Wall clock time and date at job start Wed Apr 1 2020 03:46:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.40396 * 120.21852 * 2 1
4 4 C 1.35030 * 120.43945 * 179.63106 * 3 2 1
5 5 N 1.36536 * 120.59890 * 0.61032 * 4 3 2
6 6 C 1.36245 * 132.78882 * 179.24638 * 5 4 3
7 7 N 1.30177 * 109.82468 * 180.02562 * 6 5 4
8 8 C 1.34891 * 109.73257 * 359.97438 * 7 6 5
9 9 C 1.46286 * 126.49810 * 180.02562 * 8 7 6
10 10 O 1.21768 * 120.00155 * 180.02562 * 9 8 7
11 11 N 1.34781 * 119.99923 * 0.02562 * 9 8 7
12 12 C 1.46501 * 120.00231 * 180.02562 * 11 9 8
13 13 H 1.08997 * 109.46643 * 324.99984 * 12 11 9
14 14 C 1.53002 * 109.47013 * 84.99743 * 12 11 9
15 15 C 1.52996 * 109.47049 * 204.99988 * 12 11 9
16 16 C 1.52997 * 109.47131 * 65.00110 * 15 12 11
17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12
18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15
19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16
20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17
21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18
22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18
23 23 N 1.31623 * 119.99595 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00541 * 180.02562 * 22 20 19
25 25 H 1.48499 * 109.47105 * 59.99692 * 24 22 20
26 26 H 1.48496 * 109.47068 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.46941 * 299.99925 * 24 22 20
28 28 C 1.37272 * 120.02738 * 359.56220 * 5 4 3
29 29 C 1.36325 * 120.22241 * 180.02562 * 2 1 3
30 30 H 1.09005 * 109.47561 * 269.98100 * 1 2 3
31 31 H 1.09002 * 109.47555 * 29.97663 * 1 2 3
32 32 H 1.09004 * 109.47119 * 149.98212 * 1 2 3
33 33 H 1.07998 * 119.77711 * 0.04363 * 3 2 1
34 34 H 1.08006 * 119.69912 * 179.90092 * 4 3 2
35 35 H 1.07997 * 125.08287 * 359.97438 * 6 5 4
36 36 H 0.97003 * 120.00102 * 359.97438 * 11 9 8
37 37 H 1.09001 * 109.46843 * 60.00279 * 14 12 11
38 38 H 1.08998 * 109.46646 * 179.97438 * 14 12 11
39 39 H 1.08992 * 109.47133 * 300.00613 * 14 12 11
40 40 H 1.08996 * 109.47452 * 305.00111 * 15 12 11
41 41 H 1.09001 * 109.46997 * 184.99684 * 15 12 11
42 42 H 1.09001 * 109.47502 * 60.00153 * 16 15 12
43 43 H 1.09001 * 109.47289 * 299.99950 * 16 15 12
44 44 H 1.09001 * 109.47002 * 299.99574 * 17 16 15
45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 15
46 46 H 1.09001 * 109.47289 * 299.99953 * 18 17 16
47 47 H 1.09004 * 109.47261 * 59.99697 * 18 17 16
48 48 H 0.97006 * 119.99755 * 359.97438 * 19 18 17
49 49 H 0.97000 * 120.00324 * 180.02562 * 23 22 20
50 50 H 1.08005 * 120.40219 * 359.95347 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2136 1.2132 0.0000
4 6 3.5638 1.2184 0.0075
5 7 4.2634 0.0459 0.0027
6 6 5.5962 -0.2366 -0.0052
7 7 5.7742 -1.5261 -0.0077
8 6 4.5787 -2.1509 -0.0010
9 6 4.3523 -3.5961 -0.0006
10 8 3.2162 -4.0344 0.0054
11 7 5.4011 -4.4426 -0.0068
12 6 5.1743 -5.8899 -0.0070
13 1 4.2895 -6.1191 0.5868
14 6 4.9637 -6.3730 -1.4434
15 6 6.3901 -6.5967 0.5957
16 6 6.5270 -6.2086 2.0693
17 6 7.7425 -6.9159 2.6721
18 6 7.8791 -6.5283 4.1459
19 7 9.0425 -7.2060 4.7233
20 6 9.3659 -7.0098 6.0393
21 1 8.7634 -6.3550 6.6517
22 6 10.4685 -7.6514 6.5863
23 7 11.2030 -8.4489 5.8400
24 14 10.9092 -7.3843 8.3818
25 1 9.7782 -7.8209 9.2393
26 1 12.1192 -8.1769 8.7177
27 1 11.1802 -5.9431 8.6158
28 6 3.5948 -1.1530 -0.0008
29 6 2.1932 -1.1780 -0.0005
30 1 -0.3634 -0.0003 1.0277
31 1 -0.3634 0.8902 -0.5135
32 1 -0.3633 -0.8899 -0.5141
33 1 1.6735 2.1484 0.0007
34 1 4.0953 2.1586 0.0058
35 1 6.3867 0.4993 -0.0097
36 1 6.3061 -4.0935 -0.0120
37 1 5.8485 -6.1438 -2.0372
38 1 4.7954 -7.4499 -1.4435
39 1 4.0976 -5.8694 -1.8727
40 1 7.2887 -6.2975 0.0562
41 1 6.2601 -7.6759 0.5147
42 1 5.6285 -6.5079 2.6088
43 1 6.6570 -5.1294 2.1503
44 1 7.6120 -7.9950 2.5912
45 1 8.6412 -6.6171 2.1327
46 1 8.0093 -5.4492 4.2272
47 1 6.9802 -6.8275 4.6850
48 1 9.5838 -7.7937 4.1732
49 1 11.9734 -8.8977 6.2223
50 1 1.6634 -2.1191 -0.0002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171611484.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:46:18
Heat of formation + Delta-G solvation = 13.737613 kcal
Electronic energy + Delta-G solvation = -28724.437084 eV
Core-core repulsion = 24751.216152 eV
Total energy + Delta-G solvation = -3973.220932 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-43.86585 -40.63872 -38.80544 -38.00605 -36.80915 -35.06583 -34.75289 -32.97754
-32.22972 -31.75721 -30.40855 -28.83146 -27.88798 -25.97562 -25.02826 -24.22571
-23.53828 -22.95888 -22.06664 -21.66135 -21.25788 -19.30688 -19.12603 -17.72516
-17.50326 -17.22794 -17.10495 -16.69203 -16.38805 -16.09234 -15.71739 -15.59104
-15.36774 -15.26092 -15.16854 -14.73446 -14.54959 -14.37977 -14.17715 -14.03963
-13.44142 -13.26517 -13.03585 -12.96988 -12.89630 -12.84522 -12.70766 -12.50331
-12.45955 -12.28855 -12.20707 -11.89537 -11.84029 -11.61950 -11.51141 -11.44456
-11.40647 -11.05015 -10.94519 -10.37987 -10.06975 -9.03106 -8.53637 -7.97069
-5.26931 -0.40091 0.07583 1.25877 1.45107 1.47870 1.49340 1.55671
2.24885 2.30145 2.54627 2.57261 3.35410 3.36266 3.41568 3.59509
3.68779 3.79542 3.80240 4.01732 4.04040 4.10933 4.12630 4.26764
4.34432 4.41071 4.52605 4.59365 4.63236 4.67648 4.76882 4.78559
4.83103 4.85514 4.92003 4.97257 4.97469 4.99774 5.11016 5.14986
5.23768 5.25532 5.31383 5.37944 5.43445 5.43906 5.50629 5.53123
5.61947 6.11187 6.25273 6.43347 6.73781 7.26126 7.30770 8.06675
8.31573 9.26259
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012156 B = 0.001886 C = 0.001737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2302.757746 B =14839.609800 C =16113.882175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.052 4.052
3 C -0.137 4.137
4 C 0.064 3.936
5 N -0.371 5.371
6 C 0.152 3.848
7 N -0.445 5.445
8 C -0.122 4.122
9 C 0.602 3.398
10 O -0.583 6.583
11 N -0.704 5.704
12 C 0.143 3.857
13 H 0.071 0.929
14 C -0.155 4.155
15 C -0.115 4.115
16 C -0.104 4.104
17 C -0.111 4.111
18 C 0.149 3.851
19 N -0.748 5.748
20 C -0.254 4.254
21 H 0.072 0.928
22 C -0.077 4.077
23 N -0.969 5.969
24 Si 0.979 3.021
25 H -0.278 1.278
26 H -0.291 1.291
27 H -0.277 1.277
28 C 0.079 3.921
29 C -0.127 4.127
30 H 0.086 0.914
31 H 0.098 0.902
32 H 0.068 0.932
33 H 0.195 0.805
34 H 0.219 0.781
35 H 0.260 0.740
36 H 0.410 0.590
37 H 0.065 0.935
38 H 0.082 0.918
39 H 0.042 0.958
40 H 0.079 0.921
41 H 0.093 0.907
42 H 0.057 0.943
43 H 0.056 0.944
44 H 0.062 0.938
45 H 0.061 0.939
46 H 0.013 0.987
47 H 0.014 0.986
48 H 0.375 0.625
49 H 0.253 0.747
50 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.776 24.798 -20.141 38.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.057 4.057
3 C -0.157 4.157
4 C -0.057 4.057
5 N -0.042 5.042
6 C -0.125 4.125
7 N -0.159 5.159
8 C -0.253 4.253
9 C 0.390 3.610
10 O -0.465 6.465
11 N -0.354 5.354
12 C 0.039 3.961
13 H 0.089 0.911
14 C -0.213 4.213
15 C -0.153 4.153
16 C -0.143 4.143
17 C -0.148 4.148
18 C 0.022 3.978
19 N -0.391 5.391
20 C -0.385 4.385
21 H 0.090 0.910
22 C -0.269 4.269
23 N -0.619 5.619
24 Si 0.806 3.194
25 H -0.204 1.204
26 H -0.217 1.217
27 H -0.203 1.203
28 C -0.035 4.035
29 C -0.147 4.147
30 H 0.105 0.895
31 H 0.117 0.883
32 H 0.087 0.913
33 H 0.212 0.788
34 H 0.236 0.764
35 H 0.276 0.724
36 H 0.246 0.754
37 H 0.084 0.916
38 H 0.101 0.899
39 H 0.061 0.939
40 H 0.098 0.902
41 H 0.112 0.888
42 H 0.075 0.925
43 H 0.074 0.926
44 H 0.080 0.920
45 H 0.080 0.920
46 H 0.031 0.969
47 H 0.032 0.968
48 H 0.206 0.794
49 H 0.062 0.938
50 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -21.664 24.151 -19.975 38.099
hybrid contribution 0.471 -0.018 0.920 1.033
sum -21.193 24.133 -19.055 37.345
Atomic orbital electron populations
1.20915 0.87856 1.04550 1.03867 1.20444 0.98671 0.91936 0.94605
1.21385 0.92469 1.00065 1.01758 1.22674 0.93689 0.88886 1.00420
1.43276 1.08631 1.06600 1.45725 1.25888 0.83262 0.93939 1.09442
1.69943 1.25645 1.05960 1.14343 1.20333 0.88865 0.93372 1.22771
1.16753 0.84582 0.84266 0.75366 1.90742 1.23378 1.78589 1.53759
1.45850 1.09296 1.06428 1.73815 1.21039 0.98906 0.78704 0.97426
0.91060 1.22104 1.01732 1.02181 0.95283 1.21838 0.97331 1.01554
0.94573 1.21406 0.97052 0.99921 0.95875 1.21582 0.98716 1.00546
0.93995 1.20831 0.88789 0.94558 0.93579 1.42604 1.31624 1.55515
1.09320 1.19624 1.08367 1.22167 0.88383 0.91010 1.25646 0.98368
1.00109 1.02777 1.69818 1.19982 1.34991 1.37104 0.85144 0.77128
0.77563 0.79515 1.20362 1.21681 1.20287 1.19428 0.93757 0.86027
1.04321 1.20574 0.89492 1.00613 1.03999 0.89525 0.88330 0.91330
0.78831 0.76443 0.72417 0.75358 0.91568 0.89905 0.93886 0.90199
0.88842 0.92457 0.92553 0.91960 0.92013 0.96880 0.96845 0.79354
0.93842 0.84572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.75 10.03 71.23 0.71 -0.03 16
2 C -0.05 -0.62 5.89 -19.79 -0.12 -0.74 16
3 C -0.14 -0.79 9.67 22.06 0.21 -0.57 16
4 C 0.06 0.42 10.95 83.22 0.91 1.33 16
5 N -0.37 -5.83 2.94 -350.65 -1.03 -6.86 16
6 C 0.15 2.45 12.73 179.97 2.29 4.74 16
7 N -0.44 -10.87 10.90 -187.25 -2.04 -12.91 16
8 C -0.12 -3.42 7.05 41.23 0.29 -3.13 16
9 C 0.60 18.42 7.74 86.33 0.67 19.09 16
10 O -0.58 -20.46 15.41 -4.56 -0.07 -20.53 16
11 N -0.70 -18.35 4.53 -446.83 -2.02 -20.38 16
12 C 0.14 3.40 2.57 44.99 0.12 3.51 16
13 H 0.07 1.96 7.57 -2.39 -0.02 1.94 16
14 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16
15 C -0.12 -2.55 4.75 30.59 0.15 -2.40 16
16 C -0.10 -2.92 5.10 30.60 0.16 -2.76 16
17 C -0.11 -3.78 5.33 30.60 0.16 -3.62 16
18 C 0.15 6.57 6.26 86.38 0.54 7.11 16
19 N -0.75 -41.07 5.60 -343.46 -1.92 -42.99 16
20 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16
21 H 0.07 4.13 7.83 -2.90 -0.02 4.10 16
22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16
23 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16
24 Si 0.98 47.72 29.55 68.60 2.03 49.75 16
25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16
26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
28 C 0.08 1.87 6.72 39.23 0.26 2.13 16
29 C -0.13 -2.61 9.38 22.30 0.21 -2.40 16
30 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16
31 H 0.10 0.14 8.10 -2.39 -0.02 0.12 16
32 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16
33 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16
34 H 0.22 -0.74 8.06 -2.91 -0.02 -0.76 16
35 H 0.26 1.43 8.06 -2.91 -0.02 1.41 16
36 H 0.41 10.07 8.30 -92.71 -0.77 9.30 16
37 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16
38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
43 H 0.06 1.64 7.75 -2.39 -0.02 1.63 16
44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
45 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16
46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
47 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16
48 H 0.37 21.47 7.67 -92.70 -0.71 20.76 16
49 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16
50 H 0.14 3.27 7.17 -2.91 -0.02 3.25 16
Total: -1.00 -83.94 416.99 3.24 -80.69
By element:
Atomic # 1 Polarization: 33.38 SS G_CDS: -0.53 Total: 32.85 kcal
Atomic # 6 Polarization: -7.21 SS G_CDS: 8.55 Total: 1.35 kcal
Atomic # 7 Polarization: -137.37 SS G_CDS: -6.73 Total: -144.10 kcal
Atomic # 8 Polarization: -20.46 SS G_CDS: -0.07 Total: -20.53 kcal
Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal
Total: -83.94 3.24 -80.69 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171611484.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.430 kcal
(2) G-P(sol) polarization free energy of solvation -83.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds