Wall clock time and date at job start Wed Apr 1 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40168 * 120.20057 * 2 1 4 4 C 1.35265 * 120.13065 * 180.02562 * 3 2 1 5 5 N 1.35955 * 120.63060 * 359.97438 * 4 3 2 6 6 C 1.36577 * 120.67427 * 0.02562 * 5 4 3 7 7 C 1.36290 * 120.19345 * 180.02562 * 2 1 3 8 8 N 1.33202 * 108.60996 * 179.97438 * 6 5 4 9 9 C 1.32329 * 109.81252 * 0.02562 * 8 6 5 10 10 C 1.38303 * 132.38808 * 179.97438 * 5 4 3 11 11 C 1.41809 * 126.78665 * 0.29462 * 10 5 4 12 12 O 1.21772 * 120.00504 * 354.54955 * 11 10 5 13 13 N 1.34784 * 119.99397 * 174.55596 * 11 10 5 14 14 C 1.46505 * 119.99598 * 185.04790 * 13 11 10 15 15 H 1.09004 * 109.47203 * 34.99982 * 14 13 11 16 16 C 1.52999 * 109.47059 * 275.00136 * 14 13 11 17 17 C 1.53001 * 109.47084 * 154.99910 * 14 13 11 18 18 C 1.52996 * 109.47095 * 295.00170 * 17 14 13 19 19 C 1.53001 * 109.47095 * 179.97438 * 18 17 14 20 20 C 1.52996 * 109.47095 * 180.02562 * 19 18 17 21 21 N 1.46504 * 109.46938 * 179.97438 * 20 19 18 22 22 C 1.36942 * 119.99702 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00401 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99890 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00395 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99935 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46892 * 89.99919 * 26 24 22 28 28 H 1.48489 * 109.47022 * 209.99914 * 26 24 22 29 29 H 1.48499 * 109.47063 * 330.00460 * 26 24 22 30 30 H 1.08997 * 109.46940 * 89.99180 * 1 2 3 31 31 H 1.08992 * 109.47381 * 209.99538 * 1 2 3 32 32 H 1.08997 * 109.46950 * 329.99983 * 1 2 3 33 33 H 1.08004 * 119.93860 * 0.02562 * 3 2 1 34 34 H 1.07991 * 119.68387 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.30430 * 0.02562 * 7 2 1 36 36 H 1.08006 * 125.89115 * 180.02562 * 9 8 6 37 37 H 0.96991 * 120.00393 * 5.05043 * 13 11 10 38 38 H 1.09001 * 109.47083 * 59.99893 * 16 14 13 39 39 H 1.08997 * 109.47302 * 180.02562 * 16 14 13 40 40 H 1.09004 * 109.46986 * 299.99978 * 16 14 13 41 41 H 1.08998 * 109.46895 * 55.00047 * 17 14 13 42 42 H 1.08993 * 109.47062 * 174.99870 * 17 14 13 43 43 H 1.08998 * 109.47148 * 299.99721 * 18 17 14 44 44 H 1.09007 * 109.47417 * 59.99816 * 18 17 14 45 45 H 1.08998 * 109.46895 * 299.99876 * 19 18 17 46 46 H 1.08993 * 109.47062 * 59.99700 * 19 18 17 47 47 H 1.08998 * 109.47148 * 299.99721 * 20 19 18 48 48 H 1.09001 * 109.47420 * 60.00256 * 20 19 18 49 49 H 0.96989 * 120.00220 * 0.02562 * 21 20 19 50 50 H 0.96998 * 120.00091 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2121 1.2114 0.0000 4 6 3.5648 1.2098 -0.0005 5 7 4.2560 0.0391 -0.0005 6 6 3.5988 -1.1581 -0.0005 7 6 2.1925 -1.1780 -0.0005 8 7 4.5008 -2.1383 -0.0011 9 6 5.7206 -1.6252 -0.0009 10 6 5.6097 -0.2444 -0.0014 11 6 6.6736 0.6931 0.0031 12 8 6.4365 1.8838 -0.0916 13 7 7.9474 0.2662 0.1123 14 6 9.0380 1.2375 0.2284 15 1 8.6980 2.0986 0.8040 16 6 9.4652 1.6941 -1.1680 17 6 10.2270 0.5869 0.9383 18 6 9.8362 0.2432 2.3770 19 6 11.0249 -0.4081 3.0867 20 6 10.6339 -0.7524 4.5252 21 7 11.7720 -1.3765 5.2046 22 6 11.6568 -1.7722 6.5105 23 1 10.7272 -1.6238 7.0398 24 6 12.7354 -2.3631 7.1544 25 7 12.6249 -2.7429 8.4097 26 14 14.3436 -2.6191 6.2392 27 1 15.2096 -1.4260 6.4169 28 1 15.0349 -3.8174 6.7789 29 1 14.0647 -2.8173 4.7941 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6744 2.1481 0.0004 34 1 4.1007 2.1473 -0.0001 35 1 1.6606 -2.1180 -0.0014 36 1 6.6435 -2.1862 -0.0017 37 1 8.1420 -0.6840 0.1139 38 1 8.6182 2.1576 -1.6737 39 1 10.2769 2.4164 -1.0816 40 1 9.8052 0.8330 -1.7435 41 1 10.5106 -0.3241 0.4113 42 1 11.0688 1.2792 0.9460 43 1 9.5526 1.1542 2.9040 44 1 8.9943 -0.4492 2.3693 45 1 11.3081 -1.3191 2.5596 46 1 11.8670 0.2839 3.0944 47 1 10.3504 0.1584 5.0526 48 1 9.7919 -1.4446 4.5172 49 1 12.6073 -1.5088 4.7296 50 1 13.3787 -3.1555 8.8597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170963579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:38 Heat of formation + Delta-G solvation = 20.166161 kcal Electronic energy + Delta-G solvation = -28844.590913 eV Core-core repulsion = 24871.648744 eV Total energy + Delta-G solvation = -3972.942169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.03044 -40.81764 -38.82635 -38.09593 -36.96770 -35.28507 -34.77864 -33.44427 -32.48741 -31.36612 -30.91231 -29.06130 -28.12829 -25.81688 -24.76334 -24.75272 -23.46873 -22.56012 -22.21369 -21.94047 -21.51444 -19.65008 -19.31657 -17.99854 -17.78405 -17.37256 -17.03339 -16.63980 -16.27427 -16.13208 -15.88609 -15.74425 -15.61366 -15.24599 -14.90858 -14.75987 -14.62974 -14.34708 -14.22666 -14.13878 -13.55298 -13.50674 -13.09714 -13.04435 -12.96100 -12.92769 -12.89811 -12.70462 -12.47875 -12.26484 -12.08310 -11.89121 -11.77872 -11.61364 -11.60310 -11.47106 -11.43790 -11.03124 -10.98063 -10.20366 -10.00414 -9.31998 -8.95271 -8.04729 -5.39149 -0.39107 -0.28352 1.18700 1.24946 1.37189 1.42199 1.49847 2.25120 2.34395 2.37903 2.47843 3.03138 3.26156 3.39757 3.48201 3.65587 3.70611 3.81249 3.92146 4.02182 4.04085 4.08635 4.24470 4.33505 4.35923 4.39380 4.57595 4.64267 4.64944 4.73434 4.76635 4.83431 4.87870 4.90223 4.92259 4.98598 5.01791 5.10961 5.18138 5.23065 5.26131 5.33240 5.35032 5.42214 5.47988 5.50923 5.57090 5.72887 5.83232 6.19529 6.42190 6.58375 7.06251 7.11770 7.82218 8.03156 9.16929 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.001953 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.296180 B =14334.276067 C =15744.199267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.039 4.039 3 C -0.125 4.125 4 C 0.049 3.951 5 N -0.333 5.333 6 C 0.232 3.768 7 C -0.114 4.114 8 N -0.528 5.528 9 C 0.115 3.885 10 C -0.180 4.180 11 C 0.601 3.399 12 O -0.592 6.592 13 N -0.701 5.701 14 C 0.148 3.852 15 H 0.069 0.931 16 C -0.157 4.157 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.116 4.116 20 C 0.149 3.851 21 N -0.760 5.760 22 C -0.243 4.243 23 H 0.050 0.950 24 C -0.068 4.068 25 N -0.985 5.985 26 Si 0.963 3.037 27 H -0.276 1.276 28 H -0.294 1.294 29 H -0.247 1.247 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.191 0.809 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.219 0.781 37 H 0.413 0.587 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.015 0.985 48 H 0.018 0.982 49 H 0.368 0.632 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.264 9.020 -28.180 37.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.046 4.046 3 C -0.145 4.145 4 C -0.075 4.075 5 N -0.002 5.002 6 C -0.007 4.007 7 C -0.134 4.134 8 N -0.248 5.248 9 C -0.047 4.047 10 C -0.293 4.293 11 C 0.391 3.609 12 O -0.475 6.475 13 N -0.353 5.353 14 C 0.044 3.956 15 H 0.087 0.913 16 C -0.215 4.215 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.153 4.153 20 C 0.023 3.977 21 N -0.406 5.406 22 C -0.374 4.374 23 H 0.068 0.932 24 C -0.260 4.260 25 N -0.635 5.635 26 Si 0.789 3.211 27 H -0.202 1.202 28 H -0.220 1.220 29 H -0.171 1.171 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.208 0.792 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.236 0.764 37 H 0.250 0.750 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.033 0.967 48 H 0.036 0.964 49 H 0.201 0.799 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.664 9.062 -28.036 37.173 hybrid contribution 1.392 0.091 0.404 1.452 sum -21.272 9.153 -27.632 36.053 Atomic orbital electron populations 1.20932 0.86461 1.05053 1.04404 1.20347 0.99147 0.91049 0.94024 1.21390 0.90894 1.01290 1.00901 1.22296 0.94183 0.89075 1.01947 1.42572 1.06517 1.08220 1.42898 1.21604 0.95678 0.80164 1.03261 1.20546 0.86940 1.01586 1.04294 1.70519 0.99838 1.29550 1.24861 1.23706 0.97353 0.89183 0.94438 1.19935 0.83092 0.96631 1.29623 1.15478 0.82833 0.86458 0.76162 1.90768 1.85044 1.18173 1.53511 1.45671 1.04539 1.11353 1.73717 1.21020 0.86035 0.91426 0.97088 0.91328 1.22118 1.01352 1.02245 0.95794 1.21860 0.96801 1.02531 0.94133 1.21448 0.97293 1.00348 0.95634 1.21659 0.99061 1.01246 0.93365 1.20855 0.89410 0.94589 0.92857 1.42735 1.13182 1.74209 1.10445 1.19065 0.98304 1.31747 0.88278 0.93188 1.25640 1.02319 1.01063 0.96931 1.69905 1.32637 1.48512 1.12480 0.85289 0.79146 0.77352 0.79275 1.20230 1.22046 1.17139 0.88768 0.89825 0.89042 0.79170 0.81203 0.81163 0.76438 0.74973 0.94117 0.90209 0.91061 0.89272 0.88872 0.92747 0.91891 0.90954 0.91367 0.96701 0.96399 0.79867 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.31 10.02 71.24 0.71 0.40 16 2 C -0.04 -0.40 5.88 -19.85 -0.12 -0.51 16 3 C -0.13 -1.35 9.68 22.05 0.21 -1.14 16 4 C 0.05 0.90 10.51 83.37 0.88 1.78 16 5 N -0.33 -7.64 2.96 -344.21 -1.02 -8.65 16 6 C 0.23 5.22 7.77 134.00 1.04 6.26 16 7 C -0.11 -1.73 9.75 22.40 0.22 -1.51 16 8 N -0.53 -13.00 11.25 -192.73 -2.17 -15.17 16 9 C 0.11 2.38 11.32 84.69 0.96 3.34 16 10 C -0.18 -4.20 6.83 39.07 0.27 -3.93 16 11 C 0.60 14.26 7.55 85.12 0.64 14.90 16 12 O -0.59 -17.43 15.03 -4.58 -0.07 -17.50 16 13 N -0.70 -12.23 4.51 -451.27 -2.03 -14.26 16 14 C 0.15 2.50 2.54 44.99 0.11 2.62 16 15 H 0.07 1.48 7.65 -2.39 -0.02 1.46 16 16 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 17 C -0.12 -1.69 4.75 30.59 0.15 -1.55 16 18 C -0.11 -2.28 5.10 30.59 0.16 -2.12 16 19 C -0.12 -3.08 5.33 30.59 0.16 -2.92 16 20 C 0.15 5.78 6.26 86.38 0.54 6.32 16 21 N -0.76 -36.62 5.41 -343.45 -1.86 -38.47 16 22 C -0.24 -14.46 10.47 84.03 0.88 -13.58 16 23 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.99 -64.58 13.97 21.65 0.30 -64.28 16 26 Si 0.96 45.82 27.74 68.60 1.90 47.72 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 28 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.25 -10.42 6.52 99.48 0.65 -9.78 16 30 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 32 H 0.09 0.02 8.10 -2.39 -0.02 0.00 16 33 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.17 3.24 6.81 -2.91 -0.02 3.22 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.22 2.74 7.38 -2.91 -0.02 2.72 16 37 H 0.41 5.12 7.39 -92.71 -0.69 4.43 16 38 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.33 7.75 -2.38 -0.02 1.31 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.37 16.47 5.53 -92.72 -0.51 15.96 16 50 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -84.34 411.04 2.72 -81.62 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.31 Total: 25.95 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 7.96 Total: 3.05 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -6.77 Total: -140.84 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.07 Total: -17.50 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.72 kcal Total: -84.34 2.72 -81.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170963579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.786 kcal (2) G-P(sol) polarization free energy of solvation -84.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds