Wall clock time and date at job start Wed Apr 1 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39059 * 119.35715 * 2 1 4 4 C 1.35702 * 122.67186 * 179.97438 * 3 2 1 5 5 C 1.41008 * 120.60074 * 359.97438 * 4 3 2 6 6 N 1.32145 * 134.71365 * 179.97438 * 5 4 3 7 7 N 1.39982 * 108.89447 * 180.02562 * 6 5 4 8 8 H 0.96993 * 125.06366 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87144 * 0.02562 * 7 6 5 10 10 C 1.37576 * 107.93248 * 0.02562 * 9 7 6 11 11 C 1.38465 * 119.35551 * 179.97438 * 2 1 3 12 12 C 1.47297 * 120.74019 * 359.74858 * 11 2 1 13 13 O 1.21630 * 119.99896 * 90.00085 * 12 11 2 14 14 N 1.34782 * 119.99937 * 269.99855 * 12 11 2 15 15 C 1.46496 * 119.99723 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.47730 * 34.99638 * 15 14 12 17 17 C 1.53003 * 109.47049 * 274.99396 * 15 14 12 18 18 C 1.52997 * 109.46971 * 155.00100 * 15 14 12 19 19 C 1.53003 * 109.47065 * 294.99433 * 18 15 14 20 20 C 1.53002 * 109.47276 * 180.02562 * 19 18 15 21 21 C 1.53003 * 109.47032 * 180.02562 * 20 19 18 22 22 N 1.46503 * 109.46916 * 179.97438 * 21 20 19 23 23 C 1.36932 * 119.99866 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.00022 * 359.97438 * 23 22 21 25 25 C 1.38809 * 120.00184 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00193 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99937 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46934 * 89.99725 * 27 25 23 29 29 H 1.48499 * 109.47233 * 209.99916 * 27 25 23 30 30 H 1.48501 * 109.47225 * 330.00145 * 27 25 23 31 31 H 1.08999 * 109.46918 * 270.02124 * 1 2 3 32 32 H 1.08998 * 109.46864 * 30.02145 * 1 2 3 33 33 H 1.09000 * 109.47279 * 150.02184 * 1 2 3 34 34 H 1.07998 * 118.66288 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.69886 * 180.02562 * 4 3 2 36 36 H 1.07998 * 126.03140 * 179.97438 * 9 7 6 37 37 H 0.96996 * 119.99857 * 359.97438 * 14 12 11 38 38 H 1.09005 * 109.46783 * 60.00412 * 17 15 14 39 39 H 1.09001 * 109.47208 * 180.02562 * 17 15 14 40 40 H 1.09000 * 109.47296 * 300.01004 * 17 15 14 41 41 H 1.08995 * 109.47642 * 54.99575 * 18 15 14 42 42 H 1.08995 * 109.47270 * 174.99700 * 18 15 14 43 43 H 1.09001 * 109.47283 * 300.00206 * 19 18 15 44 44 H 1.09004 * 109.47088 * 60.00016 * 19 18 15 45 45 H 1.09002 * 109.46854 * 299.99620 * 20 19 18 46 46 H 1.08995 * 109.47374 * 60.00074 * 20 19 18 47 47 H 1.09002 * 109.46583 * 299.99287 * 21 20 19 48 48 H 1.08995 * 109.47388 * 59.99584 * 21 20 19 49 49 H 0.97001 * 120.00013 * 359.97438 * 22 21 20 50 50 H 0.96998 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2120 0.0000 4 6 3.5435 1.2905 0.0005 5 6 4.3303 0.1203 0.0016 6 7 5.6283 -0.1273 0.0019 7 7 5.8255 -1.5131 0.0026 8 1 6.6899 -1.9530 0.0033 9 6 4.6398 -2.1427 0.0022 10 6 3.6519 -1.1853 0.0006 11 6 2.1858 -1.2069 0.0005 12 6 1.4515 -2.4837 0.0067 13 8 1.1443 -3.0136 -1.0442 14 7 1.1200 -3.0649 1.1767 15 6 0.3901 -4.3350 1.1827 16 1 0.7170 -4.9460 0.3414 17 6 -1.1104 -4.0616 1.0619 18 6 0.6694 -5.0774 2.4911 19 6 2.1493 -5.4608 2.5541 20 6 2.4284 -6.2037 3.8622 21 6 3.9085 -6.5865 3.9254 22 7 4.1759 -7.2973 5.1782 23 6 5.4409 -7.7412 5.4569 24 1 6.2414 -7.5676 4.7530 25 6 5.6945 -8.4143 6.6441 26 7 6.9103 -8.8414 6.9118 27 14 4.3097 -8.7152 7.8613 28 1 3.6547 -10.0123 7.5551 29 1 4.8615 -8.7524 9.2395 30 1 3.3122 -7.6201 7.7568 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6168 2.1281 0.0004 35 1 4.0235 2.2580 0.0009 36 1 4.4883 -3.2120 0.0021 37 1 1.3653 -2.6424 2.0147 38 1 -1.3094 -3.5327 0.1298 39 1 -1.6535 -5.0066 1.0668 40 1 -1.4373 -3.4505 1.9032 41 1 0.4251 -4.4318 3.3345 42 1 0.0584 -5.9790 2.5348 43 1 2.3936 -6.1065 1.7106 44 1 2.7603 -4.5591 2.5104 45 1 2.1841 -5.5583 4.7059 46 1 1.8175 -7.1053 3.9055 47 1 4.1532 -7.2318 3.0817 48 1 4.5192 -5.6847 3.8823 49 1 3.4568 -7.4536 5.8102 50 1 7.0875 -9.3114 7.7416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171618906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:27 Heat of formation + Delta-G solvation = 49.145841 kcal Electronic energy + Delta-G solvation = -29480.285070 eV Core-core repulsion = 25508.599554 eV Total energy + Delta-G solvation = -3971.685516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57126 -40.08710 -37.75830 -36.92580 -35.45250 -33.41905 -33.02373 -31.83636 -31.17952 -30.53923 -30.22742 -27.81094 -27.13289 -24.73679 -24.19469 -22.91047 -21.73982 -21.39539 -20.98509 -20.81404 -20.16337 -18.55869 -17.81756 -17.51228 -16.73137 -16.19607 -15.69783 -15.47923 -15.26407 -15.08453 -14.73072 -14.46089 -14.24370 -14.00750 -13.80418 -13.59083 -13.50097 -13.26114 -13.09253 -12.74799 -12.60635 -12.47944 -12.22298 -11.96397 -11.93624 -11.75890 -11.68984 -11.51355 -11.20309 -11.08999 -10.93143 -10.87641 -10.49837 -10.45974 -10.36488 -10.13313 -9.99117 -9.61580 -9.31943 -9.08316 -8.91518 -7.96667 -7.25039 -5.79143 -3.14523 0.10604 1.45699 1.95789 2.25997 2.41409 2.93920 3.35201 3.36289 3.37949 3.43069 3.86657 4.26252 4.41502 4.49556 4.56871 4.57441 4.76165 4.80097 4.87757 4.94076 5.05507 5.14224 5.16232 5.27436 5.28576 5.29270 5.31657 5.45607 5.51364 5.53729 5.57490 5.61852 5.70731 5.78116 5.83519 5.97108 5.99361 6.03439 6.04314 6.09688 6.13184 6.17759 6.28703 6.31082 6.41417 6.72416 6.73742 6.76882 7.21236 7.22714 7.93462 7.97169 8.40175 9.19541 9.92108 10.12261 11.39406 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.002449 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.921009 B =11432.143735 C =13220.903022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.080 4.080 4 C -0.080 4.080 5 C 0.100 3.900 6 N -0.296 5.296 7 N -0.423 5.423 8 H 0.448 0.552 9 C 0.091 3.909 10 C -0.184 4.184 11 C -0.057 4.057 12 C 0.569 3.431 13 O -0.532 6.532 14 N -0.714 5.714 15 C 0.139 3.861 16 H 0.090 0.910 17 C -0.163 4.163 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.130 4.130 21 C 0.157 3.843 22 N -0.758 5.758 23 C -0.245 4.245 24 H 0.089 0.911 25 C 0.002 3.998 26 N -0.935 5.935 27 Si 0.886 3.114 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.188 0.812 37 H 0.403 0.597 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.023 0.977 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.253 20.229 -15.749 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.102 4.102 4 C -0.100 4.100 5 C -0.055 4.055 6 N -0.124 5.124 7 N -0.124 5.124 8 H 0.293 0.707 9 C -0.066 4.066 10 C -0.194 4.194 11 C -0.062 4.062 12 C 0.355 3.645 13 O -0.408 6.408 14 N -0.365 5.365 15 C 0.035 3.965 16 H 0.108 0.892 17 C -0.222 4.222 18 C -0.165 4.165 19 C -0.153 4.153 20 C -0.168 4.168 21 C 0.030 3.970 22 N -0.404 5.404 23 C -0.375 4.375 24 H 0.107 0.893 25 C -0.193 4.193 26 N -0.583 5.583 27 Si 0.717 3.283 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.205 0.795 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.040 0.960 49 H 0.193 0.807 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.011 20.308 -16.529 29.697 hybrid contribution -0.922 -0.785 1.419 1.866 sum -14.933 19.523 -15.109 28.852 Atomic orbital electron populations 1.20867 0.90621 1.03410 1.02612 1.19583 0.95929 0.91290 1.00965 1.20367 0.93641 0.97271 0.98954 1.19915 0.92521 0.95490 1.02119 1.20850 0.90443 0.94411 0.99794 1.77710 1.15473 0.90166 1.29022 1.46351 1.08544 1.05271 1.52256 0.70686 1.22562 0.85170 0.99037 0.99790 1.20076 0.92056 0.92370 1.14917 1.19932 0.90206 0.92727 1.03385 1.18129 0.78289 0.84058 0.84065 1.90840 1.54474 1.64003 1.31502 1.46194 1.57819 1.24069 1.08436 1.21083 0.91506 0.84405 0.99476 0.89199 1.22180 0.95381 1.02363 1.02243 1.21941 0.97879 1.00604 0.96101 1.21517 0.95026 1.00385 0.98322 1.21784 0.98126 0.99994 0.96898 1.20616 0.92358 0.94775 0.89240 1.42738 1.08752 1.69239 1.19635 1.19066 0.86024 1.29175 1.03204 0.89345 1.24692 0.96210 1.00516 0.97903 1.69704 1.18902 1.43884 1.25827 0.86514 0.82267 0.78082 0.81472 1.21051 1.21705 1.20345 0.90810 0.90894 0.91341 0.84997 0.85028 0.79486 0.76216 0.92168 0.91478 0.92394 0.91290 0.90150 0.91782 0.91995 0.92166 0.92046 0.95755 0.95952 0.80710 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.58 36.01 0.34 -0.46 16 2 C -0.08 -0.66 5.91 -104.23 -0.62 -1.27 16 3 C -0.08 -0.61 9.45 -40.18 -0.38 -0.99 16 4 C -0.08 -0.71 10.02 -39.44 -0.40 -1.10 16 5 C 0.10 1.13 7.49 -83.07 -0.62 0.50 16 6 N -0.30 -3.45 12.71 33.24 0.42 -3.03 16 7 N -0.42 -3.79 7.20 30.75 0.22 -3.57 16 8 H 0.45 2.56 8.96 -182.69 -1.64 0.92 16 9 C 0.09 0.84 12.00 -16.74 -0.20 0.64 16 10 C -0.18 -2.00 6.35 -103.15 -0.65 -2.66 16 11 C -0.06 -0.59 5.80 -102.75 -0.60 -1.19 16 12 C 0.57 6.13 5.64 -12.57 -0.07 6.06 16 13 O -0.53 -7.58 16.75 5.25 0.09 -7.49 16 14 N -0.71 -6.04 4.53 -54.92 -0.25 -6.29 16 15 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 16 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 17 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 18 C -0.13 -1.05 4.75 -26.73 -0.13 -1.18 16 19 C -0.11 -1.21 5.10 -26.73 -0.14 -1.34 16 20 C -0.13 -1.82 5.33 -26.73 -0.14 -1.96 16 21 C 0.16 2.96 6.26 -4.04 -0.03 2.94 16 22 N -0.76 -18.15 5.41 -59.91 -0.32 -18.48 16 23 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 24 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 25 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 26 N -0.94 -29.53 13.97 55.49 0.78 -28.75 16 27 Si 0.89 22.13 27.74 -169.99 -4.71 17.41 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 7.02 -51.93 -0.36 0.21 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.40 2.88 8.59 -40.82 -0.35 2.53 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.36 8.37 5.53 -40.82 -0.23 8.15 16 50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 414.36 15.07 6.24 6.24 Total: -1.00 -36.78 414.36 -10.54 -47.32 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -9.30 Total: 5.72 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.70 Total: -9.08 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.85 Total: -60.12 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.78 -10.54 -47.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171618906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.465 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds