Wall clock time and date at job start Wed Apr 1 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39733 * 119.43364 * 2 1 4 4 C 1.38939 * 119.30006 * 179.97438 * 3 2 1 5 5 C 1.47222 * 120.86618 * 179.97438 * 4 3 2 6 6 O 1.21635 * 120.00694 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99587 * 0.02603 * 5 4 3 8 8 C 1.46501 * 120.00052 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47394 * 34.99591 * 8 7 5 10 10 C 1.53005 * 109.47186 * 275.00029 * 8 7 5 11 11 C 1.53000 * 109.47375 * 154.99972 * 8 7 5 12 12 C 1.52996 * 109.46970 * 294.99792 * 11 8 7 13 13 C 1.53004 * 109.47301 * 180.02562 * 12 11 8 14 14 C 1.52998 * 109.47244 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47182 * 180.02562 * 14 13 12 16 16 C 1.36937 * 120.00262 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99838 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47069 * 90.00073 * 20 18 16 22 22 H 1.48496 * 109.47260 * 210.00068 * 20 18 16 23 23 H 1.48497 * 109.47192 * 330.00287 * 20 18 16 24 24 C 1.46559 * 118.27827 * 0.02562 * 4 3 2 25 25 N 1.31973 * 132.72276 * 179.97438 * 24 4 3 26 26 C 1.33743 * 109.17162 * 180.02562 * 25 24 4 27 27 C 1.34959 * 108.60382 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.15033 * 359.97438 * 27 26 25 29 29 C 1.35121 * 119.42548 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47084 * 89.99835 * 1 2 3 31 31 H 1.08999 * 109.47668 * 209.99666 * 1 2 3 32 32 H 1.08997 * 109.47097 * 329.99785 * 1 2 3 33 33 H 1.08005 * 120.35034 * 0.02562 * 3 2 1 34 34 H 0.96996 * 120.00133 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47177 * 179.97438 * 10 8 7 36 36 H 1.08999 * 109.46596 * 300.00050 * 10 8 7 37 37 H 1.09004 * 109.46994 * 59.99762 * 10 8 7 38 38 H 1.08997 * 109.47320 * 55.00088 * 11 8 7 39 39 H 1.08999 * 109.46875 * 175.00071 * 11 8 7 40 40 H 1.08997 * 109.47341 * 300.00283 * 12 11 8 41 41 H 1.09003 * 109.47050 * 59.99890 * 12 11 8 42 42 H 1.09004 * 109.46926 * 299.99940 * 13 12 11 43 43 H 1.08999 * 109.46790 * 60.00128 * 13 12 11 44 44 H 1.09004 * 109.46801 * 299.99638 * 14 13 12 45 45 H 1.09003 * 109.47388 * 59.99620 * 14 13 12 46 46 H 0.97009 * 120.00079 * 359.97438 * 15 14 13 47 47 H 0.97004 * 119.99872 * 179.97438 * 19 18 16 48 48 H 1.08003 * 125.69820 * 179.97438 * 26 25 24 49 49 H 1.07999 * 126.42260 * 180.26559 * 27 26 25 50 50 H 1.07999 * 119.13899 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2170 0.0000 4 6 3.5830 1.2137 0.0005 5 6 4.3413 2.4757 0.0000 6 8 5.5574 2.4546 0.0000 7 7 3.6878 3.6544 -0.0005 8 6 4.4422 4.9102 -0.0016 9 1 5.3507 4.7878 -0.5913 10 6 4.8132 5.2836 1.4350 11 6 3.5840 6.0203 -0.6116 12 6 3.3172 5.7071 -2.0853 13 6 2.4595 6.8175 -2.6955 14 6 2.1922 6.5040 -4.1690 15 7 1.3715 7.5675 -4.7534 16 6 1.0035 7.5027 -6.0708 17 1 1.3179 6.6674 -6.6789 18 6 0.2254 8.5101 -6.6244 19 7 -0.1288 8.4476 -7.8906 20 14 -0.3203 9.9539 -5.5722 21 1 0.6944 11.0354 -5.6510 22 1 -1.6249 10.4621 -6.0672 23 1 -0.4642 9.5120 -4.1618 24 6 4.2743 -0.0786 0.0005 25 7 5.5516 -0.4107 0.0005 26 6 5.6587 -1.7439 -0.0001 27 6 4.4182 -2.2755 -0.0010 28 7 3.5312 -1.2313 -0.0004 29 6 2.1708 -1.1769 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6501 2.1503 0.0004 34 1 2.7179 3.6713 -0.0001 35 1 5.3749 6.2177 1.4342 36 1 3.9047 5.4060 2.0247 37 1 5.4246 4.4928 1.8696 38 1 2.6366 6.0829 -0.0762 39 1 4.1100 6.9716 -0.5318 40 1 4.2646 5.6445 -2.6207 41 1 2.7912 4.7558 -2.1651 42 1 1.5121 6.8805 -2.1602 43 1 2.9860 7.7686 -2.6157 44 1 3.1395 6.4407 -4.7046 45 1 1.6657 5.5529 -4.2484 46 1 1.0887 8.3176 -4.2072 47 1 -0.6728 9.1514 -8.2773 48 1 6.5834 -2.3018 -0.0006 49 1 4.1711 -3.3268 0.0024 50 1 1.6076 -2.0984 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171908470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:13 Heat of formation + Delta-G solvation = 27.346110 kcal Electronic energy + Delta-G solvation = -29071.573368 eV Core-core repulsion = 25098.942545 eV Total energy + Delta-G solvation = -3972.630823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.72787 -40.89297 -38.69797 -38.05744 -36.92160 -34.92083 -34.61030 -33.41050 -32.89167 -31.66731 -29.75190 -29.03995 -27.59193 -26.03748 -25.54466 -23.80234 -23.25211 -22.52064 -22.18377 -21.81465 -21.55190 -19.62151 -18.99147 -18.49357 -17.60680 -17.13698 -16.99660 -16.62855 -16.30815 -16.03798 -15.85373 -15.80649 -15.23626 -14.97443 -14.87524 -14.64974 -14.55325 -14.31611 -14.26302 -14.14148 -13.55751 -13.52074 -13.21137 -13.07697 -12.95368 -12.92358 -12.82218 -12.47071 -12.44110 -12.25140 -12.07264 -11.88232 -11.81195 -11.74369 -11.50623 -11.42798 -11.17385 -10.97014 -10.87736 -10.11798 -9.70460 -9.30922 -8.93608 -8.03663 -5.38073 -0.74221 0.23831 1.38175 1.43419 1.47374 1.50920 1.66481 1.91172 2.16354 2.48958 2.58009 3.07467 3.27284 3.36349 3.49317 3.56073 3.76677 3.82219 3.93203 4.03548 4.09467 4.28105 4.35114 4.40224 4.41803 4.44614 4.55488 4.58908 4.65362 4.66988 4.76952 4.78521 4.88722 4.91699 4.92368 4.99127 5.03678 5.12007 5.16660 5.23828 5.26669 5.32980 5.43312 5.48060 5.51875 5.58777 5.60317 5.74082 6.01970 6.20618 6.53084 6.92004 7.07345 7.23140 7.83319 8.04292 9.18023 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002097 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.269114 B =13348.605585 C =14434.966346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.127 4.127 3 C -0.023 4.023 4 C -0.136 4.136 5 C 0.559 3.441 6 O -0.561 6.561 7 N -0.704 5.704 8 C 0.144 3.856 9 H 0.062 0.938 10 C -0.157 4.157 11 C -0.114 4.114 12 C -0.110 4.110 13 C -0.115 4.115 14 C 0.149 3.851 15 N -0.760 5.760 16 C -0.241 4.241 17 H 0.050 0.950 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.963 3.037 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.245 1.245 24 C 0.218 3.782 25 N -0.524 5.524 26 C -0.004 4.004 27 C -0.081 4.081 28 N -0.375 5.375 29 C 0.082 3.918 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.021 0.979 46 H 0.368 0.632 47 H 0.259 0.741 48 H 0.200 0.800 49 H 0.229 0.771 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -21.401 27.430 34.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.130 4.130 3 C -0.046 4.046 4 C -0.143 4.143 5 C 0.347 3.653 6 O -0.440 6.440 7 N -0.358 5.358 8 C 0.040 3.960 9 H 0.080 0.920 10 C -0.215 4.215 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.152 4.152 14 C 0.023 3.977 15 N -0.406 5.406 16 C -0.372 4.372 17 H 0.068 0.932 18 C -0.260 4.260 19 N -0.636 5.636 20 Si 0.789 3.211 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.169 1.169 24 C -0.029 4.029 25 N -0.243 5.243 26 C -0.152 4.152 27 C -0.210 4.210 28 N -0.047 5.047 29 C -0.040 4.040 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.196 0.804 34 H 0.251 0.749 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.217 0.783 49 H 0.246 0.754 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.202 -21.054 27.234 34.493 hybrid contribution -0.766 0.145 -0.401 0.877 sum 1.436 -20.909 26.832 34.047 Atomic orbital electron populations 1.20818 0.85635 1.05350 1.04149 1.19728 0.99345 0.90412 1.03529 1.22067 0.90470 1.00902 0.91199 1.20146 0.93606 0.89058 1.11441 1.17880 0.86949 0.83963 0.76539 1.90849 1.15143 1.87731 1.50240 1.45835 1.10823 1.04458 1.74663 1.21013 0.95118 0.82655 0.97235 0.91958 1.22116 1.02312 1.01594 0.95465 1.21845 1.01108 0.97745 0.94432 1.21454 0.99316 0.98206 0.95823 1.21656 1.00782 0.99461 0.93348 1.20851 0.92598 0.90506 0.93732 1.42741 1.63287 1.26142 1.08409 1.19055 1.25603 1.05514 0.87070 0.93196 1.25645 1.00834 1.02159 0.97394 1.69911 1.43343 1.36333 1.14018 0.85290 0.77259 0.79061 0.79451 1.20429 1.22040 1.16940 1.21799 0.87098 0.87827 1.06223 1.70709 1.15973 1.15265 1.22391 1.23204 0.99274 0.89595 1.03161 1.23360 0.88065 0.94452 1.15140 1.43117 1.07114 1.08115 1.46334 1.22309 0.80087 1.02558 0.99058 0.89781 0.89069 0.89295 0.80415 0.74949 0.90281 0.90560 0.94622 0.88833 0.89086 0.93175 0.91601 0.90591 0.91572 0.96993 0.96074 0.79848 0.93251 0.78315 0.75414 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 9.97 71.24 0.71 0.53 16 2 C -0.13 -1.10 5.82 -20.22 -0.12 -1.22 16 3 C -0.02 -0.28 9.26 22.80 0.21 -0.07 16 4 C -0.14 -3.12 6.06 -18.58 -0.11 -3.24 16 5 C 0.56 14.91 7.74 86.60 0.67 15.58 16 6 O -0.56 -20.76 15.86 -4.14 -0.07 -20.83 16 7 N -0.70 -12.75 4.48 -445.98 -2.00 -14.75 16 8 C 0.14 2.67 2.57 44.99 0.12 2.79 16 9 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 10 C -0.16 -2.58 9.48 71.98 0.68 -1.90 16 11 C -0.11 -1.70 4.75 30.59 0.15 -1.56 16 12 C -0.11 -2.31 5.10 30.59 0.16 -2.15 16 13 C -0.11 -2.99 5.33 30.60 0.16 -2.83 16 14 C 0.15 5.68 6.26 86.38 0.54 6.22 16 15 N -0.76 -36.00 5.41 -343.46 -1.86 -37.86 16 16 C -0.24 -14.18 10.47 84.03 0.88 -13.29 16 17 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 19 N -0.99 -64.04 13.97 21.65 0.30 -63.74 16 20 Si 0.96 45.16 27.73 68.60 1.90 47.06 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 24 C 0.22 5.87 7.67 135.77 1.04 6.91 16 25 N -0.52 -16.57 10.70 -189.72 -2.03 -18.60 16 26 C 0.00 -0.09 11.83 83.65 0.99 0.90 16 27 C -0.08 -1.22 11.76 83.13 0.98 -0.24 16 28 N -0.37 -6.72 2.94 -347.20 -1.02 -7.74 16 29 C 0.08 0.80 10.48 83.30 0.87 1.67 16 30 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.09 -0.14 8.05 -2.39 -0.02 -0.16 16 32 H 0.09 0.02 8.08 -2.39 -0.02 0.00 16 33 H 0.18 0.94 6.48 -2.91 -0.02 0.92 16 34 H 0.41 4.50 6.70 -92.71 -0.62 3.88 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.37 16.17 5.53 -92.70 -0.51 15.65 16 47 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 48 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 49 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 50 H 0.21 0.16 8.04 -2.91 -0.02 0.13 16 Total: -1.00 -93.33 412.14 3.38 -89.94 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.24 Total: 22.09 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 8.39 Total: 4.43 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -6.60 Total: -142.70 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.07 Total: -20.83 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Total: -93.33 3.38 -89.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171908470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.291 kcal (2) G-P(sol) polarization free energy of solvation -93.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds