Wall clock time and date at job start Wed Apr 1 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40398 * 120.22048 * 2 1 4 4 C 1.35038 * 120.44148 * 179.63080 * 3 2 1 5 5 N 1.36530 * 120.59596 * 0.61272 * 4 3 2 6 6 C 1.36247 * 132.78452 * 179.24044 * 5 4 3 7 7 N 1.30186 * 109.81904 * 180.02562 * 6 5 4 8 8 C 1.34882 * 109.73669 * 359.97438 * 7 6 5 9 9 C 1.46290 * 126.49699 * 179.97438 * 8 7 6 10 10 O 1.21770 * 119.99849 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99920 * 0.02972 * 9 8 7 12 12 C 1.46499 * 119.99771 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 34.99730 * 12 11 9 14 14 C 1.53002 * 109.46799 * 274.99826 * 12 11 9 15 15 C 1.53000 * 109.46840 * 155.00060 * 12 11 9 16 16 C 1.53005 * 109.46867 * 294.99527 * 15 12 11 17 17 C 1.53008 * 109.46774 * 180.02562 * 16 15 12 18 18 C 1.53005 * 109.46774 * 180.02562 * 17 16 15 19 19 N 1.46492 * 109.46855 * 179.97438 * 18 17 16 20 20 C 1.36934 * 120.00299 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99658 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00555 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99515 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47454 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46994 * 119.99898 * 24 22 20 27 27 H 1.48498 * 109.47188 * 239.99605 * 24 22 20 28 28 C 1.37274 * 120.03144 * 359.56599 * 5 4 3 29 29 C 1.36329 * 120.22378 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46740 * 269.97468 * 1 2 3 31 31 H 1.09004 * 109.47108 * 29.97151 * 1 2 3 32 32 H 1.08999 * 109.46873 * 149.97335 * 1 2 3 33 33 H 1.07996 * 119.77827 * 0.05053 * 3 2 1 34 34 H 1.07999 * 119.69874 * 179.90942 * 4 3 2 35 35 H 1.08002 * 125.08638 * 359.97438 * 6 5 4 36 36 H 0.96998 * 119.99599 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47407 * 60.00500 * 14 12 11 38 38 H 1.09000 * 109.46986 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.47075 * 299.99543 * 14 12 11 40 40 H 1.08990 * 109.47170 * 54.99738 * 15 12 11 41 41 H 1.09001 * 109.46952 * 174.99815 * 15 12 11 42 42 H 1.09000 * 109.47443 * 300.00098 * 16 15 12 43 43 H 1.09001 * 109.47099 * 60.00379 * 16 15 12 44 44 H 1.09000 * 109.47044 * 300.00132 * 17 16 15 45 45 H 1.09001 * 109.47171 * 60.00211 * 17 16 15 46 46 H 1.09001 * 109.46908 * 300.00434 * 18 17 16 47 47 H 1.08996 * 109.46687 * 59.99974 * 18 17 16 48 48 H 0.96999 * 120.00405 * 0.02562 * 19 18 17 49 49 H 0.97006 * 119.99411 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.40129 * 359.95537 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5640 1.2184 0.0075 5 7 4.2635 0.0459 0.0026 6 6 5.5963 -0.2365 -0.0054 7 7 5.7742 -1.5262 -0.0078 8 6 4.5788 -2.1509 -0.0010 9 6 4.3523 -3.5962 -0.0016 10 8 3.2162 -4.0344 0.0045 11 7 5.4011 -4.4426 -0.0090 12 6 5.1743 -5.8899 -0.0090 13 1 4.2827 -6.1180 -0.5932 14 6 4.9801 -6.3757 1.4288 15 6 6.3832 -6.5955 -0.6268 16 6 6.5032 -6.2046 -2.1012 17 6 7.7118 -6.9108 -2.7192 18 6 7.8322 -6.5194 -4.1934 19 7 8.9897 -7.1949 -4.7850 20 6 9.2988 -6.9952 -6.1039 21 1 8.6890 -6.3400 -6.7082 22 6 10.3952 -7.6358 -6.6647 23 7 11.1380 -8.4347 -5.9283 24 14 10.8163 -7.3638 -8.4641 25 1 9.8329 -6.4285 -9.0668 26 1 12.1800 -6.7858 -8.5714 27 1 10.7707 -8.6614 -9.1848 28 6 3.5948 -1.1530 -0.0010 29 6 2.1932 -1.1780 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6736 2.1484 0.0008 34 1 4.0954 2.1586 0.0059 35 1 6.3868 0.4993 -0.0099 36 1 6.3061 -4.0934 -0.0142 37 1 4.1189 -5.8731 1.8689 38 1 4.8117 -7.4526 1.4288 39 1 5.8717 -6.1477 2.0129 40 1 7.2878 -6.2974 -0.0971 41 1 6.2541 -7.6749 -0.5465 42 1 5.5985 -6.5028 -2.6311 43 1 6.6323 -5.1253 -2.1816 44 1 8.6167 -6.6130 -2.1895 45 1 7.5823 -7.9901 -2.6389 46 1 6.9273 -6.8168 -4.7234 47 1 7.9619 -5.4401 -4.2733 48 1 9.5372 -7.7838 -4.2424 49 1 11.9040 -8.8827 -6.3203 50 1 1.6635 -2.1191 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171611485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:22 Heat of formation + Delta-G solvation = 35.800960 kcal Electronic energy + Delta-G solvation = -28725.473755 eV Core-core repulsion = 24753.209562 eV Total energy + Delta-G solvation = -3972.264193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.22248 -39.66909 -38.22456 -36.80834 -35.14783 -34.45093 -33.13168 -31.66395 -31.47330 -30.34283 -29.78904 -27.34808 -27.25335 -24.51844 -24.07444 -23.40893 -22.47025 -21.92613 -20.72792 -20.56765 -20.34399 -18.60510 -17.09660 -16.95661 -16.74958 -16.45175 -16.34063 -15.61461 -15.00448 -14.89326 -14.84580 -14.63531 -14.49459 -13.99916 -13.88461 -13.76441 -13.42060 -13.07642 -13.02597 -12.83384 -12.81958 -12.54806 -12.23984 -12.08517 -12.05102 -11.65545 -11.34884 -11.16576 -10.93437 -10.84332 -10.80416 -10.76300 -10.59529 -10.32551 -10.19553 -10.06062 -9.89600 -9.81420 -9.60197 -9.06548 -8.80032 -7.88580 -6.83280 -5.69648 -2.97449 0.19586 0.65258 2.04860 2.05899 2.80511 3.17825 3.45816 3.47734 3.52971 3.55653 3.88941 4.04823 4.14913 4.23660 4.38192 4.59900 4.61100 4.72498 4.93204 4.94534 5.05190 5.09169 5.12203 5.13299 5.25955 5.38584 5.49109 5.51580 5.54108 5.57689 5.62426 5.73473 5.82079 5.87413 5.88944 5.94498 6.04036 6.08105 6.08611 6.23393 6.37006 6.42313 6.48074 6.55190 6.58372 6.64629 6.99913 7.03782 7.21858 7.61379 7.77366 8.22995 8.49997 9.60592 10.20800 10.55571 11.53642 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.001889 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.772411 B =14816.407114 C =16092.430709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.055 3.945 5 N -0.368 5.368 6 C 0.146 3.854 7 N -0.415 5.415 8 C -0.067 4.067 9 C 0.608 3.392 10 O -0.550 6.550 11 N -0.707 5.707 12 C 0.142 3.858 13 H 0.089 0.911 14 C -0.162 4.162 15 C -0.126 4.126 16 C -0.114 4.114 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.083 3.917 29 C -0.076 4.076 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.218 0.782 36 H 0.408 0.592 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 21.583 20.230 36.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.067 4.067 5 N -0.039 5.039 6 C -0.131 4.131 7 N -0.130 5.130 8 C -0.201 4.201 9 C 0.395 3.605 10 O -0.428 6.428 11 N -0.358 5.358 12 C 0.037 3.963 13 H 0.107 0.893 14 C -0.221 4.221 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.213 4.213 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.030 4.030 29 C -0.095 4.095 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.235 0.765 36 H 0.244 0.756 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.216 0.784 49 H 0.063 0.937 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.911 20.949 20.052 35.752 hybrid contribution 0.435 0.739 -0.867 1.220 sum -20.476 21.688 19.185 35.464 Atomic orbital electron populations 1.20790 0.89607 1.03585 1.02953 1.19983 0.97302 0.92143 0.98913 1.20848 0.92318 0.99441 1.02443 1.21699 0.93075 0.88620 1.03280 1.43042 1.08629 1.06371 1.45887 1.25063 0.82413 0.94124 1.11487 1.70054 1.25593 1.04252 1.13069 1.20460 0.87614 0.93634 1.18353 1.16447 0.84822 0.83295 0.75892 1.90790 1.22285 1.77847 1.51870 1.45850 1.09487 1.06277 1.74172 1.21061 0.99652 0.78888 0.96661 0.89278 1.22176 1.02055 1.01417 0.96418 1.21931 0.97111 1.00815 0.96566 1.21523 0.98886 1.00686 0.94167 1.21721 0.97356 1.00224 0.96969 1.20653 0.90857 0.95275 0.90764 1.42400 1.30662 1.55199 1.09621 1.19313 1.08331 1.22133 0.86931 0.91200 1.24750 0.98341 1.00089 0.98160 1.69678 1.19588 1.34051 1.35078 0.86105 0.77831 0.77234 0.84999 1.20591 1.21905 1.21903 1.19272 0.93212 0.85154 1.05315 1.20657 0.89692 1.00017 0.99133 0.90500 0.90995 0.90689 0.83078 0.81177 0.76531 0.75640 0.92294 0.91538 0.92500 0.91301 0.90218 0.92059 0.91990 0.92121 0.92104 0.96594 0.96588 0.78354 0.93654 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.03 36.00 0.36 -0.11 16 2 C -0.08 -0.53 5.89 -104.50 -0.62 -1.14 16 3 C -0.13 -0.62 9.67 -39.91 -0.39 -1.00 16 4 C 0.05 0.28 10.95 -16.60 -0.18 0.10 16 5 N -0.37 -3.15 2.94 -62.18 -0.18 -3.34 16 6 C 0.15 1.27 12.73 -89.53 -1.14 0.13 16 7 N -0.42 -4.93 10.90 -10.53 -0.11 -5.04 16 8 C -0.07 -0.86 7.05 -82.58 -0.58 -1.45 16 9 C 0.61 8.46 7.74 -13.02 -0.10 8.36 16 10 O -0.55 -8.65 15.41 5.13 0.08 -8.57 16 11 N -0.71 -8.60 4.53 -55.23 -0.25 -8.85 16 12 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 13 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 14 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 15 C -0.13 -1.42 4.75 -26.73 -0.13 -1.55 16 16 C -0.11 -1.59 5.10 -26.72 -0.14 -1.73 16 17 C -0.12 -2.14 5.33 -26.72 -0.14 -2.28 16 18 C 0.15 3.31 6.26 -4.04 -0.03 3.28 16 19 N -0.73 -19.88 5.60 -59.91 -0.34 -20.21 16 20 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 23 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 24 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.08 0.94 6.72 -83.98 -0.56 0.37 16 29 C -0.08 -0.72 9.38 -39.54 -0.37 -1.10 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.19 8.10 -51.93 -0.42 -0.23 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 34 H 0.17 0.21 8.06 -52.49 -0.42 -0.21 16 35 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.41 4.71 8.30 -40.82 -0.34 4.37 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.89 7.75 -51.93 -0.40 0.48 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 49 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 50 H 0.16 1.61 7.17 -52.49 -0.38 1.24 16 LS Contribution 416.99 15.07 6.28 6.28 Total: -1.00 -36.83 416.99 -11.03 -47.86 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.13 Total: 7.98 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -4.08 Total: -5.71 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.16 Total: -66.00 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.83 -11.03 -47.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171611485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.657 kcal (2) G-P(sol) polarization free energy of solvation -36.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds