Wall clock time and date at job start Wed Apr 1 2020 03:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40563 * 119.83210 * 2 1 4 4 C 1.35893 * 119.73233 * 180.02562 * 3 2 1 5 5 C 1.41189 * 119.34652 * 359.97438 * 4 3 2 6 6 N 1.32234 * 132.04671 * 180.33827 * 5 4 3 7 7 C 1.34581 * 109.02319 * 180.10545 * 6 5 4 8 8 C 1.47585 * 125.91666 * 179.88388 * 7 6 5 9 9 O 1.21595 * 119.99807 * 179.69580 * 8 7 6 10 10 N 1.34778 * 120.00255 * 359.69117 * 8 7 6 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8 13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8 14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00262 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99923 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99720 * 23 21 19 25 25 H 1.48504 * 109.46913 * 209.99970 * 23 21 19 26 26 H 1.48501 * 109.47062 * 329.99769 * 23 21 19 27 27 C 1.36569 * 108.16035 * 359.62340 * 7 6 5 28 28 N 1.36195 * 107.09860 * 0.22388 * 27 7 6 29 29 C 1.34850 * 119.82500 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47393 * 269.98046 * 1 2 3 31 31 H 1.09005 * 109.47188 * 29.97759 * 1 2 3 32 32 H 1.09000 * 109.47453 * 149.97844 * 1 2 3 33 33 H 1.08008 * 120.13342 * 0.02562 * 3 2 1 34 34 H 1.08006 * 120.32843 * 180.02562 * 4 3 2 35 35 H 0.97001 * 119.99750 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46828 * 179.97438 * 13 11 10 37 37 H 1.09002 * 109.46911 * 299.99864 * 13 11 10 38 38 H 1.08992 * 109.47188 * 59.99700 * 13 11 10 39 39 H 1.09000 * 109.46866 * 304.99526 * 14 11 10 40 40 H 1.09001 * 109.46611 * 184.99643 * 14 11 10 41 41 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 42 42 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 43 43 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 44 44 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 45 45 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 46 46 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 47 47 H 0.96999 * 120.00076 * 0.02562 * 18 17 16 48 48 H 0.97000 * 119.99891 * 179.97438 * 22 21 19 49 49 H 1.08004 * 126.45239 * 180.26991 * 27 7 6 50 50 H 1.08002 * 119.68145 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2194 0.0000 4 6 3.5652 1.2170 -0.0005 5 6 4.2550 -0.0149 -0.0005 6 7 5.5444 -0.3079 0.0048 7 6 5.6903 -1.6457 -0.0004 8 6 6.9724 -2.3768 0.0006 9 8 6.9789 -3.5927 0.0010 10 7 8.1360 -1.6967 0.0008 11 6 9.4086 -2.4225 0.0012 12 1 9.3071 -3.3337 0.5908 13 6 9.7898 -2.7845 -1.4356 14 6 10.4991 -1.5394 0.6111 15 6 10.1805 -1.2801 2.0849 16 6 11.2713 -0.3975 2.6949 17 6 10.9523 -0.1378 4.1686 18 7 11.9972 0.7068 4.7528 19 6 11.9239 1.0738 6.0700 20 1 11.0962 0.7403 6.6783 21 6 12.9136 1.8745 6.6235 22 7 12.8436 2.2269 7.8898 23 14 14.3450 2.4519 5.5712 24 1 13.9997 3.7481 4.9341 25 1 15.5484 2.6245 6.4241 26 1 14.6247 1.4421 4.5189 27 6 4.4465 -2.2096 -0.0008 28 7 3.5443 -1.1893 -0.0008 29 6 2.1777 -1.1699 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6656 2.1544 0.0004 34 1 4.1122 2.1483 -0.0001 35 1 8.1308 -0.7267 0.0000 36 1 10.7369 -3.3241 -1.4352 37 1 9.0129 -3.4137 -1.8701 38 1 9.8913 -1.8734 -2.0251 39 1 10.5400 -0.5907 0.0759 40 1 11.4621 -2.0437 0.5308 41 1 10.1396 -2.2288 2.6202 42 1 9.2175 -0.7758 2.1652 43 1 12.2341 -0.9022 2.6146 44 1 11.3126 0.5511 2.1597 45 1 9.9897 0.3670 4.2485 46 1 10.9108 -1.0863 4.7040 47 1 12.7404 1.0066 4.2064 48 1 13.5354 2.7861 8.2766 49 1 4.2207 -3.2658 -0.0003 50 1 1.6296 -2.1005 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171501981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:55 Heat of formation + Delta-G solvation = 20.393943 kcal Electronic energy + Delta-G solvation = -28509.748524 eV Core-core repulsion = 24536.816232 eV Total energy + Delta-G solvation = -3972.932292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.94067 -40.82681 -38.72133 -38.03956 -36.94906 -34.95733 -34.69448 -33.39444 -33.00178 -31.78111 -30.04153 -29.07066 -27.88895 -25.88547 -25.16539 -24.11831 -23.38637 -23.09354 -22.19299 -21.66757 -21.28593 -19.63832 -19.28397 -17.94368 -17.67427 -17.24504 -17.15179 -16.64619 -16.30777 -16.09181 -15.90236 -15.78507 -15.53820 -15.14840 -14.90970 -14.79469 -14.66165 -14.36402 -14.21175 -14.16868 -13.56859 -13.28605 -13.21074 -13.08713 -12.97961 -12.93361 -12.49883 -12.47914 -12.45671 -12.32690 -12.07025 -11.95233 -11.90116 -11.80412 -11.58874 -11.51409 -11.45330 -11.17531 -10.98932 -10.18035 -9.77493 -9.33040 -8.95880 -8.05298 -5.39807 -0.38774 0.14576 0.93276 1.36843 1.39960 1.41741 1.49320 2.17839 2.24265 2.47354 2.51191 2.96566 3.25341 3.37673 3.47864 3.65451 3.84217 3.90351 3.96627 4.00622 4.06353 4.11118 4.22095 4.32327 4.37405 4.42877 4.56355 4.62029 4.68918 4.74980 4.77687 4.85550 4.87992 4.90404 4.96302 4.98936 5.02599 5.09318 5.22097 5.22733 5.27557 5.30298 5.31333 5.40136 5.48045 5.52300 5.55862 5.71937 5.89383 6.18908 6.36114 6.63827 7.05201 7.12216 7.80882 8.02481 9.16355 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002001 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.962097 B =13989.982477 C =16033.329674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.097 4.097 3 C -0.080 4.080 4 C -0.099 4.099 5 C 0.208 3.792 6 N -0.495 5.495 7 C -0.025 4.025 8 C 0.600 3.400 9 O -0.571 6.571 10 N -0.698 5.698 11 C 0.140 3.860 12 H 0.074 0.926 13 C -0.156 4.156 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.115 4.115 17 C 0.150 3.850 18 N -0.759 5.759 19 C -0.244 4.244 20 H 0.050 0.950 21 C -0.068 4.068 22 N -0.984 5.984 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.249 1.249 27 C -0.021 4.021 28 N -0.362 5.362 29 C 0.030 3.970 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.368 0.632 48 H 0.259 0.741 49 H 0.212 0.788 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.711 -6.730 -27.269 38.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.103 4.103 4 C -0.119 4.119 5 C -0.038 4.038 6 N -0.217 5.217 7 C -0.157 4.157 8 C 0.386 3.614 9 O -0.450 6.450 10 N -0.349 5.349 11 C 0.036 3.964 12 H 0.093 0.907 13 C -0.214 4.214 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.405 5.405 19 C -0.374 4.374 20 H 0.068 0.932 21 C -0.259 4.259 22 N -0.635 5.635 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.174 1.174 27 C -0.158 4.158 28 N -0.032 5.032 29 C -0.090 4.090 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.195 0.805 34 H 0.182 0.818 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.201 0.799 48 H 0.068 0.932 49 H 0.228 0.772 50 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -26.094 -7.121 -27.062 38.262 hybrid contribution 0.400 0.238 0.329 0.570 sum -25.694 -6.883 -26.733 37.712 Atomic orbital electron populations 1.20812 0.86210 1.05012 1.04056 1.20024 0.99098 0.91023 0.99763 1.21510 0.92592 0.99933 0.96293 1.20639 0.94800 0.94093 1.02335 1.21451 0.87144 0.88900 1.06335 1.70729 1.15311 1.13056 1.22603 1.20624 0.94004 0.90485 1.10600 1.17062 0.82847 0.85852 0.75625 1.90761 1.87729 1.13828 1.52702 1.45934 1.04951 1.11164 1.72818 1.21134 0.82030 0.95554 0.97645 0.90740 1.22115 1.02094 1.02111 0.95097 1.21854 0.98390 1.00679 0.94389 1.21434 0.97947 0.99338 0.95951 1.21650 0.99653 1.00546 0.93403 1.20832 0.90612 0.92481 0.93687 1.42733 1.27515 1.61770 1.08524 1.19067 1.06509 1.24710 0.87159 0.93172 1.25637 1.02158 1.00692 0.97418 1.69907 1.37094 1.42517 1.13956 0.85287 0.78438 0.78936 0.78392 1.20081 1.21914 1.17360 1.22830 0.87084 0.94961 1.10885 1.42821 1.07341 1.07854 1.45197 1.22135 0.79196 1.02693 1.05002 0.89553 0.89134 0.89790 0.80465 0.81839 0.75091 0.89731 0.93786 0.91477 0.89955 0.88466 0.92367 0.92640 0.91140 0.91198 0.96593 0.96531 0.79865 0.93199 0.77177 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 10.00 71.24 0.71 0.69 16 2 C -0.10 -0.67 5.85 -20.08 -0.12 -0.79 16 3 C -0.08 -0.64 9.73 22.29 0.22 -0.42 16 4 C -0.10 -1.43 10.11 22.45 0.23 -1.20 16 5 C 0.21 4.49 7.79 134.21 1.05 5.53 16 6 N -0.50 -12.98 11.01 -183.50 -2.02 -15.00 16 7 C -0.02 -0.64 6.94 40.80 0.28 -0.36 16 8 C 0.60 16.57 7.79 86.71 0.68 17.24 16 9 O -0.57 -18.27 16.53 -4.02 -0.07 -18.34 16 10 N -0.70 -16.29 4.53 -445.62 -2.02 -18.31 16 11 C 0.14 2.89 2.57 44.99 0.12 3.01 16 12 H 0.07 1.80 7.58 -2.38 -0.02 1.79 16 13 C -0.16 -2.74 9.48 71.98 0.68 -2.05 16 14 C -0.12 -2.14 4.75 30.60 0.15 -1.99 16 15 C -0.11 -2.68 5.10 30.60 0.16 -2.52 16 16 C -0.11 -3.39 5.33 30.60 0.16 -3.23 16 17 C 0.15 6.16 6.26 86.38 0.54 6.70 16 18 N -0.76 -37.82 5.41 -343.45 -1.86 -39.68 16 19 C -0.24 -14.77 10.47 84.03 0.88 -13.89 16 20 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.98 -65.14 13.97 21.65 0.30 -64.83 16 23 Si 0.96 46.61 27.74 68.60 1.90 48.51 16 24 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 27 C -0.02 -0.44 11.47 83.63 0.96 0.51 16 28 N -0.36 -6.58 2.93 -351.25 -1.03 -7.61 16 29 C 0.03 0.30 10.54 83.16 0.88 1.18 16 30 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.09 -0.17 8.09 -2.38 -0.02 -0.19 16 32 H 0.08 -0.14 8.07 -2.39 -0.02 -0.16 16 33 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.41 9.12 8.30 -92.71 -0.77 8.35 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.47 7.75 -2.39 -0.02 1.45 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.37 17.05 5.53 -92.71 -0.51 16.54 16 48 H 0.26 16.20 8.31 -92.71 -0.77 15.42 16 49 H 0.21 3.41 8.06 -2.91 -0.02 3.38 16 50 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -83.86 416.02 2.85 -81.02 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.40 Total: 29.53 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 8.03 Total: 4.71 kcal Atomic # 7 Polarization: -138.81 SS G_CDS: -6.62 Total: -145.43 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.07 Total: -18.34 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.51 kcal Total: -83.86 2.85 -81.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171501981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.409 kcal (2) G-P(sol) polarization free energy of solvation -83.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds