Wall clock time and date at job start Wed Apr 1 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39059 * 119.35715 * 2 1 4 4 C 1.35702 * 122.67186 * 179.97438 * 3 2 1 5 5 C 1.41008 * 120.60074 * 359.97438 * 4 3 2 6 6 N 1.32145 * 134.71365 * 179.97438 * 5 4 3 7 7 N 1.39982 * 108.89447 * 180.02562 * 6 5 4 8 8 H 0.96993 * 125.06366 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87144 * 0.02562 * 7 6 5 10 10 C 1.37576 * 107.93248 * 0.02562 * 9 7 6 11 11 C 1.38465 * 119.35551 * 179.97438 * 2 1 3 12 12 C 1.47297 * 120.74019 * 359.74858 * 11 2 1 13 13 O 1.21630 * 119.99896 * 90.00085 * 12 11 2 14 14 N 1.34782 * 119.99937 * 269.99855 * 12 11 2 15 15 C 1.46496 * 119.99723 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.47730 * 34.99638 * 15 14 12 17 17 C 1.53003 * 109.47049 * 274.99396 * 15 14 12 18 18 C 1.52997 * 109.46971 * 155.00100 * 15 14 12 19 19 C 1.53003 * 109.47065 * 294.99433 * 18 15 14 20 20 C 1.53002 * 109.47276 * 180.02562 * 19 18 15 21 21 C 1.53003 * 109.47032 * 180.02562 * 20 19 18 22 22 N 1.46503 * 109.46916 * 179.97438 * 21 20 19 23 23 C 1.36932 * 119.99866 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.00022 * 359.97438 * 23 22 21 25 25 C 1.38809 * 120.00184 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00193 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99937 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46934 * 89.99725 * 27 25 23 29 29 H 1.48499 * 109.47233 * 209.99916 * 27 25 23 30 30 H 1.48501 * 109.47225 * 330.00145 * 27 25 23 31 31 H 1.08999 * 109.46918 * 270.02124 * 1 2 3 32 32 H 1.08998 * 109.46864 * 30.02145 * 1 2 3 33 33 H 1.09000 * 109.47279 * 150.02184 * 1 2 3 34 34 H 1.07998 * 118.66288 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.69886 * 180.02562 * 4 3 2 36 36 H 1.07998 * 126.03140 * 179.97438 * 9 7 6 37 37 H 0.96996 * 119.99857 * 359.97438 * 14 12 11 38 38 H 1.09005 * 109.46783 * 60.00412 * 17 15 14 39 39 H 1.09001 * 109.47208 * 180.02562 * 17 15 14 40 40 H 1.09000 * 109.47296 * 300.01004 * 17 15 14 41 41 H 1.08995 * 109.47642 * 54.99575 * 18 15 14 42 42 H 1.08995 * 109.47270 * 174.99700 * 18 15 14 43 43 H 1.09001 * 109.47283 * 300.00206 * 19 18 15 44 44 H 1.09004 * 109.47088 * 60.00016 * 19 18 15 45 45 H 1.09002 * 109.46854 * 299.99620 * 20 19 18 46 46 H 1.08995 * 109.47374 * 60.00074 * 20 19 18 47 47 H 1.09002 * 109.46583 * 299.99287 * 21 20 19 48 48 H 1.08995 * 109.47388 * 59.99584 * 21 20 19 49 49 H 0.97001 * 120.00013 * 359.97438 * 22 21 20 50 50 H 0.96998 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2120 0.0000 4 6 3.5435 1.2905 0.0005 5 6 4.3303 0.1203 0.0016 6 7 5.6283 -0.1273 0.0019 7 7 5.8255 -1.5131 0.0026 8 1 6.6899 -1.9530 0.0033 9 6 4.6398 -2.1427 0.0022 10 6 3.6519 -1.1853 0.0006 11 6 2.1858 -1.2069 0.0005 12 6 1.4515 -2.4837 0.0067 13 8 1.1443 -3.0136 -1.0442 14 7 1.1200 -3.0649 1.1767 15 6 0.3901 -4.3350 1.1827 16 1 0.7170 -4.9460 0.3414 17 6 -1.1104 -4.0616 1.0619 18 6 0.6694 -5.0774 2.4911 19 6 2.1493 -5.4608 2.5541 20 6 2.4284 -6.2037 3.8622 21 6 3.9085 -6.5865 3.9254 22 7 4.1759 -7.2973 5.1782 23 6 5.4409 -7.7412 5.4569 24 1 6.2414 -7.5676 4.7530 25 6 5.6945 -8.4143 6.6441 26 7 6.9103 -8.8414 6.9118 27 14 4.3097 -8.7152 7.8613 28 1 3.6547 -10.0123 7.5551 29 1 4.8615 -8.7524 9.2395 30 1 3.3122 -7.6201 7.7568 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6168 2.1281 0.0004 35 1 4.0235 2.2580 0.0009 36 1 4.4883 -3.2120 0.0021 37 1 1.3653 -2.6424 2.0147 38 1 -1.3094 -3.5327 0.1298 39 1 -1.6535 -5.0066 1.0668 40 1 -1.4373 -3.4505 1.9032 41 1 0.4251 -4.4318 3.3345 42 1 0.0584 -5.9790 2.5348 43 1 2.3936 -6.1065 1.7106 44 1 2.7603 -4.5591 2.5104 45 1 2.1841 -5.5583 4.7059 46 1 1.8175 -7.1053 3.9055 47 1 4.1532 -7.2318 3.0817 48 1 4.5192 -5.6847 3.8823 49 1 3.4568 -7.4536 5.8102 50 1 7.0875 -9.3114 7.7416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171618906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:26 Heat of formation + Delta-G solvation = 24.189087 kcal Electronic energy + Delta-G solvation = -29481.367276 eV Core-core repulsion = 25508.599554 eV Total energy + Delta-G solvation = -3972.767722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.29335 -40.88301 -38.46647 -37.89257 -36.90190 -34.77803 -33.85130 -33.16151 -32.30279 -31.46769 -30.94128 -29.04178 -27.79123 -25.84978 -25.21995 -23.88511 -23.15209 -22.15031 -22.08796 -21.63085 -20.92468 -19.62738 -19.26412 -18.51147 -17.51796 -16.91185 -16.64576 -16.41378 -16.31004 -16.09087 -15.89822 -15.81284 -15.27106 -14.88307 -14.84406 -14.65064 -14.29945 -14.20948 -14.14450 -14.11317 -13.52319 -13.18336 -13.08457 -12.96131 -12.91737 -12.84373 -12.57598 -12.46950 -12.37859 -12.25747 -12.07705 -11.89298 -11.87445 -11.76540 -11.49681 -11.42009 -11.22253 -10.98252 -10.81828 -10.09049 -9.76980 -9.32119 -8.68644 -8.05335 -5.39374 -0.58161 0.76189 1.22132 1.36773 1.41325 1.47760 1.48882 1.73773 2.22109 2.47230 2.66483 3.17945 3.26033 3.49171 3.60936 3.82900 3.90904 3.94987 4.05419 4.10056 4.11011 4.30736 4.35967 4.37899 4.42853 4.54814 4.59435 4.66027 4.74612 4.79171 4.82424 4.88843 4.90754 4.95095 4.99679 5.04201 5.13477 5.17813 5.27074 5.30781 5.35952 5.38593 5.43478 5.51137 5.53103 5.59601 5.72499 5.78896 6.13112 6.19132 6.47783 6.50513 7.05999 7.17758 7.82601 8.02216 9.16308 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.002449 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.921009 B =11432.143735 C =13220.903022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.072 4.072 4 C -0.093 4.093 5 C 0.082 3.918 6 N -0.328 5.328 7 N -0.417 5.417 8 H 0.458 0.542 9 C 0.090 3.910 10 C -0.205 4.205 11 C -0.080 4.080 12 C 0.576 3.424 13 O -0.573 6.573 14 N -0.701 5.701 15 C 0.142 3.858 16 H 0.071 0.929 17 C -0.158 4.158 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.117 4.117 21 C 0.151 3.849 22 N -0.761 5.761 23 C -0.240 4.240 24 H 0.052 0.948 25 C -0.068 4.068 26 N -0.985 5.985 27 Si 0.961 3.039 28 H -0.277 1.277 29 H -0.295 1.295 30 H -0.248 1.248 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.206 0.794 37 H 0.412 0.588 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.367 0.633 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.515 21.533 -14.898 32.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.094 4.094 4 C -0.114 4.114 5 C -0.072 4.072 6 N -0.157 5.157 7 N -0.120 5.120 8 H 0.306 0.694 9 C -0.067 4.067 10 C -0.215 4.215 11 C -0.085 4.085 12 C 0.362 3.638 13 O -0.453 6.453 14 N -0.352 5.352 15 C 0.038 3.962 16 H 0.089 0.911 17 C -0.216 4.216 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.155 4.155 21 C 0.025 3.975 22 N -0.407 5.407 23 C -0.371 4.371 24 H 0.070 0.930 25 C -0.259 4.259 26 N -0.636 5.636 27 Si 0.787 3.213 28 H -0.203 1.203 29 H -0.222 1.222 30 H -0.172 1.172 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.222 0.778 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.200 0.800 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.297 21.642 -15.684 31.837 hybrid contribution 0.155 -1.164 1.062 1.583 sum -17.142 20.478 -14.622 30.447 Atomic orbital electron populations 1.20905 0.89143 1.03515 1.03666 1.19962 0.97067 0.91165 0.99323 1.20734 0.93334 0.98160 0.97163 1.20255 0.93111 0.95573 1.02432 1.21290 0.90509 0.95485 0.99952 1.77613 1.16107 0.91465 1.30519 1.46358 1.09160 1.04675 1.51814 0.69393 1.22886 0.85014 0.99734 0.99077 1.20352 0.92680 0.92727 1.15760 1.19998 0.90072 0.93151 1.05325 1.18174 0.77721 0.83995 0.83878 1.90815 1.56342 1.65165 1.32993 1.46127 1.56989 1.23840 1.08229 1.21056 0.92193 0.84023 0.98965 0.91098 1.22124 0.94476 1.03005 1.02002 1.21852 0.96040 1.01266 0.96280 1.21446 0.96923 0.99973 0.96272 1.21672 0.94179 1.00726 0.98913 1.20847 0.96018 0.93818 0.86835 1.42773 1.07058 1.69453 1.21448 1.19056 0.87208 1.28479 1.02377 0.92964 1.25610 0.99139 1.00820 1.00339 1.69898 1.21672 1.45402 1.26612 0.85324 0.79172 0.78949 0.77834 1.20254 1.22185 1.17210 0.89153 0.88849 0.93137 0.81525 0.83379 0.77769 0.75178 0.93719 0.90441 0.90974 0.89755 0.89129 0.92261 0.91766 0.91403 0.91515 0.96386 0.96298 0.79967 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.58 71.24 0.68 -0.63 16 2 C -0.07 -1.16 5.91 -19.61 -0.12 -1.27 16 3 C -0.07 -0.93 9.45 21.88 0.21 -0.73 16 4 C -0.09 -1.56 10.02 22.36 0.22 -1.33 16 5 C 0.08 1.84 7.49 42.11 0.32 2.16 16 6 N -0.33 -7.81 12.71 -48.75 -0.62 -8.43 16 7 N -0.42 -7.66 7.20 -56.62 -0.41 -8.06 16 8 H 0.46 5.46 8.96 -213.40 -1.91 3.54 16 9 C 0.09 1.68 12.00 84.17 1.01 2.69 16 10 C -0.20 -4.47 6.35 -18.91 -0.12 -4.59 16 11 C -0.08 -1.61 5.80 -18.65 -0.11 -1.72 16 12 C 0.58 12.16 5.64 86.63 0.49 12.65 16 13 O -0.57 -16.59 16.75 -4.13 -0.07 -16.66 16 14 N -0.70 -10.87 4.53 -445.92 -2.02 -12.89 16 15 C 0.14 2.14 2.57 44.99 0.12 2.25 16 16 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 17 C -0.16 -2.04 9.48 71.98 0.68 -1.36 16 18 C -0.12 -1.57 4.75 30.59 0.15 -1.42 16 19 C -0.11 -2.03 5.10 30.60 0.16 -1.87 16 20 C -0.12 -2.96 5.33 30.60 0.16 -2.79 16 21 C 0.15 5.52 6.26 86.38 0.54 6.06 16 22 N -0.76 -35.57 5.41 -343.45 -1.86 -37.43 16 23 C -0.24 -13.91 10.47 84.03 0.88 -13.03 16 24 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 25 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 26 N -0.99 -63.64 13.97 21.65 0.30 -63.34 16 27 Si 0.96 45.09 27.74 68.60 1.90 47.00 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 30 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.68 8.07 -2.39 -0.02 0.66 16 33 H 0.05 0.78 7.02 -2.39 -0.02 0.77 16 34 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.41 5.03 8.59 -92.71 -0.80 4.24 16 38 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.19 7.75 -2.38 -0.02 1.17 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 50 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -81.83 414.36 0.66 -81.17 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -2.31 Total: 27.13 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.73 Total: -8.49 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -4.60 Total: -130.15 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.07 Total: -16.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 47.00 kcal Total: -81.83 0.66 -81.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171618906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.356 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds