Wall clock time and date at job start Wed Apr 1 2020 03:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40165 * 120.29572 * 2 1 4 4 C 1.35187 * 120.31817 * 180.02562 * 3 2 1 5 5 N 1.36247 * 120.70825 * 0.04487 * 4 3 2 6 6 N 1.40010 * 132.01752 * 180.02562 * 5 4 3 7 7 C 1.30739 * 109.60669 * 179.68949 * 6 5 4 8 8 C 1.40554 * 108.74395 * 0.41281 * 7 6 5 9 9 C 1.46561 * 126.57745 * 179.85359 * 8 7 6 10 10 O 1.21726 * 119.99808 * 179.69001 * 9 8 7 11 11 N 1.34778 * 120.00295 * 359.69049 * 9 8 7 12 12 C 1.46500 * 119.99992 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47120 * 324.99235 * 12 11 9 14 14 C 1.52999 * 109.47548 * 84.99863 * 12 11 9 15 15 C 1.53006 * 109.46857 * 205.00038 * 12 11 9 16 16 C 1.52999 * 109.46997 * 64.99738 * 15 12 11 17 17 C 1.53006 * 109.46623 * 179.97438 * 16 15 12 18 18 C 1.52999 * 109.46626 * 179.97438 * 17 16 15 19 19 N 1.46506 * 109.46691 * 179.97438 * 18 17 16 20 20 C 1.36938 * 119.99597 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00321 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99825 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00262 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99923 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47174 * 89.99720 * 24 22 20 26 26 H 1.48504 * 109.46913 * 209.99970 * 24 22 20 27 27 H 1.48501 * 109.47062 * 329.99769 * 24 22 20 28 28 C 1.36582 * 120.07670 * 359.95651 * 5 4 3 29 29 C 1.36452 * 120.29677 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47141 * 269.97503 * 1 2 3 31 31 H 1.09006 * 109.47472 * 29.97302 * 1 2 3 32 32 H 1.09003 * 109.47502 * 149.97606 * 1 2 3 33 33 H 1.07997 * 119.83950 * 0.02626 * 3 2 1 34 34 H 1.07997 * 119.64737 * 180.02562 * 4 3 2 35 35 H 1.08002 * 125.62383 * 180.24422 * 7 6 5 36 36 H 0.97001 * 119.99750 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46911 * 299.99864 * 14 12 11 38 38 H 1.08992 * 109.47188 * 59.99700 * 14 12 11 39 39 H 1.08997 * 109.46828 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.46866 * 304.99526 * 15 12 11 41 41 H 1.09001 * 109.46611 * 184.99643 * 15 12 11 42 42 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 43 43 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 44 44 H 1.08993 * 109.46955 * 300.00075 * 17 16 15 45 45 H 1.09000 * 109.47050 * 59.99904 * 17 16 15 46 46 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 47 47 H 1.09000 * 109.47160 * 60.00369 * 18 17 16 48 48 H 0.96999 * 120.00076 * 0.02562 * 19 18 17 49 49 H 0.97000 * 119.99891 * 179.97438 * 23 22 20 50 50 H 1.08005 * 120.37111 * 359.95213 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2621 0.0396 -0.0020 6 7 5.6351 -0.2344 -0.0023 7 6 5.8243 -1.5280 0.0028 8 6 4.5727 -2.1676 -0.0029 9 6 4.3305 -3.6130 -0.0030 10 8 3.1902 -4.0390 -0.0025 11 7 5.3702 -4.4706 -0.0035 12 6 5.1280 -5.9154 -0.0042 13 1 4.2379 -6.1349 0.5854 14 6 4.9195 -6.3970 -1.4414 15 6 6.3333 -6.6348 0.6050 16 6 6.4669 -6.2474 2.0790 17 6 7.6717 -6.9673 2.6883 18 6 7.8057 -6.5793 4.1622 19 7 8.9590 -7.2691 4.7457 20 6 9.2784 -7.0747 6.0630 21 1 8.6800 -6.4133 6.6719 22 6 10.3715 -7.7279 6.6158 23 7 10.6783 -7.5415 7.8822 24 14 11.4071 -8.8714 5.5625 25 1 12.5044 -8.0997 4.9258 26 1 11.9843 -9.9420 6.4145 27 1 10.5556 -9.4815 4.5099 28 6 3.5959 -1.1527 -0.0020 29 6 2.1953 -1.1782 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6762 2.1468 0.0004 34 1 4.0997 2.1496 -0.0001 35 1 6.7840 -2.0234 0.0075 36 1 6.2789 -4.1311 -0.0043 37 1 4.0609 -5.8846 -1.8753 38 1 5.8096 -6.1776 -2.0309 39 1 4.7398 -7.4721 -1.4418 40 1 7.2377 -6.3455 0.0698 41 1 6.1921 -7.7126 0.5239 42 1 5.5625 -6.5367 2.6142 43 1 6.6081 -5.1696 2.1601 44 1 7.5302 -8.0449 2.6072 45 1 8.5763 -6.6784 2.1532 46 1 7.9475 -5.5017 4.2429 47 1 6.9012 -6.8679 4.6975 48 1 9.4968 -7.8629 4.1987 49 1 11.4419 -7.9982 8.2685 50 1 1.6662 -2.1197 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171360459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:13 Heat of formation + Delta-G solvation = 56.739184 kcal Electronic energy + Delta-G solvation = -28765.945078 eV Core-core repulsion = 24794.588835 eV Total energy + Delta-G solvation = -3971.356244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.55787 -39.70063 -38.05407 -36.90121 -35.35378 -34.03252 -33.22876 -31.78279 -31.67352 -30.67716 -29.55778 -27.71728 -27.56520 -24.51227 -24.07917 -23.16662 -22.42174 -21.71597 -20.87752 -20.73886 -20.38308 -18.33367 -17.47504 -17.21519 -16.71163 -16.33507 -16.20652 -15.59878 -15.14248 -15.02043 -14.82921 -14.54023 -14.18031 -14.04986 -13.96314 -13.83236 -13.46716 -13.23358 -13.11874 -12.98372 -12.68202 -12.46723 -12.33479 -12.29542 -11.94180 -11.86518 -11.60360 -11.41563 -11.24808 -11.11620 -10.84247 -10.80156 -10.72577 -10.36403 -10.28985 -10.06707 -9.94520 -9.79316 -9.55241 -9.16418 -8.85138 -8.04508 -7.18202 -5.73068 -3.08039 0.18339 0.56060 1.70988 1.83364 2.73459 3.11243 3.38435 3.39869 3.42574 3.47303 3.78077 4.01284 4.09745 4.34956 4.53364 4.58847 4.62498 4.69239 4.88313 4.89001 4.92921 4.98979 5.05702 5.12259 5.18908 5.26170 5.37333 5.38017 5.42219 5.51650 5.53627 5.61675 5.63693 5.71950 5.82072 5.88852 5.91649 5.92829 6.00991 6.10515 6.12123 6.22171 6.23564 6.34898 6.41969 6.47160 6.82702 6.86362 7.02788 7.46292 8.04338 8.21540 8.46350 9.26027 9.98514 10.19010 11.45541 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.001905 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.761874 B =14693.846763 C =15709.582379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 C -0.157 4.157 4 C 0.114 3.886 5 N -0.270 5.270 6 N -0.318 5.318 7 C 0.121 3.879 8 C -0.316 4.316 9 C 0.602 3.398 10 O -0.554 6.554 11 N -0.721 5.721 12 C 0.144 3.856 13 H 0.089 0.911 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.169 3.831 29 C -0.112 4.112 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.199 0.801 36 H 0.397 0.603 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.179 17.147 -24.623 36.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.179 4.179 4 C -0.013 4.013 5 N -0.034 5.034 6 N -0.138 5.138 7 C -0.059 4.059 8 C -0.331 4.331 9 C 0.391 3.609 10 O -0.434 6.434 11 N -0.372 5.372 12 C 0.040 3.960 13 H 0.107 0.893 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.404 5.404 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.584 5.584 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C 0.048 3.952 29 C -0.132 4.132 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.215 0.785 36 H 0.232 0.768 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.267 18.026 -24.383 36.472 hybrid contribution 1.141 -1.357 -0.543 1.854 sum -19.126 16.670 -24.926 35.567 Atomic orbital electron populations 1.20860 0.89346 1.03763 1.03384 1.20096 0.97489 0.92137 0.95019 1.20863 0.91833 0.99741 1.05453 1.21580 0.92054 0.88399 0.99218 1.46086 1.06414 1.05354 1.45510 1.77615 0.88011 1.17045 1.31167 1.24097 0.98726 0.90496 0.92623 1.19687 0.91386 0.93485 1.28530 1.16803 0.84718 0.84106 0.75274 1.90753 1.21846 1.79082 1.51715 1.45810 1.08895 1.06399 1.76052 1.20999 0.99452 0.78938 0.96605 0.89253 1.22177 1.02032 1.01415 0.96475 1.21941 0.97199 1.00849 0.96507 1.21514 0.98853 1.00628 0.94261 1.21778 0.97585 1.00272 0.97085 1.20635 0.90473 0.95486 0.90532 1.42743 1.32599 1.54924 1.10101 1.19096 1.09792 1.22984 0.85402 0.89291 1.24696 0.98625 1.00237 0.95888 1.69711 1.30026 1.47046 1.11621 0.86508 0.80735 0.81194 0.79876 1.21111 1.21742 1.20347 1.19297 0.92994 0.85669 0.97238 1.20750 0.89948 1.00259 1.02195 0.90001 0.90704 0.90504 0.82405 0.80944 0.78463 0.76830 0.92222 0.92589 0.91649 0.91401 0.90286 0.91794 0.91871 0.92137 0.92193 0.95730 0.95750 0.80747 0.93118 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 10.03 36.00 0.36 -0.07 16 2 C -0.04 -0.27 5.89 -104.55 -0.62 -0.88 16 3 C -0.16 -0.78 9.67 -39.94 -0.39 -1.16 16 4 C 0.11 0.75 11.17 -16.68 -0.19 0.57 16 5 N -0.27 -2.75 3.86 -10.55 -0.04 -2.79 16 6 N -0.32 -3.54 12.57 30.75 0.39 -3.15 16 7 C 0.12 1.19 11.44 -17.14 -0.20 0.99 16 8 C -0.32 -3.59 6.17 -104.68 -0.65 -4.24 16 9 C 0.60 7.31 7.75 -12.90 -0.10 7.21 16 10 O -0.55 -8.27 15.37 5.17 0.08 -8.19 16 11 N -0.72 -6.95 4.52 -55.14 -0.25 -7.20 16 12 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 13 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 14 C -0.16 -1.43 9.48 37.16 0.35 -1.07 16 15 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 16 C -0.11 -1.36 5.10 -26.73 -0.14 -1.49 16 17 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 18 C 0.16 3.11 6.26 -4.04 -0.03 3.08 16 19 N -0.76 -18.76 5.41 -59.91 -0.32 -19.08 16 20 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 21 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 22 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 23 N -0.94 -30.07 13.97 55.49 0.78 -29.30 16 24 Si 0.89 22.57 27.74 -169.99 -4.71 17.85 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 28 C 0.17 1.88 6.76 -84.07 -0.57 1.31 16 29 C -0.11 -1.04 9.38 -39.53 -0.37 -1.42 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.15 8.10 -51.93 -0.42 -0.27 16 32 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.16 0.24 8.06 -52.49 -0.42 -0.19 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.20 1.21 7.46 -52.49 -0.39 0.82 16 36 H 0.40 2.96 7.52 -40.82 -0.31 2.65 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.36 8.60 5.53 -40.82 -0.23 8.38 16 49 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 50 H 0.16 1.58 7.12 -52.48 -0.37 1.21 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -37.71 413.09 -9.10 -46.80 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.02 Total: 5.52 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.22 Total: -6.70 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.55 Total: -61.52 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.71 -9.10 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171360459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.544 kcal (2) G-P(sol) polarization free energy of solvation -37.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds