Wall clock time and date at job start Wed Apr 1 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35832 * 118.70372 * 2 1 4 4 C 1.40839 * 120.55694 * 179.97438 * 3 2 1 5 5 C 1.38425 * 134.89281 * 180.02562 * 4 3 2 6 6 N 1.33897 * 107.84075 * 180.02562 * 5 4 3 7 7 H 0.97001 * 125.01575 * 179.97438 * 6 5 4 8 8 N 1.39974 * 109.96101 * 0.26375 * 6 5 4 9 9 C 1.31479 * 109.01734 * 359.54180 * 8 6 5 10 10 C 1.46669 * 134.99187 * 180.02562 * 9 8 6 11 11 C 1.47167 * 120.72838 * 0.42287 * 10 9 8 12 12 O 1.21647 * 119.99417 * 359.95474 * 11 10 9 13 13 N 1.34772 * 120.00585 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00233 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47305 * 35.00068 * 14 13 11 16 16 C 1.52999 * 109.47287 * 274.99795 * 14 13 11 17 17 C 1.53002 * 109.47115 * 155.00119 * 14 13 11 18 18 C 1.53003 * 109.46947 * 295.00097 * 17 14 13 19 19 C 1.53002 * 109.46947 * 179.97438 * 18 17 14 20 20 C 1.53003 * 109.46947 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.46968 * 179.97438 * 20 19 18 22 22 C 1.36932 * 119.99711 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00276 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99577 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99676 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00162 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47556 * 89.99667 * 26 24 22 28 28 H 1.48506 * 109.47330 * 209.99492 * 26 24 22 29 29 H 1.48494 * 109.47490 * 329.99451 * 26 24 22 30 30 C 1.38590 * 118.55171 * 180.38132 * 10 9 8 31 31 H 1.09001 * 109.46765 * 89.99901 * 1 2 3 32 32 H 1.08994 * 109.47562 * 209.99724 * 1 2 3 33 33 H 1.09000 * 109.47387 * 330.00381 * 1 2 3 34 34 H 1.08004 * 119.71976 * 0.02562 * 3 2 1 35 35 H 1.07994 * 126.07982 * 359.97438 * 5 4 3 36 36 H 0.97006 * 119.99435 * 0.02562 * 13 11 10 37 37 H 1.09006 * 109.46744 * 60.00042 * 16 14 13 38 38 H 1.09000 * 109.47598 * 180.02562 * 16 14 13 39 39 H 1.09001 * 109.47593 * 300.00497 * 16 14 13 40 40 H 1.09005 * 109.47217 * 54.99613 * 17 14 13 41 41 H 1.08994 * 109.47181 * 174.99812 * 17 14 13 42 42 H 1.08993 * 109.47157 * 299.99929 * 18 17 14 43 43 H 1.09003 * 109.46857 * 59.99917 * 18 17 14 44 44 H 1.09005 * 109.47217 * 299.99515 * 19 18 17 45 45 H 1.08994 * 109.47181 * 59.99715 * 19 18 17 46 46 H 1.08993 * 109.47157 * 299.99929 * 20 19 18 47 47 H 1.09003 * 109.46857 * 59.99917 * 20 19 18 48 48 H 0.96997 * 119.99674 * 359.97438 * 21 20 19 49 49 H 0.97007 * 120.00250 * 180.02562 * 25 24 22 50 50 H 1.07998 * 119.32044 * 180.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1914 0.0000 4 6 3.5670 1.2369 0.0005 5 6 4.5118 2.2487 0.0011 6 7 5.7233 1.6786 0.0009 7 1 6.5652 2.1604 0.0008 8 7 5.5956 0.2847 -0.0059 9 6 4.3186 -0.0285 0.0000 10 6 3.5586 -1.2829 -0.0018 11 6 4.2509 -2.5816 -0.0031 12 8 5.4667 -2.6226 -0.0034 13 7 3.5380 -3.7253 -0.0042 14 6 4.2272 -5.0180 -0.0060 15 1 5.1411 -4.9434 0.5833 16 6 4.5776 -5.4073 -1.4435 17 6 3.3137 -6.0839 0.6026 18 6 3.0642 -5.7602 2.0771 19 6 2.1501 -6.8256 2.6855 20 6 1.9011 -6.5023 4.1601 21 7 1.0254 -7.5222 4.7426 22 6 0.6625 -7.4414 6.0605 23 1 1.0215 -6.6256 6.6704 24 6 -0.1677 -8.4075 6.6122 25 7 -0.5161 -8.3301 7.8790 26 14 -0.7892 -9.8180 5.5571 27 1 0.1669 -10.9518 5.6331 28 1 -2.1187 -10.2577 6.0515 29 1 -0.9100 -9.3661 4.1477 30 6 2.1742 -1.2186 -0.0015 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.5938 2.1115 0.0004 35 1 4.3079 3.3092 0.0009 36 1 2.5685 -3.6925 -0.0046 37 1 5.2284 -4.6479 -1.8771 38 1 5.0900 -6.3693 -1.4449 39 1 3.6637 -5.4819 -2.0329 40 1 2.3639 -6.0969 0.0678 41 1 3.7902 -7.0607 0.5207 42 1 4.0138 -5.7471 2.6119 43 1 2.5876 -4.7833 2.1589 44 1 1.2004 -6.8382 2.1506 45 1 2.6262 -7.8026 2.6035 46 1 2.8508 -6.4900 4.6947 47 1 1.4251 -5.5251 4.2424 48 1 0.7027 -8.2546 4.1946 49 1 -1.0960 -9.0054 8.2648 50 1 1.6022 -2.1346 -0.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175703488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:52 Heat of formation + Delta-G solvation = 51.604776 kcal Electronic energy + Delta-G solvation = -28943.221012 eV Core-core repulsion = 24971.642124 eV Total energy + Delta-G solvation = -3971.578888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61303 -39.87740 -37.80442 -36.88123 -35.35184 -33.34487 -32.88015 -31.91729 -31.26928 -30.72885 -29.83812 -27.70953 -26.82915 -24.99144 -24.17039 -22.77986 -21.60849 -21.44902 -20.86154 -20.64489 -20.18991 -18.56067 -17.55656 -17.44831 -17.01457 -16.33802 -15.43130 -15.27814 -15.05785 -14.84680 -14.60696 -14.54147 -14.26652 -14.05616 -13.80964 -13.54427 -13.49575 -13.22704 -12.96737 -12.68274 -12.53315 -12.32822 -12.30220 -12.01674 -11.85541 -11.66812 -11.53978 -11.40566 -11.09522 -10.86376 -10.84752 -10.77870 -10.53855 -10.35816 -10.28426 -10.06524 -9.85035 -9.54967 -9.23696 -9.11257 -8.84866 -7.91767 -7.17964 -5.72814 -3.07723 -0.04338 1.39062 1.87545 2.29373 2.81003 3.01492 3.39923 3.42847 3.47431 3.59950 3.83668 4.10272 4.44481 4.51184 4.59456 4.62765 4.76296 4.89201 4.91706 4.98955 5.01231 5.09834 5.20678 5.27118 5.35042 5.38670 5.43287 5.53747 5.58341 5.61561 5.65119 5.67658 5.72149 5.77696 5.91346 5.93736 6.02096 6.11293 6.12569 6.21841 6.22198 6.24027 6.40339 6.42626 6.46787 6.65958 6.83236 6.86918 7.24931 7.42763 8.04677 8.19368 8.46616 9.26286 9.98793 10.19357 11.45833 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002085 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.133027 B =13427.055146 C =14503.737754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.137 4.137 3 C -0.013 4.013 4 C -0.216 4.216 5 C 0.089 3.911 6 N -0.430 5.430 7 H 0.445 0.555 8 N -0.270 5.270 9 C 0.135 3.865 10 C -0.117 4.117 11 C 0.560 3.440 12 O -0.523 6.523 13 N -0.722 5.722 14 C 0.143 3.857 15 H 0.090 0.910 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.156 3.844 21 N -0.758 5.758 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.001 3.999 25 N -0.936 5.936 26 Si 0.887 3.113 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C -0.022 4.022 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.190 0.810 36 H 0.397 0.603 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 23.166 -24.656 34.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.033 4.033 4 C -0.226 4.226 5 C -0.068 4.068 6 N -0.130 5.130 7 H 0.289 0.711 8 N -0.095 5.095 9 C -0.023 4.023 10 C -0.123 4.123 11 C 0.347 3.653 12 O -0.400 6.400 13 N -0.375 5.375 14 C 0.039 3.961 15 H 0.108 0.892 16 C -0.221 4.221 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.167 4.167 20 C 0.029 3.971 21 N -0.404 5.404 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.195 4.195 25 N -0.584 5.584 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 C -0.045 4.045 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.207 0.793 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.478 22.713 -24.416 34.667 hybrid contribution -1.370 -0.349 -0.556 1.519 sum 8.108 22.363 -24.972 34.488 Atomic orbital electron populations 1.20804 0.90497 1.03227 1.02316 1.19083 0.96550 0.92244 1.05963 1.20149 0.90822 0.97786 0.94582 1.19553 0.94799 0.91666 1.16627 1.22766 0.85186 0.99080 0.99761 1.46572 1.08148 1.06275 1.52018 0.71073 1.77858 1.16808 0.87424 1.27419 1.21476 0.90090 0.92968 0.97797 1.19842 0.91968 0.89692 1.10796 1.17899 0.87191 0.83483 0.76702 1.90837 1.13089 1.87338 1.48720 1.45994 1.10053 1.05482 1.75933 1.21018 0.96584 0.81835 0.96695 0.89230 1.22178 1.01719 1.01811 0.96407 1.21940 0.99639 0.98373 0.96508 1.21519 1.00286 0.99239 0.94270 1.21778 0.99189 0.98635 0.97098 1.20636 0.93632 0.92333 0.90520 1.42744 1.58835 1.28842 1.09956 1.19095 1.23947 1.09012 0.85168 0.89284 1.24694 1.00105 0.98789 0.95883 1.69710 1.40443 1.36674 1.11595 0.86507 0.78394 0.83387 0.80013 1.21106 1.21755 1.20360 1.21181 0.92173 0.98196 0.92939 0.91350 0.91217 0.91498 0.85491 0.79278 0.76727 0.92208 0.91588 0.92546 0.91390 0.90232 0.91752 0.91893 0.92188 0.92128 0.95684 0.95762 0.80750 0.93118 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.93 36.01 0.36 -0.24 16 2 C -0.14 -1.04 5.82 -105.23 -0.61 -1.65 16 3 C -0.01 -0.09 9.58 -39.46 -0.38 -0.47 16 4 C -0.22 -1.93 6.34 -105.21 -0.67 -2.60 16 5 C 0.09 0.51 12.08 -16.58 -0.20 0.31 16 6 N -0.43 -3.17 7.18 30.86 0.22 -2.95 16 7 H 0.44 1.55 8.96 -182.69 -1.64 -0.09 16 8 N -0.27 -3.51 12.24 34.35 0.42 -3.09 16 9 C 0.14 1.70 7.27 -80.99 -0.59 1.11 16 10 C -0.12 -1.38 6.05 -102.74 -0.62 -2.00 16 11 C 0.56 7.44 7.73 -12.64 -0.10 7.34 16 12 O -0.52 -8.98 15.99 5.24 0.08 -8.90 16 13 N -0.72 -7.40 4.48 -54.96 -0.25 -7.65 16 14 C 0.14 1.48 2.57 -67.93 -0.17 1.30 16 15 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 16 C -0.16 -1.53 9.48 37.16 0.35 -1.17 16 17 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 18 C -0.12 -1.39 5.10 -26.73 -0.14 -1.53 16 19 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 20 C 0.16 3.11 6.26 -4.04 -0.03 3.09 16 21 N -0.76 -18.73 5.41 -59.90 -0.32 -19.05 16 22 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 23 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 24 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 25 N -0.94 -30.02 13.97 55.49 0.78 -29.24 16 26 Si 0.89 22.51 27.73 -169.99 -4.71 17.80 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 30 C -0.02 -0.19 9.08 -39.20 -0.36 -0.55 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.06 -51.93 -0.42 -0.05 16 33 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16 34 H 0.13 0.54 8.04 -52.48 -0.42 0.12 16 35 H 0.19 0.14 8.06 -52.49 -0.42 -0.28 16 36 H 0.40 3.10 6.65 -40.82 -0.27 2.82 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.36 8.58 5.53 -40.82 -0.23 8.36 16 49 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 50 H 0.13 0.82 6.37 -52.49 -0.33 0.48 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -39.81 412.06 -10.43 -50.25 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -9.19 Total: 4.45 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.67 Total: -7.83 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.85 Total: -61.98 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -39.81 -10.43 -50.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175703488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.852 kcal (2) G-P(sol) polarization free energy of solvation -39.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds