Wall clock time and date at job start Wed Apr 1 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40398 * 120.22048 * 2 1 4 4 C 1.35038 * 120.44148 * 179.63080 * 3 2 1 5 5 N 1.36530 * 120.59596 * 0.61272 * 4 3 2 6 6 C 1.36247 * 132.78452 * 179.24044 * 5 4 3 7 7 N 1.30186 * 109.81904 * 180.02562 * 6 5 4 8 8 C 1.34882 * 109.73669 * 359.97438 * 7 6 5 9 9 C 1.46290 * 126.49699 * 179.97438 * 8 7 6 10 10 O 1.21770 * 119.99849 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99920 * 0.02972 * 9 8 7 12 12 C 1.46499 * 119.99771 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 34.99730 * 12 11 9 14 14 C 1.53002 * 109.46799 * 274.99826 * 12 11 9 15 15 C 1.53000 * 109.46840 * 155.00060 * 12 11 9 16 16 C 1.53005 * 109.46867 * 294.99527 * 15 12 11 17 17 C 1.53008 * 109.46774 * 180.02562 * 16 15 12 18 18 C 1.53005 * 109.46774 * 180.02562 * 17 16 15 19 19 N 1.46492 * 109.46855 * 179.97438 * 18 17 16 20 20 C 1.36934 * 120.00299 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99658 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00555 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99515 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47454 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46994 * 119.99898 * 24 22 20 27 27 H 1.48498 * 109.47188 * 239.99605 * 24 22 20 28 28 C 1.37274 * 120.03144 * 359.56599 * 5 4 3 29 29 C 1.36329 * 120.22378 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46740 * 269.97468 * 1 2 3 31 31 H 1.09004 * 109.47108 * 29.97151 * 1 2 3 32 32 H 1.08999 * 109.46873 * 149.97335 * 1 2 3 33 33 H 1.07996 * 119.77827 * 0.05053 * 3 2 1 34 34 H 1.07999 * 119.69874 * 179.90942 * 4 3 2 35 35 H 1.08002 * 125.08638 * 359.97438 * 6 5 4 36 36 H 0.96998 * 119.99599 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47407 * 60.00500 * 14 12 11 38 38 H 1.09000 * 109.46986 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.47075 * 299.99543 * 14 12 11 40 40 H 1.08990 * 109.47170 * 54.99738 * 15 12 11 41 41 H 1.09001 * 109.46952 * 174.99815 * 15 12 11 42 42 H 1.09000 * 109.47443 * 300.00098 * 16 15 12 43 43 H 1.09001 * 109.47099 * 60.00379 * 16 15 12 44 44 H 1.09000 * 109.47044 * 300.00132 * 17 16 15 45 45 H 1.09001 * 109.47171 * 60.00211 * 17 16 15 46 46 H 1.09001 * 109.46908 * 300.00434 * 18 17 16 47 47 H 1.08996 * 109.46687 * 59.99974 * 18 17 16 48 48 H 0.96999 * 120.00405 * 0.02562 * 19 18 17 49 49 H 0.97006 * 119.99411 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.40129 * 359.95537 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5640 1.2184 0.0075 5 7 4.2635 0.0459 0.0026 6 6 5.5963 -0.2365 -0.0054 7 7 5.7742 -1.5262 -0.0078 8 6 4.5788 -2.1509 -0.0010 9 6 4.3523 -3.5962 -0.0016 10 8 3.2162 -4.0344 0.0045 11 7 5.4011 -4.4426 -0.0090 12 6 5.1743 -5.8899 -0.0090 13 1 4.2827 -6.1180 -0.5932 14 6 4.9801 -6.3757 1.4288 15 6 6.3832 -6.5955 -0.6268 16 6 6.5032 -6.2046 -2.1012 17 6 7.7118 -6.9108 -2.7192 18 6 7.8322 -6.5194 -4.1934 19 7 8.9897 -7.1949 -4.7850 20 6 9.2988 -6.9952 -6.1039 21 1 8.6890 -6.3400 -6.7082 22 6 10.3952 -7.6358 -6.6647 23 7 11.1380 -8.4347 -5.9283 24 14 10.8163 -7.3638 -8.4641 25 1 9.8329 -6.4285 -9.0668 26 1 12.1800 -6.7858 -8.5714 27 1 10.7707 -8.6614 -9.1848 28 6 3.5948 -1.1530 -0.0010 29 6 2.1932 -1.1780 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6736 2.1484 0.0008 34 1 4.0954 2.1586 0.0059 35 1 6.3868 0.4993 -0.0099 36 1 6.3061 -4.0934 -0.0142 37 1 4.1189 -5.8731 1.8689 38 1 4.8117 -7.4526 1.4288 39 1 5.8717 -6.1477 2.0129 40 1 7.2878 -6.2974 -0.0971 41 1 6.2541 -7.6749 -0.5465 42 1 5.5985 -6.5028 -2.6311 43 1 6.6323 -5.1253 -2.1816 44 1 8.6167 -6.6130 -2.1895 45 1 7.5823 -7.9901 -2.6389 46 1 6.9273 -6.8168 -4.7234 47 1 7.9619 -5.4401 -4.2733 48 1 9.5372 -7.7838 -4.2424 49 1 11.9040 -8.8827 -6.3203 50 1 1.6635 -2.1191 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171611485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:21 Heat of formation + Delta-G solvation = 13.489870 kcal Electronic energy + Delta-G solvation = -28726.441237 eV Core-core repulsion = 24753.209562 eV Total energy + Delta-G solvation = -3973.231675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.86523 -40.63875 -38.80465 -38.00650 -36.81260 -35.06617 -34.75539 -32.97968 -32.22892 -31.75866 -30.40847 -28.83360 -27.88760 -25.98084 -25.02903 -24.22639 -23.54064 -22.95896 -22.06734 -21.66162 -21.25781 -19.30680 -19.13203 -17.72630 -17.50337 -17.22468 -17.10648 -16.69671 -16.38774 -16.09621 -15.71603 -15.59279 -15.37985 -15.25590 -15.16485 -14.73818 -14.54868 -14.37752 -14.17683 -14.04194 -13.44254 -13.27273 -13.04168 -12.97118 -12.90906 -12.87371 -12.70741 -12.50450 -12.47100 -12.29162 -12.12242 -11.90524 -11.83937 -11.61966 -11.51349 -11.44348 -11.40572 -11.05012 -10.96680 -10.37911 -10.07000 -9.03397 -8.53594 -7.97885 -5.27510 -0.40087 0.07573 1.25860 1.45103 1.46864 1.47873 1.57257 2.24730 2.30314 2.54012 2.57262 3.35051 3.36259 3.41592 3.59448 3.68777 3.79559 3.80210 4.01698 4.03968 4.10881 4.12578 4.26733 4.34351 4.41057 4.52527 4.59352 4.63186 4.67692 4.76848 4.78581 4.83104 4.85519 4.91982 4.97234 4.97459 4.99780 5.11006 5.15045 5.23751 5.25529 5.31359 5.37941 5.43410 5.44217 5.50706 5.53120 5.61944 6.11210 6.24967 6.43352 6.73793 7.26127 7.30398 8.06254 8.31036 9.25945 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.001889 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.772411 B =14816.407114 C =16092.430709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.137 4.137 4 C 0.064 3.936 5 N -0.371 5.371 6 C 0.152 3.848 7 N -0.445 5.445 8 C -0.122 4.122 9 C 0.602 3.398 10 O -0.583 6.583 11 N -0.704 5.704 12 C 0.143 3.857 13 H 0.071 0.929 14 C -0.155 4.155 15 C -0.115 4.115 16 C -0.104 4.104 17 C -0.111 4.111 18 C 0.149 3.851 19 N -0.748 5.748 20 C -0.251 4.251 21 H 0.072 0.928 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.978 3.022 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.079 3.921 29 C -0.127 4.127 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.195 0.805 34 H 0.219 0.781 35 H 0.260 0.740 36 H 0.410 0.590 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.014 0.986 47 H 0.013 0.987 48 H 0.375 0.625 49 H 0.253 0.747 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.624 24.794 20.420 38.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.157 4.157 4 C -0.057 4.057 5 N -0.042 5.042 6 C -0.125 4.125 7 N -0.159 5.159 8 C -0.253 4.253 9 C 0.390 3.610 10 O -0.465 6.465 11 N -0.354 5.354 12 C 0.039 3.961 13 H 0.089 0.911 14 C -0.213 4.213 15 C -0.153 4.153 16 C -0.143 4.143 17 C -0.148 4.148 18 C 0.022 3.978 19 N -0.391 5.391 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.270 4.270 23 N -0.619 5.619 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.217 1.217 28 C -0.035 4.035 29 C -0.147 4.147 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.212 0.788 34 H 0.236 0.764 35 H 0.276 0.724 36 H 0.246 0.754 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.031 0.969 48 H 0.206 0.794 49 H 0.062 0.938 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.527 24.158 20.253 38.173 hybrid contribution 0.484 -0.037 -0.903 1.026 sum -21.042 24.121 19.350 37.403 Atomic orbital electron populations 1.20915 0.87856 1.04465 1.03949 1.20446 0.98672 0.91936 0.94605 1.21387 0.92471 1.00063 1.01756 1.22674 0.93686 0.88885 1.00422 1.43274 1.08631 1.06597 1.45719 1.25892 0.83261 0.93936 1.09448 1.69942 1.25651 1.05962 1.14337 1.20332 0.88865 0.93371 1.22766 1.16754 0.84581 0.84267 0.75368 1.90743 1.23377 1.78593 1.53760 1.45847 1.09297 1.06428 1.73811 1.21040 0.98960 0.78701 0.97374 0.91056 1.22105 1.01763 1.02172 0.95263 1.21839 0.97416 1.01555 0.94487 1.21407 0.97122 0.99922 0.95805 1.21586 0.98771 1.00544 0.93945 1.20832 0.88891 0.94584 0.93455 1.42618 1.31886 1.55463 1.09108 1.19697 1.08461 1.21950 0.88178 0.90973 1.25644 0.98398 1.00143 1.02782 1.69832 1.20049 1.35081 1.36977 0.85009 0.77605 0.77229 0.79518 1.19211 1.21621 1.21688 1.19430 0.93757 0.86029 1.04325 1.20574 0.89495 1.00612 1.04002 0.89249 0.88454 0.91478 0.78834 0.76441 0.72412 0.75357 0.93888 0.89906 0.91567 0.90202 0.88841 0.92449 0.92552 0.92020 0.91950 0.96816 0.96864 0.79352 0.93849 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.03 71.23 0.71 -0.03 16 2 C -0.05 -0.62 5.89 -19.78 -0.12 -0.74 16 3 C -0.14 -0.79 9.67 22.06 0.21 -0.57 16 4 C 0.06 0.42 10.95 83.22 0.91 1.33 16 5 N -0.37 -5.82 2.94 -350.64 -1.03 -6.85 16 6 C 0.15 2.44 12.73 179.97 2.29 4.73 16 7 N -0.44 -10.87 10.90 -187.24 -2.04 -12.91 16 8 C -0.12 -3.42 7.05 41.23 0.29 -3.12 16 9 C 0.60 18.41 7.74 86.34 0.67 19.08 16 10 O -0.58 -20.46 15.41 -4.57 -0.07 -20.53 16 11 N -0.70 -18.34 4.53 -446.82 -2.02 -20.36 16 12 C 0.14 3.39 2.57 44.99 0.12 3.51 16 13 H 0.07 1.95 7.58 -2.39 -0.02 1.94 16 14 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16 15 C -0.12 -2.54 4.75 30.60 0.15 -2.40 16 16 C -0.10 -2.92 5.10 30.60 0.16 -2.76 16 17 C -0.11 -3.78 5.33 30.60 0.16 -3.62 16 18 C 0.15 6.55 6.26 86.38 0.54 7.09 16 19 N -0.75 -41.03 5.60 -343.47 -1.92 -42.95 16 20 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 21 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 23 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 24 Si 0.98 47.78 29.55 68.60 2.03 49.80 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 C 0.08 1.86 6.72 39.23 0.26 2.13 16 29 C -0.13 -2.62 9.38 22.30 0.21 -2.41 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.18 8.10 -2.38 -0.02 0.16 16 32 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 34 H 0.22 -0.74 8.06 -2.91 -0.02 -0.77 16 35 H 0.26 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.41 10.06 8.30 -92.71 -0.77 9.29 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.37 21.45 7.67 -92.71 -0.71 20.74 16 49 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 50 H 0.14 3.27 7.17 -2.91 -0.02 3.25 16 Total: -1.00 -84.03 416.99 3.24 -80.78 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.53 Total: 32.56 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 8.55 Total: 1.45 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -6.73 Total: -144.07 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.07 Total: -20.53 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -84.03 3.24 -80.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171611485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.273 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds