.81 15.03 5.12 0.08 -7.73 16 13 N -0.71 -6.42 4.51 -56.63 -0.26 -6.67 16 14 C 0.15 1.32 2.54 -67.93 -0.17 1.15 16 15 H 0.09 0.96 7.65 -51.93 -0.40 0.56 16 16 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 17 C -0.13 -1.11 4.75 -26.73 -0.13 -1.24 16 18 C -0.12 -1.31 5.10 -26.73 -0.14 -1.45 16 19 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 20 C 0.16 3.07 6.26 -4.04 -0.03 3.05 16 21 N -0.76 -18.61 5.41 -59.91 -0.32 -18.94 16 22 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 23 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 24 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 25 N -0.94 -29.97 13.97 55.49 0.78 -29.19 16 26 Si 0.89 22.47 27.74 -169.99 -4.71 17.76 16 27 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.07 0.15 8.10 -51.93 -0.42 -0.27 16 33 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.18 1.57 6.81 -52.49 -0.36 1.21 16 35 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.19 1.26 7.38 -52.48 -0.39 0.87 16 37 H 0.40 2.76 7.39 -40.82 -0.30 2.46 16 38 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.71 7.75 -51.92 -0.40 0.31 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 50 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -37.24 411.04 -10.36 -47.59 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.00 Total: 5.44 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.80 Total: -4.60 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.12 Total: -64.65 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.24 -10.36 -47.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170963579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.575 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds