Wall clock time and date at job start Wed Apr 1 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39733 * 119.43364 * 2 1 4 4 C 1.38939 * 119.30006 * 179.97438 * 3 2 1 5 5 C 1.47222 * 120.86618 * 179.97438 * 4 3 2 6 6 O 1.21635 * 120.00694 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99587 * 0.02603 * 5 4 3 8 8 C 1.46501 * 120.00052 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47394 * 34.99591 * 8 7 5 10 10 C 1.53005 * 109.47186 * 275.00029 * 8 7 5 11 11 C 1.53000 * 109.47375 * 154.99972 * 8 7 5 12 12 C 1.52996 * 109.46970 * 294.99792 * 11 8 7 13 13 C 1.53004 * 109.47301 * 180.02562 * 12 11 8 14 14 C 1.52998 * 109.47244 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47182 * 180.02562 * 14 13 12 16 16 C 1.36937 * 120.00262 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99838 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47069 * 90.00073 * 20 18 16 22 22 H 1.48496 * 109.47260 * 210.00068 * 20 18 16 23 23 H 1.48497 * 109.47192 * 330.00287 * 20 18 16 24 24 C 1.46559 * 118.27827 * 0.02562 * 4 3 2 25 25 N 1.31973 * 132.72276 * 179.97438 * 24 4 3 26 26 C 1.33743 * 109.17162 * 180.02562 * 25 24 4 27 27 C 1.34959 * 108.60382 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.15033 * 359.97438 * 27 26 25 29 29 C 1.35121 * 119.42548 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47084 * 89.99835 * 1 2 3 31 31 H 1.08999 * 109.47668 * 209.99666 * 1 2 3 32 32 H 1.08997 * 109.47097 * 329.99785 * 1 2 3 33 33 H 1.08005 * 120.35034 * 0.02562 * 3 2 1 34 34 H 0.96996 * 120.00133 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47177 * 179.97438 * 10 8 7 36 36 H 1.08999 * 109.46596 * 300.00050 * 10 8 7 37 37 H 1.09004 * 109.46994 * 59.99762 * 10 8 7 38 38 H 1.08997 * 109.47320 * 55.00088 * 11 8 7 39 39 H 1.08999 * 109.46875 * 175.00071 * 11 8 7 40 40 H 1.08997 * 109.47341 * 300.00283 * 12 11 8 41 41 H 1.09003 * 109.47050 * 59.99890 * 12 11 8 42 42 H 1.09004 * 109.46926 * 299.99940 * 13 12 11 43 43 H 1.08999 * 109.46790 * 60.00128 * 13 12 11 44 44 H 1.09004 * 109.46801 * 299.99638 * 14 13 12 45 45 H 1.09003 * 109.47388 * 59.99620 * 14 13 12 46 46 H 0.97009 * 120.00079 * 359.97438 * 15 14 13 47 47 H 0.97004 * 119.99872 * 179.97438 * 19 18 16 48 48 H 1.08003 * 125.69820 * 179.97438 * 26 25 24 49 49 H 1.07999 * 126.42260 * 180.26559 * 27 26 25 50 50 H 1.07999 * 119.13899 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2170 0.0000 4 6 3.5830 1.2137 0.0005 5 6 4.3413 2.4757 0.0000 6 8 5.5574 2.4546 0.0000 7 7 3.6878 3.6544 -0.0005 8 6 4.4422 4.9102 -0.0016 9 1 5.3507 4.7878 -0.5913 10 6 4.8132 5.2836 1.4350 11 6 3.5840 6.0203 -0.6116 12 6 3.3172 5.7071 -2.0853 13 6 2.4595 6.8175 -2.6955 14 6 2.1922 6.5040 -4.1690 15 7 1.3715 7.5675 -4.7534 16 6 1.0035 7.5027 -6.0708 17 1 1.3179 6.6674 -6.6789 18 6 0.2254 8.5101 -6.6244 19 7 -0.1288 8.4476 -7.8906 20 14 -0.3203 9.9539 -5.5722 21 1 0.6944 11.0354 -5.6510 22 1 -1.6249 10.4621 -6.0672 23 1 -0.4642 9.5120 -4.1618 24 6 4.2743 -0.0786 0.0005 25 7 5.5516 -0.4107 0.0005 26 6 5.6587 -1.7439 -0.0001 27 6 4.4182 -2.2755 -0.0010 28 7 3.5312 -1.2313 -0.0004 29 6 2.1708 -1.1769 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6501 2.1503 0.0004 34 1 2.7179 3.6713 -0.0001 35 1 5.3749 6.2177 1.4342 36 1 3.9047 5.4060 2.0247 37 1 5.4246 4.4928 1.8696 38 1 2.6366 6.0829 -0.0762 39 1 4.1100 6.9716 -0.5318 40 1 4.2646 5.6445 -2.6207 41 1 2.7912 4.7558 -2.1651 42 1 1.5121 6.8805 -2.1602 43 1 2.9860 7.7686 -2.6157 44 1 3.1395 6.4407 -4.7046 45 1 1.6657 5.5529 -4.2484 46 1 1.0887 8.3176 -4.2072 47 1 -0.6728 9.1514 -8.2773 48 1 6.5834 -2.3018 -0.0006 49 1 4.1711 -3.3268 0.0024 50 1 1.6076 -2.0984 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171908470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:14 Heat of formation + Delta-G solvation = 53.632589 kcal Electronic energy + Delta-G solvation = -29070.433501 eV Core-core repulsion = 25098.942545 eV Total energy + Delta-G solvation = -3971.490956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.06685 -40.02925 -38.11551 -36.99783 -35.40461 -34.07253 -33.28347 -32.58782 -31.43336 -30.54138 -29.07254 -27.75449 -27.18284 -25.21194 -24.16708 -22.90103 -21.92323 -21.82390 -21.01294 -20.89277 -20.69115 -18.35845 -17.80602 -17.48729 -16.91519 -16.37568 -16.28454 -15.55590 -15.13983 -14.97957 -14.61509 -14.47104 -14.35469 -14.12641 -14.00526 -13.92358 -13.56751 -13.31015 -13.08002 -13.02504 -12.74145 -12.68880 -12.52774 -12.39033 -11.90156 -11.82610 -11.66124 -11.45399 -11.19879 -11.08287 -10.88431 -10.82595 -10.40853 -10.36183 -10.31914 -10.09832 -10.00154 -9.57689 -9.25496 -9.08025 -8.87646 -8.29546 -7.20886 -5.75392 -3.10553 -0.12269 0.84141 2.07681 2.34930 2.65704 2.89486 3.35047 3.37445 3.40401 3.45244 3.67848 3.88245 4.08629 4.23142 4.35913 4.51807 4.60154 4.78929 4.81277 4.88146 4.93279 4.98557 5.06145 5.08846 5.19430 5.21864 5.32964 5.33668 5.37970 5.49749 5.50111 5.56191 5.58638 5.60541 5.67269 5.85802 5.89212 5.94935 6.06254 6.08047 6.15725 6.19521 6.26603 6.35227 6.38416 6.59899 6.79136 6.82951 7.27420 7.61412 8.01865 8.04750 8.43997 9.23521 9.95973 10.16336 11.43203 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002097 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.269114 B =13348.605585 C =14434.966346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.087 4.087 5 C 0.562 3.438 6 O -0.502 6.502 7 N -0.719 5.719 8 C 0.143 3.857 9 H 0.092 0.908 10 C -0.163 4.163 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.129 4.129 14 C 0.156 3.844 15 N -0.758 5.758 16 C -0.243 4.243 17 H 0.089 0.911 18 C 0.001 3.999 19 N -0.936 5.936 20 Si 0.887 3.113 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.249 3.751 25 N -0.459 5.459 26 C 0.028 3.972 27 C -0.097 4.097 28 N -0.370 5.370 29 C 0.079 3.921 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.183 0.817 49 H 0.185 0.815 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -21.364 24.649 32.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.093 4.093 5 C 0.347 3.653 6 O -0.376 6.376 7 N -0.373 5.373 8 C 0.039 3.961 9 H 0.110 0.890 10 C -0.222 4.222 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.167 4.167 14 C 0.029 3.971 15 N -0.404 5.404 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.584 5.584 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.002 3.998 25 N -0.177 5.177 26 C -0.123 4.123 27 C -0.227 4.227 28 N -0.043 5.043 29 C -0.043 4.043 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.167 0.833 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.200 0.800 49 H 0.202 0.798 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.290 -20.998 24.407 32.628 hybrid contribution -1.683 0.295 0.542 1.792 sum 3.607 -20.702 24.948 32.619 Atomic orbital electron populations 1.20737 0.88296 1.03774 1.03519 1.19284 0.97698 0.91158 1.04315 1.21616 0.91999 0.98791 0.95107 1.20175 0.92205 0.90176 1.06772 1.17518 0.87425 0.82725 0.77599 1.90894 1.12678 1.86898 1.47126 1.45961 1.10130 1.05310 1.75905 1.21059 0.95813 0.82319 0.96875 0.89021 1.22183 1.01705 1.02028 0.96262 1.21944 1.00034 0.98004 0.96485 1.21524 1.00567 0.98969 0.94284 1.21779 0.99438 0.98392 0.97103 1.20632 0.94171 0.91798 0.90510 1.42742 1.62868 1.24716 1.10047 1.19089 1.26181 1.06815 0.85220 0.89292 1.24697 1.00314 0.98543 0.95884 1.69711 1.42078 1.34974 1.11615 0.86509 0.78185 0.83641 0.79964 1.21073 1.21746 1.20379 1.21522 0.86859 0.86200 1.05215 1.70826 1.13953 1.12910 1.20041 1.22720 0.97173 0.90420 1.01948 1.22708 0.89087 0.93100 1.17801 1.42873 1.05950 1.08836 1.46597 1.21476 0.81244 1.00455 1.01165 0.90130 0.90989 0.90360 0.83337 0.76776 0.91435 0.92528 0.92107 0.91373 0.90085 0.91666 0.91984 0.92208 0.92064 0.95665 0.95824 0.80745 0.93096 0.80010 0.79784 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.32 9.97 36.00 0.36 0.03 16 2 C -0.12 -0.71 5.82 -105.17 -0.61 -1.33 16 3 C -0.05 -0.37 9.26 -38.76 -0.36 -0.73 16 4 C -0.09 -0.97 6.06 -102.63 -0.62 -1.59 16 5 C 0.56 7.06 7.74 -12.61 -0.10 6.96 16 6 O -0.50 -8.41 15.86 5.25 0.08 -8.33 16 7 N -0.72 -6.70 4.48 -54.94 -0.25 -6.95 16 8 C 0.14 1.37 2.57 -67.93 -0.17 1.20 16 9 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 10 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 11 C -0.13 -1.13 4.75 -26.73 -0.13 -1.26 16 12 C -0.12 -1.32 5.10 -26.73 -0.14 -1.46 16 13 C -0.13 -1.87 5.33 -26.73 -0.14 -2.01 16 14 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 15 N -0.76 -18.45 5.41 -59.91 -0.32 -18.78 16 16 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 19 N -0.94 -29.79 13.97 55.49 0.78 -29.01 16 20 Si 0.89 22.28 27.73 -169.99 -4.71 17.56 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 24 C 0.25 3.19 7.67 -154.14 -1.18 2.01 16 25 N -0.46 -6.66 10.70 -11.32 -0.12 -6.78 16 26 C 0.03 0.28 11.83 -17.88 -0.21 0.07 16 27 C -0.10 -0.78 11.76 -16.40 -0.19 -0.98 16 28 N -0.37 -3.50 2.94 -61.09 -0.18 -3.68 16 29 C 0.08 0.50 10.48 -16.74 -0.18 0.33 16 30 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.07 0.12 8.05 -51.93 -0.42 -0.29 16 32 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 33 H 0.15 0.64 6.48 -52.48 -0.34 0.30 16 34 H 0.40 2.62 6.70 -40.82 -0.27 2.35 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.18 1.26 8.06 -52.48 -0.42 0.83 16 49 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.16 0.46 8.04 -52.49 -0.42 0.04 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -39.31 412.14 -10.10 -49.41 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.98 Total: 4.42 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.60 Total: -4.07 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.10 Total: -65.20 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -39.31 -10.10 -49.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171908470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.040 kcal (2) G-P(sol) polarization free energy of solvation -39.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds